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Linhardt D, Woletz M, Paz‐Alonso PM, Windischberger C, Lerma‐Usabiaga G. Biases in Volumetric Versus Surface Analyses in Population Receptive Field Mapping. Hum Brain Mapp 2025; 46:e70140. [PMID: 39854138 PMCID: PMC11758450 DOI: 10.1002/hbm.70140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Revised: 12/19/2024] [Accepted: 01/06/2025] [Indexed: 01/26/2025] Open
Abstract
Population receptive field (pRF) mapping is a quantitative functional MRI (fMRI) analysis method that links visual field positions with specific locations in the visual cortex. A common preprocessing step in pRF analyses involves projecting volumetric fMRI data onto the cortical surface, typically leading to upsampling of the data. This process may introduce biases in the resulting pRF parameters. Using publicly available analysis containers, we compared pRF maps generated from the original volumetric with those from upsampled surface data. Our results show substantial increases in pRF coverage in the central visual field of upsampled datasets. These effects were consistent across early visual cortex areas V1-3. Further analysis indicates that this bias is primarily driven by the nonlinear relationship between cortical distance and visual field eccentricity, known as cortical magnification. Our results underscore the importance of understanding and addressing biases introduced by processing steps to ensure accurate interpretation of pRF mapping data, particularly in cross-study comparisons.
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Affiliation(s)
- David Linhardt
- High Field MR Center, Center for Medical Physics and Biomedical EngineeringMedical University of ViennaViennaAustria
| | - Michael Woletz
- High Field MR Center, Center for Medical Physics and Biomedical EngineeringMedical University of ViennaViennaAustria
| | - Pedro M. Paz‐Alonso
- BCBL ‐ Basque Center on Cognition Brain and LanguageDonostia ‐ San SebastiánSpain
- IKERBASQUE Basque Foundation for ScienceBilbaoSpain
| | - Christian Windischberger
- High Field MR Center, Center for Medical Physics and Biomedical EngineeringMedical University of ViennaViennaAustria
| | - Garikoitz Lerma‐Usabiaga
- BCBL ‐ Basque Center on Cognition Brain and LanguageDonostia ‐ San SebastiánSpain
- IKERBASQUE Basque Foundation for ScienceBilbaoSpain
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2
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Djouoma N, Müller F, Stolle FH, Hoffmann F, Thieme H, Hoffmann MB, Al-Nosairy KO. Rapid Campimetry in glaucoma - correspondence with standard perimetry and OCT. Sci Rep 2024; 14:25400. [PMID: 39455627 PMCID: PMC11511816 DOI: 10.1038/s41598-024-75037-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Accepted: 10/01/2024] [Indexed: 10/28/2024] Open
Abstract
The Rapid Campimetry (RC), a kinetic visual field test proved to reliably detect visual field defects within the central 10° degrees, the most crucial part for visual acuity and quality of life, affected even at very early stages of glaucoma, within a short measurement epoch, ~ 1 min. This study aims to further investigate RC correspondence with standard tests in glaucoma, namely standard automated perimetry (SAP) and optical coherence tomography (OCT) within 10° of visual field (VF). For this purpose, we included 41 participants, [21 glaucoma (GLA, mean age: 65.9 ± 12.4; 12 preperimetric eyes and 11 with VF defects) and 20 healthy controls (HC; mean age: 65.0 ± 10.3); 20 eyes]. At first, we compared the rate of detection/exclusion of VF defects in RC vs. SAP. Then, for those with VF defects (11 eyes), we investigated the 68-pointwise correspondence of 10 - 2 layout of RC and SAP. For functional and structural (SF) correspondence, pointwise correspondence of RC, SAP vs. OCTmacula [ macular ganglion cell thickness (GCL)] was also performed. Further, we compared sector-based correspondence of RC, SAP vs. OCTmacula accounting for GCL displacement at the fovea as well as sector-based correspondence with OCTdisc [peripapillary retinal nerve fiber layer thickness (pRNFL)]. Agreement estimates were reported along with Cohen Kappa ([Formula: see text]) statistic. For overall performance, RC and SAP showed 100% agreement ([Formula: see text]) for the exclusion of VF defects (HC and preperimetric GLA) and for detection of VF defects [11 eyes of 9 GLA, ([Formula: see text]]. Further, RC outperformed SAP in detection of arcuate scotomas, 7 vs. 5, respectively. Pointwise correspondence of VF defects (11 eyes), RC-SAP agreement reached 90% accuracy ([Formula: see text]). For SF correspondence, RC [SAP] showed 62% [69%] pointwise agreement with OCTmacula, ([Formula: see text]). For macular sector-based correspondence, SF correspondence improved and reached 83% [83%] agreement, ([Formula: see text]). For OCTdisc sector-based analysis, SF correspondence was highest, 100% [100%] agreement, ([Formula: see text]). Rapid Campimetry gave reproducible results in comparison to SAP and OCT with high potential as a screening VF method given its short testing duration, ~ 1 min in screening mode, and compatibility with telemedicine technologies upon future optimization and automation.
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Affiliation(s)
- Nidele Djouoma
- Ophthalmic Department, Faculty of Medicine, Otto-von-Guericke University, Leipziger Str. 44, 39120, Magdeburg, Germany
| | - Fabian Müller
- H & M Medical Solutions GmbH, 14195, Berlin, Germany
| | - Francie H Stolle
- Ophthalmic Department, Faculty of Medicine, Otto-von-Guericke University, Leipziger Str. 44, 39120, Magdeburg, Germany
| | - Friedrich Hoffmann
- Ophthalmology Department, Charité-Universitätsmedizin Berlin, 12203, Berlin, Germany
| | - Hagen Thieme
- Ophthalmic Department, Faculty of Medicine, Otto-von-Guericke University, Leipziger Str. 44, 39120, Magdeburg, Germany
| | - Michael B Hoffmann
- Ophthalmic Department, Faculty of Medicine, Otto-von-Guericke University, Leipziger Str. 44, 39120, Magdeburg, Germany.
- Center for Behavioral Brain Sciences, Magdeburg, Germany.
| | - Khaldoon O Al-Nosairy
- Ophthalmic Department, Faculty of Medicine, Otto-von-Guericke University, Leipziger Str. 44, 39120, Magdeburg, Germany
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Amor Z, Ciuciu P, G R C, Daval-Frérot G, Mauconduit F, Thirion B, Vignaud A. Non-Cartesian 3D-SPARKLING vs Cartesian 3D-EPI encoding schemes for functional Magnetic Resonance Imaging at 7 Tesla. PLoS One 2024; 19:e0299925. [PMID: 38739571 PMCID: PMC11090341 DOI: 10.1371/journal.pone.0299925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 02/16/2024] [Indexed: 05/16/2024] Open
Abstract
The quest for higher spatial and/or temporal resolution in functional MRI (fMRI) while preserving a sufficient temporal signal-to-noise ratio (tSNR) has generated a tremendous amount of methodological contributions in the last decade ranging from Cartesian vs. non-Cartesian readouts, 2D vs. 3D acquisition strategies, parallel imaging and/or compressed sensing (CS) accelerations and simultaneous multi-slice acquisitions to cite a few. In this paper, we investigate the use of a finely tuned version of 3D-SPARKLING. This is a non-Cartesian CS-based acquisition technique for high spatial resolution whole-brain fMRI. We compare it to state-of-the-art Cartesian 3D-EPI during both a retinotopic mapping paradigm and resting-state acquisitions at 1mm3 (isotropic spatial resolution). This study involves six healthy volunteers and both acquisition sequences were run on each individual in a randomly-balanced order across subjects. The performances of both acquisition techniques are compared to each other in regards to tSNR, sensitivity to the BOLD effect and spatial specificity. Our findings reveal that 3D-SPARKLING has a higher tSNR than 3D-EPI, an improved sensitivity to detect the BOLD contrast in the gray matter, and an improved spatial specificity. Compared to 3D-EPI, 3D-SPARKLING yields, on average, 7% more activated voxels in the gray matter relative to the total number of activated voxels.
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Affiliation(s)
- Zaineb Amor
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Philippe Ciuciu
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
- Inria, MIND team, Université Paris-Saclay, Palaiseau, France
| | - Chaithya G R
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
- Inria, MIND team, Université Paris-Saclay, Palaiseau, France
| | - Guillaume Daval-Frérot
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
- Inria, MIND team, Université Paris-Saclay, Palaiseau, France
- Siemens Heathineers, Courbevoie, France
| | - Franck Mauconduit
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Bertrand Thirion
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
- Inria, MIND team, Université Paris-Saclay, Palaiseau, France
| | - Alexandre Vignaud
- CEA, Joliot, NeuroSpin, Université Paris-Saclay, Gif-sur-Yvette, France
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Cheng W, Liu J, Jiang T, Li M. The application of functional imaging in visual field defects: a brief review. Front Neurol 2024; 15:1333021. [PMID: 38410197 PMCID: PMC10895022 DOI: 10.3389/fneur.2024.1333021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Accepted: 01/31/2024] [Indexed: 02/28/2024] Open
Abstract
Visual field defects (VFDs) represent a prevalent complication stemming from neurological and ophthalmic conditions. A range of factors, including tumors, brain surgery, glaucoma, and other disorders, can induce varying degrees of VFDs, significantly impacting patients' quality of life. Over recent decades, functional imaging has emerged as a pivotal field, employing imaging technology to illustrate functional changes within tissues and organs. As functional imaging continues to advance, its integration into various clinical aspects of VFDs has substantially enhanced the diagnostic, therapeutic, and management capabilities of healthcare professionals. Notably, prominent imaging techniques such as DTI, OCT, and MRI have garnered widespread adoption, yet they possess unique applications and considerations. This comprehensive review aims to meticulously examine the application and evolution of functional imaging in the context of VFDs. Our objective is to furnish neurologists and ophthalmologists with a systematic and comprehensive comprehension of this critical subject matter.
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Affiliation(s)
- Wangxinjun Cheng
- Department of Rehabilitation, The First Affiliated Hospital of Nanchang University, Nanchang, China
- Queen Mary College, Nanchang University, Nanchang, China
| | - Jingshuang Liu
- Department of Rehabilitation, The First Affiliated Hospital of Nanchang University, Nanchang, China
- Queen Mary College, Nanchang University, Nanchang, China
| | - Tianqi Jiang
- The First Clinical Medical College, Nanchang University, Nanchang, China
| | - Moyi Li
- Department of Rehabilitation, The First Affiliated Hospital of Nanchang University, Nanchang, China
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Silson EH, Baker CI, Aleman TS, Maguire AM, Bennett J, Ashtari M. Motion-selective areas V5/MT and MST appear resistant to deterioration in choroideremia. Neuroimage Clin 2023; 38:103384. [PMID: 37023490 PMCID: PMC10119684 DOI: 10.1016/j.nicl.2023.103384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 03/07/2023] [Accepted: 03/20/2023] [Indexed: 04/08/2023]
Abstract
Choroideremia (CHM) is an X-linked recessive form of hereditary retinal degeneration, which preserves only small islands of central retinal tissue. Previously, we demonstrated the relationship between central vision and structure and population receptive fields (pRF) using functional magnetic resonance imaging (fMRI) in untreated CHM subjects. Here, we replicate and extend this work, providing a more in-depth analysis of the visual responses in a cohort of CHM subjects who participated in a retinal gene therapy clinical trial. fMRI was conducted in six CHM subjects and six age-matched healthy controls (HC's) while they viewed drifting contrast pattern stimuli monocularly. A single ∼3-minute fMRI run was collected for each eye. Participants also underwent ophthalmic evaluations of visual acuity and static automatic perimetry (SAP). Consistent with our previous report, a single ∼ 3 min fMRI run accurately characterized ophthalmic evaluations of visual function in most CHM subjects. In-depth analyses of the cortical distribution of pRF responses revealed that the motion-selective regions V5/MT and MST appear resistant to progressive retinal degenerations in CHM subjects. This effect was restricted to V5/MT and MST and was not present in either primary visual cortex (V1), motion-selective V3A or regions within the ventral visual pathway. Motion-selective areas V5/MT and MST appear to be resistant to the continuous detrimental impact of CHM. Such resilience appears selective to these areas and may be mediated by independent retina-V5/MT anatomical connections that bypass V1. We did not observe any significant impact of gene therapy.
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Affiliation(s)
- Edward H Silson
- Section on Learning and Plasticity, Laboratory of Brain and Cognition, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, United States
| | - Chris I Baker
- Section on Learning and Plasticity, Laboratory of Brain and Cognition, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, United States
| | - Tomas S Aleman
- Center for Advanced Retinal and Ocular Therapeutics (CAROT), University of Pennsylvania, Philadelphia, PA, United States; F.M. Kirby Center for Molecular Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, United States
| | - Albert M Maguire
- Center for Advanced Retinal and Ocular Therapeutics (CAROT), University of Pennsylvania, Philadelphia, PA, United States; F.M. Kirby Center for Molecular Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, United States
| | - Jean Bennett
- Center for Advanced Retinal and Ocular Therapeutics (CAROT), University of Pennsylvania, Philadelphia, PA, United States; F.M. Kirby Center for Molecular Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, United States
| | - Manzar Ashtari
- Center for Advanced Retinal and Ocular Therapeutics (CAROT), University of Pennsylvania, Philadelphia, PA, United States; F.M. Kirby Center for Molecular Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, United States; Department of Radiology, University of Pennsylvania, Philadelphia, PA, United States.
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Linhardt D, Pawloff M, Woletz M, Hummer A, Tik M, Vasileiadi M, Ritter M, Lerma-Usabiaga G, Schmidt-Erfurth U, Windischberger C. Intrasession and Intersession Reproducibility of Artificial Scotoma pRF Mapping Results at Ultra-High Fields. eNeuro 2022; 9:ENEURO.0087-22.2022. [PMID: 36635900 PMCID: PMC9512620 DOI: 10.1523/eneuro.0087-22.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 06/29/2022] [Accepted: 08/23/2022] [Indexed: 02/02/2023] Open
Abstract
Functional magnetic resonance imaging (fMRI) combined with population receptive field (pRF) mapping allows for associating positions on the visual cortex to areas on the visual field. Apart from applications in healthy subjects, this method can also be used to examine dysfunctions in patients suffering from partial visual field losses. While such objective measurement of visual deficits (scotoma) is of great importance for, e.g., longitudinal studies addressing treatment effects, it requires a thorough assessment of accuracy and reproducibility of the results obtained. In this study, we quantified the reproducibility of pRF mapping results within and across sessions in case of central visual field loss in a group of 15 human subjects. We simulated scotoma by masking a central area of 2° radius from stimulation to establish ground-truth conditions. This study was performed on a 7T ultra-high field MRI scanner for increased sensitivity. We found excellent intrasession and intersession reproducibility for the pRF center position (Spearman correlation coefficients for x, y: >0.95; eccentricity: >0.87; polar angle: >0.98), but only modest reproducibility for pRF size (Spearman correlation coefficients around 0.4). We further examined the scotoma detection performance using an automated method based on a reference dataset acquired with full-field stimulation. For the 2° artificial scotoma, the group-averaged scotoma sizes were estimated at between 1.92° and 2.19° for different sessions. We conclude that pRF mapping of visual field losses yields robust, reproducible measures of retinal function and suggest the use of pRF mapping as an objective method for monitoring visual deficits during therapeutic interventions or disease progression.
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Affiliation(s)
- David Linhardt
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, 1090 Vienna, Austria
| | - Maximilian Pawloff
- Department of Ophthalmology, Medical University of Vienna, 1090 Vienna, Austria
| | - Michael Woletz
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, 1090 Vienna, Austria
| | - Allan Hummer
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, 1090 Vienna, Austria
| | - Martin Tik
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, 1090 Vienna, Austria
| | - Maria Vasileiadi
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, 1090 Vienna, Austria
| | - Markus Ritter
- Department of Ophthalmology, Medical University of Vienna, 1090 Vienna, Austria
| | - Garikoitz Lerma-Usabiaga
- BCBL, Basque Center on Cognition, Brain and Language, 20009 Donostia-San Sebastián, Gipuzkoa, Spain
| | | | - Christian Windischberger
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, 1090 Vienna, Austria
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Urale PWB, Puckett AM, York A, Arnold D, Schwarzkopf DS. Highly accurate retinotopic maps of the physiological blind spot in human visual cortex. Hum Brain Mapp 2022; 43:5111-5125. [PMID: 35796159 PMCID: PMC9812231 DOI: 10.1002/hbm.25996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 05/18/2022] [Accepted: 06/15/2022] [Indexed: 01/15/2023] Open
Abstract
The physiological blind spot is a naturally occurring scotoma corresponding with the optic disc in the retina of each eye. Even during monocular viewing, observers are usually oblivious to the scotoma, in part because the visual system extrapolates information from the surrounding area. Unfortunately, studying this visual field region with neuroimaging has proven difficult, as it occupies only a small part of retinotopic cortex. Here, we used functional magnetic resonance imaging and a novel data-driven method for mapping the retinotopic organization in and around the blind spot representation in V1. Our approach allowed for highly accurate reconstructions of the extent of an observer's blind spot, and out-performed conventional model-based analyses. This method opens exciting opportunities to study the plasticity of receptive fields after visual field loss, and our data add to evidence suggesting that the neural circuitry responsible for impressions of perceptual completion across the physiological blind spot most likely involves regions of extrastriate cortex-beyond V1.
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Affiliation(s)
- Poutasi W. B. Urale
- School of Optometry & Vision ScienceUniversity of AucklandAucklandNew Zealand
| | - Alexander M. Puckett
- School of PsychologyUniversity of QueenslandBrisbaneQueenslandAustralia
- Queensland Brain InstituteUniversity of QueenslandBrisbaneQueenslandAustralia
| | - Ashley York
- School of PsychologyUniversity of QueenslandBrisbaneQueenslandAustralia
- Queensland Brain InstituteUniversity of QueenslandBrisbaneQueenslandAustralia
| | - Derek Arnold
- School of PsychologyUniversity of QueenslandBrisbaneQueenslandAustralia
- Queensland Brain InstituteUniversity of QueenslandBrisbaneQueenslandAustralia
| | - D. Samuel Schwarzkopf
- School of Optometry & Vision ScienceUniversity of AucklandAucklandNew Zealand
- Experimental PsychologyUniversity College LondonLondonUnited Kingdom
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Kim DY, Jang Y, Heo DW, Jo S, Kim HC, Lee JH. Electronic Cigarette Vaping Did Not Enhance the Neural Process of Working Memory for Regular Cigarette Smokers. Front Hum Neurosci 2022; 16:817538. [PMID: 35250518 PMCID: PMC8894252 DOI: 10.3389/fnhum.2022.817538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 01/20/2022] [Indexed: 12/01/2022] Open
Abstract
Background Electronic cigarettes (e-cigs) as substitute devices for regular tobacco cigarettes (r-cigs) have been increasing in recent times. We investigated neuronal substrates of vaping e-cigs and smoking r-cigs from r-cig smokers. Methods Twenty-two r-cig smokers made two visits following overnight smoking cessation. Functional magnetic resonance imaging (fMRI) data were acquired while participants watched smoking images. Participants were then allowed to smoke either an e-cig or r-cig until satiated and fMRI data were acquired. Their craving levels and performance on the Montreal Imaging Stress Task and a 3-back alphabet/digit recognition task were obtained and analyzed using two-way repeated-measures analysis of variance. Regions-of-interest (ROIs) were identified by comparing the abstained and satiated conditions. Neuronal activation within ROIs was regressed on the craving and behavioral data separately. Results Craving was more substantially reduced by smoking r-cigs than by vaping e-cigs. The response time (RT) for the 3-back task was significantly shorter following smoking r-cigs than following vaping e-cigs (interaction: F (1, 17) = 5.3, p = 0.035). Neuronal activations of the right vermis (r = 0.43, p = 0.037, CI = [-0.05, 0.74]), right caudate (r = 0.51, p = 0.015, CI = [0.05, 0.79]), and right superior frontal gyrus (r = −0.70, p = 0.001, CI = [−0.88, −0.34]) were significantly correlated with the RT for the 3-back task only for smoking r-cigs. Conclusion Our findings suggest that insufficient satiety from vaping e-cigs for r-cigs smokers may be insignificant effect on working memory function.
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Affiliation(s)
- Dong-Youl Kim
- Department of Brain and Cognitive Engineering, Korea University, Seoul, South Korea
- Fralin Biomedical Research Institute at VTC, Virginia Tech, Roanoke, VA, United States
| | - Yujin Jang
- Department of Psychology, Korea University, Seoul, South Korea
| | - Da-Woon Heo
- Department of Brain and Cognitive Engineering, Korea University, Seoul, South Korea
| | - Sungman Jo
- Department of Brain and Cognitive Engineering, Korea University, Seoul, South Korea
| | - Hyun-Chul Kim
- Department of Brain and Cognitive Engineering, Korea University, Seoul, South Korea
- Department of Artificial Intelligence, Kyungpook National University, Daegu, South Korea
| | - Jong-Hwan Lee
- Department of Brain and Cognitive Engineering, Korea University, Seoul, South Korea
- *Correspondence: Jong-Hwan Lee,
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