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Piffer S, Ubaldi L, Tangaro S, Retico A, Talamonti C. Tackling the small data problem in medical image classification with artificial intelligence: a systematic review. PROGRESS IN BIOMEDICAL ENGINEERING (BRISTOL, ENGLAND) 2024; 6:032001. [PMID: 39655846 DOI: 10.1088/2516-1091/ad525b] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 05/30/2024] [Indexed: 12/18/2024]
Abstract
Though medical imaging has seen a growing interest in AI research, training models require a large amount of data. In this domain, there are limited sets of data available as collecting new data is either not feasible or requires burdensome resources. Researchers are facing with the problem of small datasets and have to apply tricks to fight overfitting. 147 peer-reviewed articles were retrieved from PubMed, published in English, up until 31 July 2022 and articles were assessed by two independent reviewers. We followed the Preferred Reporting Items for Systematic reviews and Meta-Analyse (PRISMA) guidelines for the paper selection and 77 studies were regarded as eligible for the scope of this review. Adherence to reporting standards was assessed by using TRIPOD statement (transparent reporting of a multivariable prediction model for individual prognosis or diagnosis). To solve the small data issue transfer learning technique, basic data augmentation and generative adversarial network were applied in 75%, 69% and 14% of cases, respectively. More than 60% of the authors performed a binary classification given the data scarcity and the difficulty of the tasks. Concerning generalizability, only four studies explicitly stated an external validation of the developed model was carried out. Full access to all datasets and code was severely limited (unavailable in more than 80% of studies). Adherence to reporting standards was suboptimal (<50% adherence for 13 of 37 TRIPOD items). The goal of this review is to provide a comprehensive survey of recent advancements in dealing with small medical images samples size. Transparency and improve quality in publications as well as follow existing reporting standards are also supported.
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Affiliation(s)
- Stefano Piffer
- Department of Experimental and Clinical Biomedical Sciences, University of Florence, Florence, Italy
- National Institute for Nuclear Physics (INFN), Florence Division, Florence, Italy
| | - Leonardo Ubaldi
- Department of Experimental and Clinical Biomedical Sciences, University of Florence, Florence, Italy
- National Institute for Nuclear Physics (INFN), Florence Division, Florence, Italy
| | - Sabina Tangaro
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
- INFN, Bari Division, Bari, Italy
| | | | - Cinzia Talamonti
- Department of Experimental and Clinical Biomedical Sciences, University of Florence, Florence, Italy
- National Institute for Nuclear Physics (INFN), Florence Division, Florence, Italy
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Yadav S, Parihar A, Sadique MA, Ranjan P, Kumar N, Singhal A, Khan R. Emerging Point-of-Care Optical Biosensing Technologies for Diagnostics of Microbial Infections. ACS APPLIED OPTICAL MATERIALS 2023; 1:1245-1262. [DOI: 10.1021/acsaom.3c00129] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2025]
Affiliation(s)
- Shalu Yadav
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Arpana Parihar
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
| | - Mohd Abubakar Sadique
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Pushpesh Ranjan
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Neeraj Kumar
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Ayushi Singhal
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Raju Khan
- Industrial Waste Utilization, Nano and Biomaterials, CSIR─Advanced Materials and Processes Research Institute (AMPRI), Hoshangabad Road, Bhopal 462026, Madhya Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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Islam M, Dukyil AS, Alyahya S, Habib S. An IoT Enable Anomaly Detection System for Smart City Surveillance. SENSORS (BASEL, SWITZERLAND) 2023; 23:2358. [PMID: 36850955 PMCID: PMC9966604 DOI: 10.3390/s23042358] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/07/2023] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
Abstract
Since the advent of visual sensors, smart cities have generated massive surveillance video data, which can be intelligently inspected to detect anomalies. Computer vision-based automated anomaly detection techniques replace human intervention to secure video surveillance applications in place from traditional video surveillance systems that rely on human involvement for anomaly detection, which is tedious and inaccurate. Due to the diverse nature of anomalous events and their complexity, it is however, very challenging to detect them automatically in a real-world scenario. By using Artificial Intelligence of Things (AIoT), this research work presents an efficient and robust framework for detecting anomalies in surveillance large video data. A hybrid model integrating 2D-CNN and ESN are proposed in this research study for smart surveillance, which is an important application of AIoT. The CNN is used as feature extractor from input videos which are then inputted to autoencoder for feature refinement followed by ESN for sequence learning and anomalous events detection. The proposed model is lightweight and implemented over edge devices to ensure their capability and applicability over AIoT environments in a smart city. The proposed model significantly enhanced performance using challenging surveillance datasets compared to other methods.
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Affiliation(s)
- Muhammad Islam
- Department of Electrical Engineering, College of Engineering and Information Technology, Onaizah Colleges, Onaizah 2053, Saudi Arabia
| | | | - Saleh Alyahya
- Department of Electrical Engineering, College of Engineering and Information Technology, Onaizah Colleges, Onaizah 2053, Saudi Arabia
| | - Shabana Habib
- Department of Information Technology, College of Computer, Qassim University, Buraydah 51452, Saudi Arabia
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An Effective Skin Cancer Classification Mechanism via Medical Vision Transformer. SENSORS 2022; 22:s22114008. [PMID: 35684627 PMCID: PMC9182815 DOI: 10.3390/s22114008] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 05/12/2022] [Accepted: 05/20/2022] [Indexed: 11/17/2022]
Abstract
Skin Cancer (SC) is considered the deadliest disease in the world, killing thousands of people every year. Early SC detection can increase the survival rate for patients up to 70%, hence it is highly recommended that regular head-to-toe skin examinations are conducted to determine whether there are any signs or symptoms of SC. The use of Machine Learning (ML)-based methods is having a significant impact on the classification and detection of SC diseases. However, there are certain challenges associated with the accurate classification of these diseases such as a lower detection accuracy, poor generalization of the models, and an insufficient amount of labeled data for training. To address these challenges, in this work we developed a two-tier framework for the accurate classification of SC. During the first stage of the framework, we applied different methods for data augmentation to increase the number of image samples for effective training. As part of the second tier of the framework, taking into consideration the promising performance of the Medical Vision Transformer (MVT) in the analysis of medical images, we developed an MVT-based classification model for SC. This MVT splits the input image into image patches and then feeds these patches to the transformer in a sequence structure, like word embedding. Finally, Multi-Layer Perceptron (MLP) is used to classify the input image into the corresponding class. Based on the experimental results achieved on the Human Against Machine (HAM10000) datasets, we concluded that the proposed MVT-based model achieves better results than current state-of-the-art techniques for SC classification.
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