Phytochrome A Protects Tomato Plants From Injuries Induced by Continuous Light

Interplay among photoreceptors determines the strategy of coping with excess light in tomato

This study investigates photoreceptor's role in the adaption of photosynthetic apparatus to high light (HL) intensity by examining the response of tomato wild type (WT) (Solanum lycopersicum L. cv. Moneymaker) and tomato mutants (phyA, phyB1, phyB2, cry1) plants to HL. Our results showed a photoreceptor-dependent effect of HL on the maximum quantum yield of photosystem II (Fv/Fm) with phyB1 exhibiting a decrease, while phyB2 exhibiting an increase in Fv/Fm. HL resulted in an increase in the efficient quantum yield of photosystem II (ΦPSII) and a decrease in the non-photochemical quantum yields (ΦNPQ and ΦN0) solely in phyA. Under HL, phyA showed a significant decrease in the energy-dependent quenching component of NPQ (qE), while phyB2 mutants showed an increase in the state transition (qT) component. Furthermore, ΔΔFv/Fm revealed that PHYB1 compensates for the deficit of PHYA in phyA mutants. PHYA signaling likely emerges as the dominant effector of PHYB1 and PHYB2 signaling within the HL-induced signaling network. In addition, PHYB1 compensates for the role of CRY1 in regulating Fv/Fm in cry1 mutants. Overall, the results of this research provide valuable insights into the unique role of each photoreceptor and their interplay in balancing photon energy and photoprotection under HL condition.

Nutrient availability and plant phenological stage influence the substrate microbiome in container-grown Impatiens walleriana 'Xtreme Red'

BACKGROUND

The microbiome plays a fundamental role in plant health and performance. Soil serves as a reservoir of microbial diversity where plants attract microorganisms via root exudates. The soil has an important impact on the composition of the rhizosphere microbiome, but greenhouse ornamental plants are commonly grown in soilless substrates. While soil microbiomes have been extensively studied in traditional agriculture to improve plant performance, health, and sustainability, information about the microbiomes of soilless substrates is still limited. Thus, we conducted an experiment to explore the microbiome of a peat-based substrate used in container production of Impatiens walleriana, a popular greenhouse ornamental plant. We investigated the effects of plant phenological stage and fertilization level on the substrate microbiome.

RESULTS

Impatiens plants grown under low fertilization rates were smaller and produced more flowers than plants grown under optimum and high fertilization. The top five bacterial phyla present in the substrate were Proteobacteria, Actinobacteria, Bacteriodota, Verrucomicrobiota, and Planctomycetota. We found a total of 2,535 amplicon sequence variants (ASV) grouped into 299 genera. The substrate core microbiome was represented by only 1.8% (48) of the identified ASV. The microbiome community composition was influenced by plant phenological stage and fertilizer levels. Phenological stage exhibited a stronger influence on microbiome composition than fertilizer levels. Differential abundance analysis using DESeq2 identified more ASVs significantly affected (enriched or depleted) in the high fertilizer levels at flowering. As observed for community composition, the effect of plant phenological stage on microbial community function was stronger than fertilizer level. Phenological stage and fertilizer treatments did not affect alpha-diversity in the substrate.

CONCLUSIONS

In container-grown ornamental plants, the substrate serves as the main microbial reservoir for the plant, and the plant and agricultural inputs (fertilization) modulate the microbial community structure and function of the substrate. The differences observed in substrate microbiome composition across plant phenological stage were explained by pH, total organic carbon (TOC) and fluoride, and across fertilizer levels by pH and phosphate (PO4). Our project provides an initial diversity profile of the bacteria occurring in soilless substrates, an underexplored source of microbial diversity.

Potential Role of Phytochromes A and B and Cryptochrome 1 in the Adaptation of Solanum lycopersicum to UV-B Radiation

UV-B causes both damage to the photosynthetic apparatus (PA) and the activation of specific mechanisms that protect the PA from excess energy and trigger a cascade of regulatory interactions with different photoreceptors, including phytochromes (PHYs) and cryptochromes (CRYs). However, the role of photoreceptors in plants' responses to UV-B radiation remains undiscovered. This study explores some of these responses using tomato photoreceptor mutants (phya, phyb1, phyab2, cry1). The effects of UV-B exposure (12.3 µmol (photons) m-2 s-1) on photosynthetic rates and PSII photochemical activity, the contents of photosynthetic and UV-absorbing pigments and anthocyanins, and the nonenzymatic antioxidant capacity (TEAC) were studied. The expression of key light-signaling genes, including UV-B signaling and genes associated with the biosynthesis of chlorophylls, carotenoids, anthocyanins, and flavonoids, was also determined. Under UV-B, phyab2 and cry1 mutants demonstrated a reduction in the PSII effective quantum yield and photosynthetic rate, as well as a reduced value of TEAC. At the same time, UV-B irradiation led to a noticeable decrease in the expression of the ultraviolet-B receptor (UVR8), repressor of UV-B photomorphogenesis 2 (RUP2), cullin 4 (CUL4), anthocyanidin synthase (ANT), phenylalanine ammonia-lease (PAL), and phytochrome B2 (PHYB2) genes in phyab2 and RUP2, CUL4, ANT, PAL, and elongated hypocotyl 5 (HY5) genes in the cry1 mutant. The results indicate the mutual regulation of UVR8, PHYB2, and CRY1 photoreceptors, but not PHYB1 and PHYA, in the process of forming a response to UV-B irradiation in tomato.

Artificial neural network (ANN)-based algorithms for high light stress phenotyping of tomato genotypes using chlorophyll fluorescence features

High light (HL) is a common environmental stress directly imposes photoinhibition on the photosynthesis apparatus. Breeding plants for tolerance against HL is therefore highly demanded. Chlorophyll fluorescence (ChlF) is a sensitive indicator of stress in plants and can be evaluated using OJIP transients. In this study, we compared the ChlF features of plants exposed to HL (1200 μmol m-2 s-1) with that of control plants (300 μmol m-2 s-1). To extract the most reliable ChlF features for discrimination between HL-stressed and non-stressed plants, we applied three artificial neural network (ANN)-based algorithms, namely, Boruta, Support Vector Machine (SVM), and Recursive Feature Elimination (RFE). Feature selection algorithms identified multiple features but only two features, namely the maximal quantum yield of PSII photochemistry (FV/FM) and quantum yield of energy dissipation (ɸD0), remained consistent across all genotypes in control conditions, while exhibited variation in HL. Therefore, considered reliable features for HL stress screening. The selected features were then used for screening 14 tomato genotypes for HL. Genotypes were categorized into three groups, tolerant, semi-tolerant, and sensitive genotypes. Foliar hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents were measured as independent proxies for benchmarking selected features. Tolerant genotypes were attributed with the lowest change in H2O2 and MDA contents, while the sensitive genotypes displayed the highest magnitude of increase in H2O2 and MDA by HL treatment compared to the control. Finally, a FV/FM higher than 0.77 and ɸD0 lower than 0.24 indicates a healthy electron transfer chain (ETC) when tomato plants are exposed to HL.

Shedding light on the effects of LED streetlamps on trees in urban areas: Friends or foes?

Streetlamp illumination disturbs the natural physiological processes and circadian rhythms of living organisms, including photosynthesizing "citizens". The light-emitting diode (LED) technology has replaced high-pressure sodium lamps. Therefore, the effects of LED streetlamps on urban trees need to be elucidated as these new lamps have a different light spectrum (with a peak in the blue and red regions of the spectrum, i.e., highly efficient wavebands for photosynthesis) compared to older technologies. To address the above-mentioned issue, two widely utilised tree species in the urban environment, including Platanus × acerifolia (P) and Tilia platyphyllos (T), were grown with or without the effect of LED streetlamps using two realistic illumination intensities (300 and 700 μmol m^-2 s^-1). Gas exchanges and biochemical features (starch, soluble sugar, and chlorophyll content) of illuminated vs non-illuminated trees were compared during the whole vegetative season. Our results showed that both tree species were strongly influenced by LED streetlamps at physiological and biochemical levels. Specifically, the mature leaves of P and T streetlamp-illuminated trees had a lower CO₂ assimilation rate at dawn and had higher chlorophyll content, with lower starch content than controls. Our results showed that the differences between the effects of the two selected light intensities on the physiochemical attributes of P and T trees were not statistically significant, suggesting the absence of a dose-dependent effect. The most significant difference between T and P trees concerning the LED-triggered species-specific effect was that the delay in winter dormancy occurred only in P individuals. This study provided insights into the extent of LED streetlamp disturbance on trees. Our findings might raise awareness of the necessity to provide less impacting solutions to improve the wellness of trees in the urban environment.

Light Intensity- and Spectrum-Dependent Redox Regulation of Plant Metabolism

Both light intensity and spectrum (280–800 nm) affect photosynthesis and, consequently, the formation of reactive oxygen species (ROS) during photosynthetic electron transport. ROS, together with antioxidants, determine the redox environment in tissues and cells, which in turn has a major role in the adjustment of metabolism to changes in environmental conditions. This process is very important since there are great spatial (latitude, altitude) and temporal (daily, seasonal) changes in light conditions which are accompanied by fluctuations in temperature, water supply, and biotic stresses. The blue and red spectral regimens are decisive in the regulation of metabolism because of the absorption maximums of chlorophylls and the sensitivity of photoreceptors. Based on recent publications, photoreceptor-controlled transcription factors such as ELONGATED HYPOCOTYL5 (HY5) and changes in the cellular redox environment may have a major role in the coordinated fine-tuning of metabolic processes during changes in light conditions. This review gives an overview of the current knowledge of the light-associated redox control of basic metabolic pathways (carbon, nitrogen, amino acid, sulphur, lipid, and nucleic acid metabolism), secondary metabolism (terpenoids, flavonoids, and alkaloids), and related molecular mechanisms. Light condition-related reprogramming of metabolism is the basis for proper growth and development of plants; therefore, its better understanding can contribute to more efficient crop production in the future.

A Perspective Emphasizing Circadian Rhythm Entrainment to Ensure Sustainable Crop Production in Controlled Environment Agriculture: Dynamic Use of LED Cues

World-wide, sustainable crop production is increasingly dependent on the protection of crops from adverse local climate conditions by using controlled environment agriculture (CEA) facilities. Today's greenhouses and plant factories are becoming very technologically advanced. Important breakthroughs in our understanding of the deployment of affordable artificial lighting systems that can supplement and even replace solar radiation is the subject of this perspective article. The key to improving sustainable CEA is to synchronize those environmental cues that best entrain the natural circadian rhythm of the crop. Patterns of circadian rhythms reflect the balance of daily metabolic cycles and phenological stages of development that integrate and anticipate environmental changes for all complex organisms. Within the last decade, our understanding of the use of light-emitting diodes (LEDs) as spectrally tunable tools for stimulating plant responses has expanded rapidly. This perspective proposes that extending the photoperiod in CEA is an economically sustainable goal to for year-round productivity of tomato, using dynamic LED shifts that entrain the circadian rhythm. When the photoperiod is extended too far, tomato experiences injury. To avoid yield reduction, we look to nature for clues, and how circadian rhythms evolved in general to long-photoperiods during the summer in high-latitudes. It follows that circadian rhythm traits are good targets for breeders to select new tomato cultivars suitable for CEA. Circadian rhythm entrainment, using dynamic LED cues, can be tailored to any latitude-of-origin crop, and thus expands the strategies ensuring sustainable food security including healthy diets locally in any region of the world.

SpaceHort: redesigning plants to support space exploration and on-earth sustainability

Crewed missions to Mars are planned within the next twenty years. Production of food and materials in situ will eventually be necessary for mission success. This will require the development of crops which can thrive in environments we can sustain in Space. Here, we discuss the challenges we must solve to provide adequate nutrition to support long term Space habitation. Further, we propose that plants are an ideal biomanufacturing platform for producing pharmaceuticals and biomaterials on demand. Designing Space plants requires advances in our ability to engineer plant biology in a predictive manner. Parallel development of suitable tightly controlled growth environments, including extensive monitoring and sensing, will also be a key enabler. Collectively, such research promises to deliver solutions for progressing sustainable closed environment agriculture on Earth.

Light Spectra and Root Stocks Affect Response of Greenhouse Tomatoes to Long Photoperiod of Supplemental Lighting

Plant biomass and yield are largely dictated by the total amount of light intercepted by the plant (daily light integral (DLI)—intensity × photoperiod). It is more economical to supply the desired DLI with a long photoperiod of low-intensity light because it uses fewer light fixtures, reducing capital costs. Furthermore, heat released by the light fixtures under a long photoperiod extended well into the night helps to meet the heating requirement during the night. However, extending the photoperiod beyond a critical length (>17 h) may be detrimental to production and lead to leaf chlorosis and a reduction in leaf growth and plant vigor in greenhouse tomato production. It is known that red light can increase leaf growth and plant vigor, as can certain rootstocks, which could compensate for the loss in plant vigor and leaf growth from long photoperiods. Therefore, this study investigated the response of tomatoes grafted onto different rootstocks to a long photoperiod of lighting under red and other light spectra. Tomato plants ‘Trovanzo’ grafted onto ‘Emperator’ or ‘Kaiser’ were subjected to two spectral compositions—100% red or a mix of red (75%), blue (20%), and green (5%) light for 17 h or 23 h. The four treatments supplied similar DLI. Leaf chlorosis appeared in all plants under 23 h lighting regardless of spectral compositions between 20 and 54 days into the treatment. The yield for 23 h mixed lighting treatment was lower than both 17 h lighting treatments. However, the 23 h red lighting treatment resulted in less leaf chlorosis and the plants grafted onto ‘Emperator’ produced a similar yield as both 17 h lighting treatments. Therefore, both spectral compositions and rootstocks affected the response of greenhouse tomatoes to long photoperiods of lighting. With red light and proper rootstock, the negative yield impact from long photoperiod lighting can be eliminated.

Histidine Kinases: Diverse Functions in Plant Development and Responses to Environmental Conditions

The two-component system (TCS), which is one of the most evolutionarily conserved signaling pathway systems, has been known to regulate multiple biological activities and environmental responses in plants. Significant progress has been made in characterizing the biological functions of the TCS components, including signal receptor histidine kinase (HK) proteins, signal transducer histidine-containing phosphotransfer proteins, and effector response regulator proteins. In this review, our scope is focused on the diverse structure, subcellular localization, and interactions of the HK proteins, as well as their signaling functions during development and environmental responses across different plant species. Based on data collected from scientific studies, knowledge about acting mechanisms and regulatory roles of HK proteins is presented. This comprehensive summary ofthe HK-related network provides a panorama of sophisticated modulating activities of HK members and gaps in understanding these activities, as well as the basis for developing biotechnological strategies to enhance the quality of crop plants.

Effect of high-intensity light and UV-B on photosynthetic activity and the expression of certain light-responsive genes in A. thaliana phyA and phyB mutants

The effects of high-intensity light (HIL, 4 and 24 h) and UV-B (1 h) on the net photosynthesis rate, activity of photosystem II (PSII), content of photosynthetic pigments, anthocyanin and UV-absorbing pigments as well as the expression of certain light-responsive genes (HY5,CAB1) chalcone synthase (CHS) and main antioxidants enzyme genes (APX1, GPX and GR) in the leaves of phyB and phyA mutant A. thaliana plants were studied. Both UV-B and 4 and 24 h HIL decreased the PSII maximum quantum yield (F_v/F_m), PSII performance index (PI_ABS), photosynthesis and respiration rates in plants. Moreover, all stress treatments increased the dissipation of the absorbed energy (DI₀/RC) as well as the flux of absorbed energy per RC (ABS/RC). The maximal changes in photosynthesis and chlorophyll fluorescence parameters were observed in the phyB mutant. The WT and the phyA mutant showed similar responses. In addition, the phyB mutant exhibited decreases in the expression of genes encoding enzyme CHS, the transcription factor HY5 and the antioxidant enzymes APX1 and GPX. One of the possible mechanisms protecting the photosynthetic apparatus from light excess or UV radiation is the elevated content of various pigments that can act as antioxidants or optical filters. We assume that the greater decrease in photosynthetic activity in the phyB mutant under HIL and UV-B conditions was due to the decreased content of carotenoids and UV-absorbing pigments in this mutant.

Continuous Light Does Not Compromise Growth and Yield in Mini-Cucumber Greenhouse Production with Supplemental LED Light

Continuous lighting (CL, 24 h) can reduce the light intensity/light capital costs used to achieve the desired amount of light for year-round greenhouse vegetable production in comparison to short photoperiods of lighting. However, growth under CL has led to leaf injury characterized by chlorosis unless a thermoperiod or alternating light spectrum during CL is used. To date, there is no literature relating to how cucumbers (Cucumissativus) respond to CL with LEDs in a full production cycle. Here, we evaluated a mini-cucumber cv. "Bonwell" grown under 4 supplemental lighting strategies: Treatment 1 (T1, the control) was 16 h of combined red light and blue light followed by 8 h of darkness. Treatment 2 (T2) had continuous (24 h) red light and blue light. Treatment 3 (T3) was 16 h of red light followed by 8 h of blue light. Treatment 4 (T4) was 12 h of red light followed by 12 h of blue light. All treatments had a supplemental daily light integral (DLI) of ~10 mol m-2 d-1. Plants from all treatments showed similar growth characteristics throughout the production cycle. However, plants grown under all three CL treatments had higher chlorophyll concentrations from leaves at the top of the canopy when compared to T1. The overall photosynthetic capacity, light use efficiency, and photosynthetic parameters related to light response curves (i.e., dark respiration, light compensation point, quantum yield, and photosynthetic maximum), as well as the quantum yield of photosystem II (PSII; Fv/Fm) were similar among the treatments. Plants grown under all CL treatments produced a similar yield compared to the control treatment (T1). These results indicate that mini-cucumber cv. "Bonwell" is tolerant to CL, and CL is a viable and economical lighting strategy for mini-cucumber production.

Comparative analysis of two phytochrome mutants of tomato (Micro-Tom cv.) reveals specific physiological, biochemical, and molecular responses under chilling stress

Background

Phytochromes are plant photoreceptors that have long been associated with photomorphogenesis in plants; however, more recently, their crucial role in the regulation of variety of abiotic stresses has been explored. Chilling stress is one of the abiotic factors that severely affect growth, development, and productivity of crops. In the present work, we have analyzed and compared physiological, biochemical, and molecular responses in two contrasting phytochrome mutants of tomato, namely aurea (aur) and high pigment1 (hp1), along with wild-type cultivar Micro-Tom (MT) under chilling stress. In tomato, aur is phytochrome-deficient mutant while hp1 is a phytochrome-sensitive mutant. The genotype-specific physiological, biochemical, and molecular responses under chilling stress in tomato mutants strongly validated phytochrome-mediated regulation of abiotic stress.

Results

Here, we demonstrate that phytochrome-sensitive mutant hp1 show improved performance compared to phytochrome-deficient mutant aur and wild-type MT plants under chilling stress. Interestingly, we noticed significant increase in several photosynthetic-related parameters in hp1 under chilling stress that include photosynthetic rate, stomatal conductance, stomatal aperture, transpiration rate, chlorophyll a and carotenoids. Whereas most parameters were negatively affected in aur and MT except a slight increase in carotenoids in MT plants under chilling stress. Further, we found that PSII quantum efficiency (Fv/Fm), PSII operating efficiency (Fq′/Fm′), and non-photochemical quenching (NPQ) were all positively regulated in hp1, which demonstrate enhanced photosynthetic performance of hp1 under stress. On the other hand, Fv/Fm and Fq′/Fm′ were decreased significantly in aur and wild-type plants. In addition, NPQ was not affected in MT but declined in aur mutant after chilling stress. Noticeably, the transcript analysis show that PHY genes which were previously reported to act as molecular switches in response to several abiotic stresses were mainly induced in hp1 and repressed in aur and MT in response to stress. As expected, we also found reduced levels of malondialdehyde (MDA), enhanced activities of antioxidant enzymes, and higher accumulation of protecting osmolytes (soluble sugars, proline, glycine betaine) which further elaborate the underlying tolerance mechanism of hp1 genotype under chilling stress.

Conclusion

Our findings clearly demonstrate that phytochrome-sensitive and phytochrome-deficient tomato mutants respond differently under chilling stress thereby regulating physiological, biochemical, and molecular responses and thus establish a strong link between phytochromes and their role in stress tolerance.

Supplementary Information

The online version contains supplementary material available at 10.1186/s43141-020-00091-1.

Alternating Red and Blue Light-Emitting Diodes Allows for Injury-Free Tomato Production With Continuous Lighting

Plant biomass is largely dictated by the total amount of light intercepted by the plant [daily light integral (DLI) - intensity × photoperiod]. Continuous light (CL, 24 h lighting) has been hypothesized to increase plant biomass and yield if CL does not cause any injury. However, lighting longer than 18 h causes leaf injury in tomato characterized by interveinal chlorosis and yield is no longer increased with further photoperiod extension in tomatoes. Our previous research indicated the response of cucumbers to long photoperiod of lighting varies with light spectrum. Therefore, we set out to examine greenhouse tomato production under supplemental CL using an alternating red (200 µmol m-2 s-1, 06:00-18:00) and blue (50 µmol m-2 s-1, 18:00-06:00) spectrum in comparison to a 12 h supplemental lighting treatment with a red/blue mixture (200 µmol m-2 s-1 red + 50 µmol m-2 s-1 blue, 06:00-18:00) at the same DLI. Our results indicate that tomato plants grown under supplemental CL using the red and blue alternating spectrum were injury-free. Furthermore, parameters related to photosynthetic performance (i.e., Pnmax, quantum yield, and Fv/Fm) were similar between CL and 12 h lighting treatments indicating no detrimental effect of growth under CL. Leaves under CL produced higher net carbon exchange rates (NCER) during the subjective night period (18:00-06:00) compared to plants grown under 12 h lighting. Notably, 53 days into the treatment, leaves grown under CL produced positive NCER values (photosynthesis) during the subjective night period, a period typically associated with respiration. At 53 days into the growth cycle, it is estimated that leaves under CL will accumulate approximately 800 mg C m-2 more than leaves under 12 h lighting over a 24 h period. Leaves grown under CL also displayed similar diurnal patterns in carbohydrates (glucose, fructose, sucrose, and starch) as leaves under 12 h lighting indicating no adverse effects on carbohydrate metabolism under CL. Taken together, this study provides evidence that red and blue spectral alternations during CL allow for injury-free tomato production. We suggest that an alternating spectrum during CL may alleviate the injury typically associated with CL production in tomato.