Sweet Pepper (Capsicum annuum L.) Canopy Photosynthesis Modeling Using 3D Plant Architecture and Light Ray-Tracing

Disentangling the Heterosis in Biomass Production and Radiation Use Efficiency in Maize: A Phytomer-Based 3D Modelling Approach

Maize (Zea mays L.) benefits from heterosis in-yield formation and photosynthetic efficiency through optimizing canopy structure and improving leaf photosynthesis. However, the role of canopy structure and photosynthetic capacity in determining heterosis in biomass production and radiation use efficiency has not been separately clarified. We developed a quantitative framework based on a phytomer-based three-dimensional canopy photosynthesis model and simulated light capture and canopy photosynthetic production in scenarios with and without heterosis in either canopy structure or leaf photosynthetic capacity. The accumulated above-ground biomass of Jingnongke728 was 39% and 31% higher than its male parent, Jing2416, and female parent, JingMC01, while accumulated photosynthetically active radiation was 23% and 14% higher, correspondingly, leading to an increase of 13% and 17% in radiation use efficiency. The increasing post-silking radiation use efficiency was mainly attributed to leaf photosynthetic improvement, while the dominant contributing factor differs for male and female parents for heterosis in post-silking yield formation. This quantitative framework illustrates the potential to identify the key traits related to yield and radiation use efficiency and helps breeders to make selections for higher yield and photosynthetic efficiency.

Development of a transpiration model for precise tomato (Solanum lycopersicum L.) irrigation control under various environmental conditions in greenhouse

Transpiration can directly reflect the response of the crop growth and development, therefore irrigation design based on a transpiration model is an important factor towards establishing an efficient irrigation strategy. Thus, the purpose of this experiment is to develop and verify a tomato transpiration model by correcting the relationship between the transpiration rate and environmental factors by measuring the actual transpiration rate. The actual crop transpiration rate, which is measured using a load cell, and the weight changes calculated at 10-min intervals, are applied to the development of the transpiration model. The experimental results show that the transpiration rate has no linear relationship with the radiation amount (Rad) or vapor pressure deficit (VPD). The relationship between Rad and VPD with transpiration rate was fitted by the exponential rise to maximum, and gaussian peak curve, respectively. This allowed a transpiration model to be developed by compensating the Rad and VPD based on the existing Penman-Monteith (P-M) equation. The developed transpiration model showed higher regression constant values than the existing one. The developed transpiration model from the experiment can be utilized for precise irrigation control.

Quantitative Analysis of UV-B Radiation Interception in 3D Plant Structures and Intraindividual Distribution of Phenolic Contents

Ultraviolet-B (UV-B) acts as a regulatory stimulus, inducing the dose-dependent biosynthesis of phenolic compounds such as flavonoids at the leaf level. However, the heterogeneity of biosynthesis activation generated within a whole plant is not fully understood until now and cannot be interpreted without quantification of UV-B radiation interception. In this study, we analyzed the spatial UV-B radiation interception of kales (Brassica oleracea L. var. Acephala) grown under supplemental UV-B LED using ray-tracing simulation with 3-dimension-scanned models and leaf optical properties. The UV-B-induced phenolic compounds and flavonoids accumulated more, with higher UV-B interception and younger leaves. To distinguish the effects of UV-B energy and leaf developmental age, the contents were regressed separately and simultaneously. The effect of intercepted UV-B on flavonoid content was 4.9-fold that of leaf age, but the effects on phenolic compound biosynthesis were similar. This study confirmed the feasibility and relevance of UV-B radiation interception analysis and paves the way to explore the physical and physiological base determining the intraindividual distribution of phenolic compound in controlled environments.

Interpretation and Evaluation of Electrical Lighting in Plant Factories with Ray-Tracing Simulation and 3D Plant Modeling

In plant factories, light is fully controllable for crop production but involves a cost. For efficient lighting, light use efficiency (LUE) should be considered as part of light environment design. The objectives of this study were to evaluate and interpret the light interception, photosynthetic rate, and LUE of lettuces under electrical lights using ray-tracing simulation. The crop architecture model was constructed by 3D scanning, and ray-tracing simulation was used to interpret light interception and photosynthesis. For evaluation of simulation reliability, measured light intensities and photosynthetic rates in a growth chamber were compared with those obtained by simulation at different planting densities. Under several scenarios modeling various factors affecting light environments, changes in light interception and LUE were interpreted. The light intensities and photosynthetic rates obtained by simulation showed good agreement with the measured values, with R2 > 0.86. With decreasing planting density, the light interception of the central plant increased by approximately 18.7%, but that of neighboring plants decreased by approximately 5.5%. Under the various scenarios, shorter lighting distances induced more heterogenetic light distribution on plants and caused lower light interception. Under a homogenous light distribution, the light intensity was optimal at approximately 360 μmol m−2 s−1 with an LUE of 6.5 g MJ−1. The results of this study can provide conceptual insights into the design of light environments in plant factories.

Vertical profile of photosynthetic light response within rice canopy

Measured leaf photosynthetic light response (PLR) curves at different positions were fitted by non-rectangular hyperbola (NRH) equation to characterize vertical profile of parameters in NRH equation, namely maximum net photosynthetic rate P_nmax, initial quantum yield of assimilation φ, dark respiration rate R_d, and convexity of the curve k, at both jointing and heading stages within rice canopy. And leaf-position-specific and canopy average NRH equations were constructed respectively based on measured PLR curves at each specific leaf position and all measured PLR curves within rice canopy. The results showed that the P_nmax, φ, and R_d reached the maximum at the top second leaf and then decreased at jointing stage and decreased in downward leaves at heading stage. The k increased with lowering leaf position at both stages. The leaf-position-specific NRH equation performed well in estimating net photosynthetic rate P_n for all leaves at different positions and stages, while the canopy average NRH equation underestimated leaf P_n at upper canopy and overestimated P_n at lower canopy. The top fourth leaf was suitable for estimating photosynthetic parameters at canopy scale, as the P_nmax, φ, R_d, and k of the top fourth leaf were near to these parameters of rice canopy, and the canopy average NRH equation performed well in estimating leaf P_n for the top fourth leaf. The results will provide basic information for upscaling leaf photosynthesis to canopy scale.

Decomposition analysis on soybean productivity increase under elevated CO2 using 3-D canopy model reveals synergestic effects of CO2 and light in photosynthesis

BACKGROUND AND AIMS

Understanding how climate change influences crop productivity helps in identifying new options to increase crop productivity. Soybean is the most important dicotyledonous seed crop in terms of planting area. Although the impacts of elevated atmospheric [CO2] on soybean physiology, growth and biomass accumulation have been studied extensively, the contribution of different factors to changes in season-long whole crop photosynthetic CO2 uptake [gross primary productivity (GPP)] under elevated [CO2] have not been fully quantified.

METHODS

A 3-D canopy model combining canopy 3-D architecture, ray tracing and leaf photosynthesis was built to: (1) study the impacts of elevated [CO2] on soybean GPP across a whole growing season; (2) dissect the contribution of different factors to changes in GPP; and (3) determine the extent, if any, of synergism between [CO2] and light on changes in GPP. The model was parameterized from measurements of leaf physiology and canopy architectural parameters at the soybean Free Air CO2 Enrichment (SoyFACE) facility in Champaign, Illinois.

KEY RESULTS

Using this model, we showed that both a CO2 fertilization effect and changes in canopy architecture contributed to the large increase in GPP while acclimation in photosynthetic physiological parameters to elevated [CO2] and altered leaf temperature played only a minor role in the changes in GPP. Furthermore, at early developmental stages, elevated [CO2] increased leaf area index which led to increased canopy light absorption and canopy photosynthesis. At later developmental stages, on days with high ambient light levels, the proportion of leaves in a canopy limited by Rubisco carboxylation increased from 12.2 % to 35.6 %, which led to a greater enhancement of elevated [CO2] to GPP.

CONCLUSIONS

This study develops a new method to dissect the contribution of different factors to responses of crops under climate change. We showed that there is a synergestic effect of CO2 and light on crop growth under elevated CO2 conditions.

Effects of Canopy Microclimate on Chinese Chestnut (Castanea mollissima Blume) Nut Yield and Quality

There are considerable differences in chestnut yield and quality across different chestnut-producing regions in China, indicating that environmental factors affect these properties of chestnuts. Furthermore, nut yield and quality differ depending on canopy position. Therefore, this study investigated the relationship between the canopy microclimate, nut yield, and quality. We determined microclimate factors from blossoming to ripening at different positions in the canopy. Nut yield and quality and the number of different branch types were measured at various canopy positions. The light intensity and temperature of the different canopy layers exhibited funnel-form distributions ranging from 0 to 3600 μmol·m2·s−1 and from 32 to 37 °C, respectively. Canopy humidity showed an inverted funnel-shaped distribution ranging from 26% to 40%. Nut yield and quality in the top and outer canopies were higher than in the bottom and inner canopies. Branches in the top-middle and peripheral parts of the canopy also produced higher yields, especially strong branches that bore more nuts. Nut yield and quality had positive correlations with light intensity (r = 0.735) and temperature (r = 0.709), whereas they were inversely associated with humidity (r = −0.584). The nut yield was more than 200 gm−3 when the light intensity was above 1500 μmol·m2·s−1, the temperature was above 34.4 °C, and the humidity was below 27.5%.

Effects of Tree Shape on the Microclimate and Fruit Quality Parameters of Camellia oleifera Abel

Tree shape can affect microclimate, which may directly influence fruit growth and development. Open center and round head are two tree canopy shapes that are generally used in Camellia oleifera Abel. cultivation. To study the effects of the two canopy shapes on the microclimate and fruit quality parameters inside the canopy and investigate the correlations between microclimate and oil yield characteristics, microclimates in different developmental periods and fruit quality parameters at maturity at different positions in the two canopy shapes were determined. In this study, the open-center shape increased the light intensity and temperature, and reduced the relative humidity within the canopy, and the microclimate was more uniformly distributed within the open-center canopy. Fruit quality parameters of open-center canopied trees were also significantly increased and had more uniform distributions, especially the oil yield parameters. The content ratio of the dry seed, oil content ratio of the fresh fruit, and oil yield increased by 43.55%, 59.30% and 79.01%, in the lower layer, respectively, and 27.33%, 41.75%, and 55.43%, in the inner canopy, respectively, compared to those of round-head canopied trees. For both canopy shapes, oil yield parameters had positive correlations with light intensity and temperature, but negative correlations with relative humidity, and the correlation coefficients between light intensity and temperature at different developmental stages and oil yield parameters in round-head canopies were greater than in the open-center canopies. Additionally, regression equations between the single microclimatic factor in different developmental periods and oil yield parameters could be used to estimate the latter in the two canopy shapes. The optimum light conditions for open-center and round-head canopy shapes were 916–1893 and 1108–1259 μmol·m2·s−1, respectively. Overall, the open-center canopy had a more desirable microclimate and a more uniform microclimate distribution, especially the light intensity, which contributes to high uniform fruit quality parameters. Thus, an open-center canopy is the desirable shape in C. oleifera production.

Optimal Design of Plant Canopy Based on Light Interception: A Case Study With Loquat

Canopy architecture determines the light distribution and light interception in the canopy. Reasonable shaping and pruning can optimize tree structure; maximize the utilization of land, space and light energy; and lay the foundation for achieving early fruiting, high yield, health and longevity. Due to the complexity of loquat canopy architecture and the multi-year period of tree growth, the variables needed for experiments in canopy type training are hardly accessible through field measurements. In this paper, we concentrated on exploring the relationship between branching angle and light interception using a three-dimensional (3D) canopy model in loquat (Eriobotrya japonica Lindl). First, detailed 3D models of loquat trees were built by integrating branch and organ models. Second, the morphological models of different loquat trees were constructed by interactive editing. Third, the 3D individual-tree modeling software LSTree integrated with the OpenGL shadow technique, a radiosity model and a modified rectangular hyperbola model was used to calculate the silhouette to total area ratio, the distribution of photosynthetically active radiation within canopies and the net photosynthetic rate, respectively. Finally, the influence of loquat tree organ organization on the light interception of the trees was analyzed with different parameters. If the single branch angle between the level 2 scaffold branch and trunk is approximately 15° and the angles among the level 2 scaffold branches range from 60 to 90°, then a better light distribution can be obtained. The results showed that the branching angle has a significant impact on light interception, which is useful for grower manipulation of trees, e.g., shoot bending (scaffold branch angle). Based on this conclusion, a reasonable tree structure was selected for intercepting light. This quantitative simulation and analytical method provides a new digital and visual method that can aid in the design of tree architecture.

Breeding new varieties for controlled environments

Agricultural production in controlled environments is increasingly feasible, and may play an important role in providing nutrition and choice to growing urban centres. New technologies in lighting, ventilation, robotics and irrigation are just a few of the innovations that enable production of high-value specialty crops outside of a traditional field setting. However, despite all of the advances in the hardware within the plant factory operation, innovation of the most complex machine has been neglected - the plant itself. Indoor agricultural operations typically rely on legacy varieties, plants selected and bred for field conditions. In the field, phenotypic stability is paramount, as production must be consistent in an unpredictable and changing environment. However, the controlled environment affords focus on different breeding priorities as environmental flux, pests, pathogens and post-harvest quality are less formidable barriers to production. On the contrary, breeding for controlled environments shifts the focus to a completely different set of plant traits, such as rapid growth, performance in low light environments and active manipulation of plant stature. Instead of breeding for phenotypic stability, plants may be bred to maximise genetic plasticity, allowing specific traits to be presented as a function of the quality of the ambient light spectrum. In this scenario plant varieties may be grown with optimal size, supporting a focus on consumer traits like flavour or accumulation of health-related compounds. Gene editing may be a central technology in the production of designer plants for controlled environments. This review considers the opportunity for breeding for controlled environments, with a focus on a revision of priorities for controlled-environment breeders.

Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies

Background and Aims

Diurnal changes in solar position and intensity combined with the structural complexity of plant architecture result in highly variable and dynamic light patterns within the plant canopy. This affects productivity through the complex ways that photosynthesis responds to changes in light intensity. Current methods to characterize light dynamics, such as ray-tracing, are able to produce data with excellent spatio-temporal resolution but are computationally intensive and the resulting data are complex and high-dimensional. This necessitates development of more economical models for summarizing the data and for simulating realistic light patterns over the course of a day.

Methods

High-resolution reconstructions of field-grown plants are assembled in various configurations to form canopies, and a forward ray-tracing algorithm is applied to the canopies to compute light dynamics at high (1 min) temporal resolution. From the ray-tracer output, the sunlit or shaded state for each patch on the plants is determined, and these data are used to develop a novel stochastic model for the sunlit-shaded patterns. The model is designed to be straightforward to fit to data using maximum likelihood estimation, and fast to simulate from.

Key Results

For a wide range of contrasting 3-D canopies, the stochastic model is able to summarize, and replicate in simulations, key features of the light dynamics. When light patterns simulated from the stochastic model are used as input to a model of photoinhibition, the predicted reduction in carbon gain is similar to that from calculations based on the (extremely costly) ray-tracer data.

Conclusions

The model provides a way to summarize highly complex data in a small number of parameters, and a cost-effective way to simulate realistic light patterns. Simulations from the model will be particularly useful for feeding into larger-scale photosynthesis models for calculating how light dynamics affects the photosynthetic productivity of canopies.

A Leaf Modeling and Multi-Scale Remeshing Method for Visual Computation via Hierarchical Parametric Vein and Margin Representation

This paper introduces a novel hierarchical structured representation for leaf modeling and proposes a corresponding multi-resolution remeshing method for large-scale visual computation. Leaf modeling is a very difficult and challenging problem due to the wide variations in the shape and structures among different species of plants. Firstly, we introduce a Hierarchical Parametric Veins and Margin (HPVM) representation approach, which describes the leaf biological structures and exact geometry via interpolation of parametric curves from the extracted vein features from non-manifold data. Secondly, a parametric surface model is constructed using HPVM with geometric and structured constraints. Finally, for a given size, we adapt a multi-step discrete point resampling strategy and a CDT-based (Constrained Delaunay Triangulation) meshing method to generate a mesh model. Our representation consists of three coupled data structures, a core hierarchical parametric data structure of veins and margin for the leaf skeleton, the corresponding parametric surface model, and a set of unstructured triangular meshes with user-specified density for the leaf membrane. Numerical experiments show that our method can obtain high quality meshes from the scanned non-manifold mesh data with well-preserved biological structures and geometry. This novel approach is suitable for effective leaf simulation, rendering, texture mapping, and simulation of light distribution in crop canopies.

Estimation of Whole Plant Photosynthetic Rate of Irwin Mango under Artificial and Natural Lights Using a Three-Dimensional Plant Model and Ray-Tracing

Photosynthesis is an important physiological response for determination of CO₂ fertilization in greenhouses and estimation of crop growth. In order to estimate the whole plant photosynthetic rate, it is necessary to investigate how light interception by crops changes with environmental and morphological factors. The objectives of this study were to analyze plant light interception using a three-dimensional (3D) plant model and ray-tracing, determine the spatial distribution of the photosynthetic rate, and estimate the whole plant photosynthetic rate of Irwin mango (Mangifera indica L. cv. Irwin) grown in greenhouses. In the case of mangoes, it is difficult to measure actual light interception at the canopy level due to their vase shape. A two-year-old Irwin mango tree was used to measure the whole plant photosynthetic rate. Light interception and whole plant photosynthetic rate were measured under artificial and natural light conditions using a closed chamber (1 × 1 × 2 m). A 3D plant model was constructed and ray-tracing simulation was conducted for calculating the photosynthetic rate with a two-variable leaf photosynthetic rate model of the plant. Under artificial light, the estimated photosynthetic rate increased from 2.0 to 2.9 μmolCO₂·m^-2·s^-1 with increasing CO₂ concentration. On the other hand, under natural light, the photosynthetic rate increased from 0.2 μmolCO₂·m^-2·s^-1 at 06:00 to a maximum of 7.3 μmolCO₂·m^-2·s^-1 at 09:00, then gradually decreased to -1.0 μmolCO₂·m^-2·s^-1 at 18:00. In validation, simulation results showed good agreement with measured results with R² = 0.79 and RMSE = 0.263. The results suggest that this method could accurately estimate the whole plant photosynthetic rate and be useful for pruning and adequate CO₂ fertilization.