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Maxwell MWH, Causier BE, Chippendale J, Ault JR, Bell CA. Diet-regulated transcriptional plasticity of plant parasites in plant-mutualist environments. Proc Natl Acad Sci U S A 2025; 122:e2421367122. [PMID: 40244681 PMCID: PMC12037023 DOI: 10.1073/pnas.2421367122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Accepted: 03/12/2025] [Indexed: 04/18/2025] Open
Abstract
Crop pathogens often lack exclusive access to their host and must interact with plants concurrently engaged with numerous other symbionts. Here, we demonstrate that the colonization of hosts by plant-mutualistic mycorrhizal fungi can indirectly induce transcriptional responses of a major plant parasite, the nematode Globodera pallida, via a modified host resource profile. A shift in the resource profile of the root, where the parasite feeds, is perceived and responded to by the parasite through transcriptional changes, potentially to optimize resource intake. Specifically, G. pallida react to reduced host-photosynthate influx due to concurrent mycorrhizal-host symbiosis by upregulating the expression of a sugar transporter (SWEET3) in the nematode intestine. We identify this gene's role in parasite growth and development, regulated by the putative diet-responsive transcription factor Gp-HBL1. Overall, our data unveil a mechanism by which a parasitic animal responds to fluctuations in host plant quality that is induced by a plant-mutualistic fungus, to enhance parasitism and reproduction.
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Affiliation(s)
- M. Willow H. Maxwell
- School of Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - Barry E. Causier
- School of Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - Jasper Chippendale
- School of Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - James R. Ault
- School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - Chris A. Bell
- School of Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
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2
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Leuenberger J, Esnault F, Lebas PL, Fournet S, Cann MP, Marhadour S, Prodhomme C, Pilet-Nayel ML, Kerlan MC. Identification by GWAS of marker haplotypes relevant to breed potato for Globodera pallida resistance. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2025; 138:52. [PMID: 39992466 PMCID: PMC11850554 DOI: 10.1007/s00122-024-04794-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Accepted: 11/30/2024] [Indexed: 02/25/2025]
Abstract
KEY MESSAGE Identified and validated QTL GpaVa_MRQ and GpaIX_MRQ provide robust tools for improving potato resistance to Globodera pallida via marker-assisted selection. Potato (Solanum tuberosum L.), a vital food crop globally, faces significant yield losses due to potato cyst nematodes (PCN). This study aimed to identify and validate genomic regions conferring resistance to Globodera pallida, to facilitate the development of resistant potato varieties through marker-assisted selection (MAS). We conducted Genome-Wide Association Studies (GWAS) on a pre-breeding panel genotyped using Genotyping by Sequencing (GBS) and the SolCAP DNA array. Significant resistance-associated SNP markers were identified on chromosomes III, IV, V, IX and XI. Quantitative trait loci (QTL), including the major-effect QTL GpaVa_MRQ on chromosome V and the QTL GpaIX_MRQ on chromosome IX, were validated and shown to account for substantial phenotypic variance in a validation potato panel. Haplotype-based marker sets were defined at four QTL regions, enabling the practical application of MAS. The successful conversion of SNPs to PACE markers at the two main QTL GpaVa_MRQ and GpaIX_MRQ further supports their use in breeding programs. This study provides valuable insights and robust tools for enhancing potato resistance to G. pallida, contributing to sustainable agricultural practices and global food security.
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Affiliation(s)
- J Leuenberger
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Ploudaniel, France.
- Association Des Créateurs de Variétés Nouvelles de Pomme de Terre (ACVNPT), Paris, France.
| | - F Esnault
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Ploudaniel, France
| | - P L Lebas
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Ploudaniel, France
| | - S Fournet
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Le Rheu, France
| | - M P Cann
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Ploudaniel, France
| | - S Marhadour
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Ploudaniel, France
- Inov3PT, Recherche, Développement, Innovation des Producteurs de Plants de Pomme de Terre, Paris, France
| | - C Prodhomme
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Le Rheu, France
- Inov3PT, Recherche, Développement, Innovation des Producteurs de Plants de Pomme de Terre, Paris, France
| | - M L Pilet-Nayel
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Le Rheu, France
| | - M C Kerlan
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP), INRAE, Institut Agro, Univ Rennes, Ploudaniel, France
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3
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Lechevalier O, Gazengel K, Esquibet M, Fournet S, Grenier E, Daval S, Montarry J. Identification through a transcriptomic approach of candidate genes involved in the adaptation of the cyst nematode Globodera pallida to the potato resistance factor GpaV vrn. BMC Genomics 2025; 26:191. [PMID: 39994529 PMCID: PMC11852814 DOI: 10.1186/s12864-025-11332-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Accepted: 02/06/2025] [Indexed: 02/26/2025] Open
Abstract
BACKGROUND Since the banning of chemical products used to control plant-parasitic nematode populations, the use of resistant plants has become the most effective management approach against the potato cyst nematode Globodera pallida. However, some populations, from experimental evolution setups and field samplings, are able to overcome these resistances. Herein, a transcriptomics approach was used to disentangle the mechanisms by which G. pallida adapts to the plant resistant factor GpaVvrn, and to elucidate the functions involved in this adaptation. RESULTS Differential gene expression analysis between virulent and avirulent lineages originating from experimental evolution experiments identified candidate genes involved in the adaptation to GpaVvrn. GO enrichment analyses showed that virulent lineages up-regulated genes involved in cell wall destruction and stress response compared to avirulent lineages. In virulent lineages, a set of genes was up-regulated later in the parasitism stages and are thus potentially involved in adaptation. These genes encode effectors of the VAP and SPRYSEC families contributing to the suppression of plant immunity. CONCLUSION These results will have a major impact on our understanding of the mechanisms by which nematodes adapt to resistant plants, and will contribute to identify effective and sustainable management strategies.
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Affiliation(s)
| | - Kévin Gazengel
- IGEPP, INRAE, Institut Agro, Univ Rennes, Le Rheu, France
| | | | | | - Eric Grenier
- IGEPP, INRAE, Institut Agro, Univ Rennes, Le Rheu, France
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4
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Bairwa A, Dipta B, Siddappa S, Singh B, Sharma N, Naga KC, Mhatre PH, Sharma S, Venkatasalam EP, Singh B. Kaolinite nanoclay-shielded dsRNA drenching for management of Globodera pallida: An environmentally friendly pest management approach. PROTOPLASMA 2024; 261:965-974. [PMID: 38607379 DOI: 10.1007/s00709-024-01950-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Accepted: 03/28/2024] [Indexed: 04/13/2024]
Abstract
Globodera pallida, an obligate sedentary endoparasite, is a major economic pest that causes substantial potato yield losses. This research aimed to study the effects of gene silencing of three FMRFamide-like peptides (FLPs) genes to reduce G. pallida infestation on potato plants by using kaolinite nanoclay as a carrier to deliver dsRNAs via drenching. A dsRNA dosage of 2.0 mg/ml silenced flp-32c by 89.5%, flp-32p by 94.6%, and flp-2 by 94.3%. J2s incubated for 5 and 10 h showed no phenotypic changes. However, J2s of G. pallida efficiently uptake dsRNA of all targeted genes after 15 h of incubation. On the other hand, J2s that had been kept for 24 h had a rigid and straight appearance. Under fluorescence microscopy, all dsRNA-treated nematodes showed fluorescein isothiocyanate (FITC) signals in the mouth, nervous system, and digestive system. The untreated population of J2s did not show any FITC signals and was mobile as usual. The drenching of potato cultivar Kufri Jyoti with the dsRNA-kaolinite formulations induced deformation and premature death of J2s, compared with untreated J2s that entered J3 or J4 stages. This study validates that the nanocarrier-delivered RNAi system could be employed effectively to manage G. pallida infestations.
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Affiliation(s)
- Aarti Bairwa
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India.
| | - Bhawna Dipta
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India.
| | - Sundaresha Siddappa
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
| | - Baljeet Singh
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
| | - Neha Sharma
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
| | - Kailash C Naga
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
| | - Priyank H Mhatre
- ICAR-Central Potato Research Station, Udhagamandalam, 643004, Tamil Nadu, India
| | - Sanjeev Sharma
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
| | - E P Venkatasalam
- ICAR-Central Potato Research Station, Udhagamandalam, 643004, Tamil Nadu, India
| | - Brajesh Singh
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
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5
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Wang L, Yan X, Tang Z. Joint Impacts of Meloidogyne incognita and Soil Nutrition on Solanum lycopersicum var. cerasiforme. PLANT DISEASE 2024; 108:1252-1260. [PMID: 38709560 DOI: 10.1094/pdis-10-23-2058-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Strategies for plant nutrient resource allocation under Meloidogyne spp. infection and different soil nutrient conditions are not well established. In response, the objectives of this research are to determine if increased vegetative growth of Solanum lycopersicon var. cerasiforme (cherry tomato) under high nutrition enhances resistance to M. incognita and whether adaptive strategies for growth, reproduction, and nutrient uptake by cherry tomato infected with M. incognita alter nutrient availability. The study was conducted under greenhouse conditions using high, medium, and low soil nutrient regimes. The research results indicate that the total biomass of cherry tomato was less in the presence of M. incognita infection under all three nutrient conditions, compared with plants grown in the absence of this nematode. However, the increase in the root/shoot ratio indicates that cherry tomato allocated more resources to belowground organs. Under the combined impacts of M. incognita infection and low or medium soil nutrition, the nitrogen content in root system tissues and the phosphorus content in shoot system tissues were increased to meet the nutrient requirements of galled root tissue and plant fruit production. It is suggested that plants increase the allocation of reproductive resources to fruits by improving phosphorus transportation to the aboveground reproductive tissues under low and medium nutrient conditions. Overall, the study highlights a significant impact of soil nutrient levels on the growth and resource allocation associated with M. incognita-infected cherry tomato. In response, soil nutrient management is another practice for reducing the impacts of plant-parasitic nematodes on crop production.
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Affiliation(s)
- Lei Wang
- School of Environment, State Environmental Protection Key Laboratory of Wetland Ecology and Vegetation Restoration, Key Laboratory for Vegetation Ecology, Ministry of Education, Northeast Normal University, 130117, Changchun, China
- College of Life Science, Nankai University, 300071, Tianjin, China
| | - Xingfu Yan
- College of Biological Science and Engineering, North Minzu University, Key Laboratory of Ecological Protection of Agro-Pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of the People's Republic of China, 750030, Yinchuan, China
| | - Zhanhui Tang
- School of Environment, State Environmental Protection Key Laboratory of Wetland Ecology and Vegetation Restoration, Key Laboratory for Vegetation Ecology, Ministry of Education, Northeast Normal University, 130117, Changchun, China
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6
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Gartner U, Armstrong MR, Sharma SK, Jones JT, Blok VC, Hein I, Bryan GJ. Characterisation and mapping of a Globodera pallida resistance derived from the wild potato species Solanum spegazzinii. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024; 137:106. [PMID: 38622441 PMCID: PMC11018675 DOI: 10.1007/s00122-024-04605-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 03/18/2024] [Indexed: 04/17/2024]
Abstract
KEY MESSAGE A new resistance locus acting against the potato cyst nematode Globodera pallida was mapped to chromosome VI in the diploid wild potato species Solanum spegazzinii CPC 7195. The potato cyst nematodes (PCN) Globodera pallida and Globodera rostochiensis are economically important potato pests in almost all regions where potato is grown. One important management strategy involves deployment through introgression breeding into modern cultivars of new sources of naturally occurring resistance from wild potato species. We describe a new source of resistance to G. pallida from wild potato germplasm. The diploid species Solanum spegazzinii Bitter accession CPC 7195 shows resistance to G. pallida pathotypes Pa1 and Pa2/3. A cross and first backcross of S. spegazzinii with Solanum tuberosum Group Phureja cultivar Mayan Gold were performed, and the level of resistance to G. pallida Pa2/3 was determined in progeny clones. Bulk-segregant analysis (BSA) using generic mapping enrichment sequencing (GenSeq) and genotyping-by-sequencing were performed to identify single-nucleotide polymorphisms (SNPs) that are genetically linked to the resistance, using S. tuberosum Group Phureja clone DM1-3 516 R44 as a reference genome. These SNPs were converted into allele-specific PCR assays, and the resistance was mapped to an interval of roughly 118 kb on chromosome VI. This newly identified resistance, which we call Gpa VIlspg, can be used in future efforts to produce modern cultivars with enhanced and broad-spectrum resistances to the major pests and pathogens of potato.
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Affiliation(s)
- Ulrike Gartner
- Cell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- School of Biology, University of St Andrews, St Andrews, KY16 9, UK
| | | | - Sanjeev K Sharma
- Cell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - John T Jones
- Cell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- School of Biology, University of St Andrews, St Andrews, KY16 9, UK
| | - Vivian C Blok
- Cell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Ingo Hein
- Cell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
- School of Life Sciences, University of Dundee, Dundee, UK.
| | - Glenn J Bryan
- Cell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
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7
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Bali S, Gleason C. Unveiling the Diversity: Plant Parasitic Nematode Effectors and Their Plant Interaction Partners. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2024; 37:179-189. [PMID: 37870371 DOI: 10.1094/mpmi-09-23-0124-fi] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2023]
Abstract
Root-knot and cyst nematodes are two groups of plant parasitic nematodes that cause the majority of crop losses in agriculture. As a result, these nematodes are the focus of most nematode effector research. Root-knot and cyst nematode effectors are defined as secreted molecules, typically proteins, with crucial roles in nematode parasitism. There are likely hundreds of secreted effector molecules exuded through the nematode stylet into the plant. The current research has shown that nematode effectors can target a variety of host proteins and have impacts that include the suppression of plant immune responses and the manipulation of host hormone signaling. The discovery of effectors that localize to the nucleus indicates that the nematodes can directly modulate host gene expression for cellular reprogramming during feeding site formation. In addition, plant peptide mimicry by some nematode effectors highlights the sophisticated strategies the nematodes employ to manipulate host processes. Here we describe research on the interactions between nematode effectors and host proteins that will provide insights into the molecular mechanisms underpinning plant-nematode interactions. By identifying the host proteins and pathways that are targeted by root-knot and cyst nematode effectors, scientists can gain a better understanding of how nematodes establish feeding sites and subvert plant immune responses. Such information will be invaluable for future engineering of nematode-resistant crops, ultimately fostering advancements in agricultural practices and crop protection. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 "No Rights Reserved" license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2024.
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Affiliation(s)
- Sapinder Bali
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, U.S.A
| | - Cynthia Gleason
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, U.S.A
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8
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Afzal A, Mukhtar T. Revolutionizing nematode management to achieve global food security goals - An overview. Heliyon 2024; 10:e25325. [PMID: 38356601 PMCID: PMC10865254 DOI: 10.1016/j.heliyon.2024.e25325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 12/07/2023] [Accepted: 01/24/2024] [Indexed: 02/16/2024] Open
Abstract
Nematodes are soil-dwelling organisms that inflict substantial damage to crops, resulting in significant declines in agricultural productivity. Consequently, they are recognized as one of the primary contributors to global crop damage, with profound implications for food security. Nematology research assumes a pivotal role in tackling this issue and safeguarding food security. The pursuit of nematology research focused on mitigating nematode-induced crop damage and promoting sustainable agriculture represents a fundamental strategy for enhancing food security. Investment in nematology research is crucial to advance food security objectives by identifying and managing nematode species, developing novel technologies, comprehending nematode ecology, and strengthening the capabilities of researchers and farmers. This endeavor constitutes an indispensable step toward addressing one of the most pressing challenges in achieving global food security and promoting sustainable agricultural practices. Primarily, research endeavors facilitate the identification of nematode species responsible for crop damage, leading to the development of effective management strategies. These strategies encompass the utilization of resistant crop varieties, implementation of cultural practices, biological control, and chemical interventions. Secondly, research efforts contribute to the development of innovative technologies aimed at managing nematode populations, such as gene editing techniques that confer resistance to nematode infestations in crops. Additionally, the exploration of beneficial microbes, such as certain fungi and bacteria, as potential biocontrol agents against nematodes, holds promise. The study of nematode ecology represents a foundational research domain that fosters a deeper comprehension of nematode biology and ecological interactions. This knowledge is instrumental in devising precise and efficacious management strategies.
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Affiliation(s)
- Amir Afzal
- Barani Agricultural Research Institute, Chakwal, Pakistan
- Department of Plant Pathology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi, Pakistan
| | - Tariq Mukhtar
- Department of Plant Pathology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi, Pakistan
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9
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Wang Y, Brown LH, Adams TM, Cheung YW, Li J, Young V, Todd DT, Armstrong MR, Neugebauer K, Kaur A, Harrower B, Oome S, Wang X, Bayer M, Hein I. SMRT-AgRenSeq-d in potato ( Solanum tuberosum) as a method to identify candidates for the nematode resistance Gpa5. HORTICULTURE RESEARCH 2023; 10:uhad211. [PMID: 38023472 PMCID: PMC10681002 DOI: 10.1093/hr/uhad211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Accepted: 10/10/2023] [Indexed: 12/01/2023]
Abstract
Potato is the third most important food crop in the world. Diverse pathogens threaten sustainable crop production but can be controlled, in many cases, through the deployment of disease resistance genes belonging to the family of nucleotide-binding, leucine-rich-repeat (NLR) genes. To identify effective disease resistance genes in established varieties, we have successfully established SMRT-AgRenSeq in tetraploid potatoes and have further enhanced the methodology by including dRenSeq in an approach that we term SMR-AgRenSeq-d. The inclusion of dRenSeq enables the filtering of candidates after the association analysis by establishing a presence/absence matrix across resistant and susceptible varieties that is translated into an F1 score. Using a SMRT-RenSeq-based sequence representation of the NLRome from the cultivar Innovator, SMRT-AgRenSeq-d analyses reliably identified the late blight resistance benchmark genes Rpi-R1, Rpi-R2-like, Rpi-R3a, and Rpi-R3b in a panel of 117 varieties with variable phenotype penetrations. All benchmark genes were identified with an F1 score of 1, which indicates absolute linkage in the panel. This method also identified nine strong candidates for Gpa5 that controls the potato cyst nematode (PCN) species Globodera pallida (pathotypes Pa2/3). Assuming that NLRs are involved in controlling many types of resistances, SMRT-AgRenSeq-d can readily be applied to diverse crops and pathogen systems.
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Affiliation(s)
- Yuhan Wang
- Division of Plant Sciences at the Hutton, The University of Dundee, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Lynn H Brown
- Division of Plant Sciences at the Hutton, The University of Dundee, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Thomas M Adams
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Yuk Woon Cheung
- Division of Plant Sciences at the Hutton, The University of Dundee, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Jie Li
- College of Plant Protection, China Agricultural University, Haidian District, Beijing, 100083, China
| | - Vanessa Young
- James Hutton Limited, The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Drummond T Todd
- James Hutton Limited, The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Miles R Armstrong
- Division of Plant Sciences at the Hutton, The University of Dundee, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Konrad Neugebauer
- Biomathematics and Statistics Scotland, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Amanpreet Kaur
- Division of Plant Sciences at the Hutton, The University of Dundee, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
- Crop Research Centre, Teagasc, Oak Park, Carlow R93 XE12, Ireland
| | - Brian Harrower
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Stan Oome
- HZPC Research B.V. HZPC, Edisonweg 5, 8501 XG Joure, Netherlands
| | - Xiaodan Wang
- College of Plant Protection, China Agricultural University, Haidian District, Beijing, 100083, China
| | - Micha Bayer
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Ingo Hein
- Division of Plant Sciences at the Hutton, The University of Dundee, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
- College of Plant Protection, China Agricultural University, Haidian District, Beijing, 100083, China
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10
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Sood S, Bhardwaj V, Bairwa A, Dalamu, Sharma S, Sharma AK, Kumar A, Lal M, Kumar V. Genome-wide association mapping and genomic prediction for late blight and potato cyst nematode resistance in potato ( Solanum tuberosum L.). FRONTIERS IN PLANT SCIENCE 2023; 14:1211472. [PMID: 37860256 PMCID: PMC10582711 DOI: 10.3389/fpls.2023.1211472] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 09/12/2023] [Indexed: 10/21/2023]
Abstract
Potatoes are an important source of food for millions of people worldwide. Biotic stresses, notably late blight and potato cyst nematodes (PCN) pose a major threat to potato production worldwide, and knowledge of genes controlling these traits is limited. A genome-wide association mapping study was conducted to identify the genomic regulators controlling these biotic stresses, and the genomic prediction accuracy was worked out using the GBLUP model of genomic selection (GS) in a panel of 222 diverse potato accessions. The phenotype data on resistance to late blight and two PCN species (Globodera pallida and G. rostochiensis) were recorded for three and two consecutive years, respectively. The potato panel was genotyped using genotyping by sequencing (GBS), and 1,20,622 SNP markers were identified. A total of 7 SNP associations for late blight resistance, 9 and 11 for G. pallida and G. rostochiensis, respectively, were detected by additive and simplex dominance models of GWAS. The associated SNPs were distributed across the chromosomes, but most of the associations were found on chromosomes 5, 10 and 11, which have been earlier reported as the hotspots of disease-resistance genes. The GS prediction accuracy estimates were low to moderate for resistance to G. pallida (0.04-0.14) and G. rostochiensis (0.14-0.21), while late blight resistance showed a high prediction accuracy of 0.42-0.51. This study provides information on the complex genetic nature of these biotic stress traits in potatoes and putative SNP markers for resistance breeding.
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Affiliation(s)
- Salej Sood
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Vinay Bhardwaj
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Aarti Bairwa
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Dalamu
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Sanjeev Sharma
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Ashwani K. Sharma
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Ashwani Kumar
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
| | - Mehi Lal
- ICAR-Central Potato Research Institute, Regional Station, Modipuram, UP, India
| | - Vinod Kumar
- Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla, HP, India
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11
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Akai K, Asano K, Suzuki C, Shimosaka E, Tamiya S, Suzuki T, Takeuchi T, Ohki T. De novo genome assembly of the partial homozygous dihaploid potato identified PVY resistance gene ( Rychc) derived from Solanum chacoense. BREEDING SCIENCE 2023; 73:168-179. [PMID: 37404346 PMCID: PMC10316315 DOI: 10.1270/jsbbs.22078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 12/11/2022] [Indexed: 07/06/2023]
Abstract
The isolation of disease resistance genes introduced from wild or related cultivated species is essential for understanding their mechanisms, spectrum and risk of breakdown. To identify target genes not included in reference genomes, genomic sequences with the target locus must be reconstructed. However, de novo assembly approaches of the entire genome, such as those used for constructing reference genomes, are complicated in higher plants. Moreover, in the autotetraploid potato, the heterozygous regions and repetitive structures located around disease resistance gene clusters fragment the genomes into short contigs, making it challenging to identify resistance genes. In this study, we report that a de novo assembly approach of a target gene-specific homozygous dihaploid developed through haploid induction was suitable for gene isolation in potatoes using the potato virus Y resistance gene Rychc as a model. The assembled contig containing Rychc-linked markers was 3.3 Mb in length and could be joined with gene location information from the fine mapping analysis. Rychc was successfully identified in a repeated island located on the distal end of the long arm of chromosome 9 as a Toll/interleukin-1 receptor-nucleotide-binding site-leucine rich repeat (TIR-NBS-LRR) type resistance gene. This approach will be practical for other gene isolation projects in potatoes.
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Affiliation(s)
- Kotaro Akai
- Memuro Upland Farming Research Division, Hokkaido Agricultural Research Center, National Agricultural Research Organization, Memuro, Hokkaido 082-0081, Japan
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589, Japan
| | - Kenji Asano
- Memuro Upland Farming Research Division, Hokkaido Agricultural Research Center, National Agricultural Research Organization, Memuro, Hokkaido 082-0081, Japan
| | - Chika Suzuki
- Hokkaido Research Organization, Central Agricultural Experiment Station, Naganuma, Hokkaido 069-1395, Japan
| | - Etsuo Shimosaka
- Memuro Upland Farming Research Division, Hokkaido Agricultural Research Center, National Agricultural Research Organization, Memuro, Hokkaido 082-0081, Japan
| | - Seiji Tamiya
- Memuro Upland Farming Research Division, Hokkaido Agricultural Research Center, National Agricultural Research Organization, Memuro, Hokkaido 082-0081, Japan
| | - Takako Suzuki
- Hokkaido Research Organization, Central Agricultural Experiment Station, Naganuma, Hokkaido 069-1395, Japan
| | - Toru Takeuchi
- Hokkaido Research Organization, Central Agricultural Experiment Station, Naganuma, Hokkaido 069-1395, Japan
| | - Takehiro Ohki
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589, Japan
- National Agriculture and Food Research Organization, Hokkaido Agricultural Research Center, Sapporo, Hokkaido 062-8555, Japan
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12
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de Vries ME, Adams JR, Eggers EJ, Ying S, Stockem JE, Kacheyo OC, van Dijk LCM, Khera P, Bachem CW, Lindhout P, van der Vossen EAG. Converting Hybrid Potato Breeding Science into Practice. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12020230. [PMID: 36678942 PMCID: PMC9861226 DOI: 10.3390/plants12020230] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 12/21/2022] [Accepted: 12/29/2022] [Indexed: 05/27/2023]
Abstract
Research on diploid hybrid potato has made fast advances in recent years. In this review we give an overview of the most recent and relevant research outcomes. We define different components needed for a complete hybrid program: inbred line development, hybrid evaluation, cropping systems and variety registration. For each of these components the important research results are discussed and the outcomes and issues that merit further study are identified. We connect fundamental and applied research to application in a breeding program, based on the experiences at the breeding company Solynta. In the concluding remarks, we set hybrid breeding in a societal perspective, and we identify bottlenecks that need to be overcome to allow successful adoption of hybrid potato.
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Affiliation(s)
| | - James R. Adams
- Solynta, Wageningen 6703 HA, The Netherlands
- Institute of Biometris, Mathematical and Statistical Methods, Wageningen University and Research, 6700 HB Wageningen, The Netherlands
| | - Ernst-jan Eggers
- Solynta, Wageningen 6703 HA, The Netherlands
- Laboratory of Plant Breeding, Wageningen University & Research, Wageningen 6708 PB, The Netherlands
| | - Su Ying
- Solynta, Wageningen 6703 HA, The Netherlands
| | - Julia E. Stockem
- Solynta, Wageningen 6703 HA, The Netherlands
- Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen 6700 AK, The Netherlands
| | - Olivia C. Kacheyo
- Solynta, Wageningen 6703 HA, The Netherlands
- Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen 6700 AK, The Netherlands
| | - Luuk C. M. van Dijk
- Solynta, Wageningen 6703 HA, The Netherlands
- Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen 6700 AK, The Netherlands
| | - Pawan Khera
- Solynta, Wageningen 6703 HA, The Netherlands
| | - Christian W. Bachem
- Solynta, Wageningen 6703 HA, The Netherlands
- Laboratory of Plant Breeding, Wageningen University & Research, Wageningen 6708 PB, The Netherlands
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13
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Pulavarty A, Singh A, Smyth D, Mehta JP, Horgan K, Kakouli-Duarte T. Sustainable management of the potato cyst nematode, Globodera rostochiensis, with two microbial fermentation products. FRONTIERS IN PLANT SCIENCE 2022; 13:987059. [PMID: 36275579 PMCID: PMC9580274 DOI: 10.3389/fpls.2022.987059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 08/18/2022] [Indexed: 06/16/2023]
Abstract
Potato cyst nematodes (PCN) cause an overall 9% yield loss of total potato production worldwide. Research on sustainable management of PCN is still under progress. Two microbial fermentation products (MFPs) from Alltech, a proprietary blend formulated with a bacterial fermentation media and a Cu component (MFP5075), and a microbial based product (MFP3048), were evaluated against the PCN Globodera rostochiensis. In laboratory tests, effectiveness of the MFPs was recorded in terms of PCN juveniles (J2) hatching from cysts, J2 mortality and their attraction toward potato roots using pluronic gel. Greenhouse trials were conducted to study the effect of the products on PCN infestation in potato plants and a pilot scale experiment was conducted to study the impact of these MFPs on nematode biodiversity in garden soil. All treatments were performed within a concentration range of 0, 0.5, 1, and 2% (v/v) MFP5075 and 2, 6, 10, and 20 g/10 ml (w/v) MFP3048. The attraction assay, juvenile hatching and the PCN infestation in plants results were compared with those in an untreated control and a commercial nematicide (Nemguard™) treatment. After 24 h of treatment with 0.5 and 1% MFP5075, a 13-fold and 43-fold reduction, respectively, relative to J2 survival was recorded compared to that of untreated control. However, no J2 survived at 2% and above concentration of the MFP5075 treatment. Treatment with MFP3048 was effective in causing mortality of J2 only after 48-h. In the attraction assay, a 20-fold and 8-fold reduction in number of J2 attracted toward potato roots was observed, when treated with MFP5075, compared to the untreated and the Nemguard™ treatment, respectively. Subsequently, 30-35 PCN cysts were treated with both products dissolved in potato root diffusate and the results were recorded in terms of number of J2 hatched in each treatment after 10 days. No J2 hatched in the MFP5075 treatment, whereas mean numbers (±SE) of 243 ± 11.5, 30 ± 2.5, and 1.3 ± 0.6 J2 were noted in the untreated control, MFP3048, and the Nemguard™ treatment, respectively. The treatment with the MFPs compromised the integrity of the unhatched J2, which looked granular, whereas the internal organs of the unhatched J2 could be clearly identified in the untreated control. In plant infestation studies, treatment with MFP3048 and MFP5075 caused 90.6 and 84.9 percent reduction in PCN infestation, respectively, in terms of cysts developed on roots compared to untreated control. Overall, results indicate that the MFPs could potentially provide a promising alternative for sustainable PCN management.
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Affiliation(s)
- Anusha Pulavarty
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Applied Science, South East Technological University (SETU), Carlow, Ireland
| | - Ankit Singh
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Applied Science, South East Technological University (SETU), Carlow, Ireland
| | - David Smyth
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Applied Science, South East Technological University (SETU), Carlow, Ireland
| | - Jai Prakash Mehta
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Applied Science, South East Technological University (SETU), Carlow, Ireland
| | - Karina Horgan
- Alltech Bioscience Centre, Dunboyne, County Meath, Ireland
| | - Thomais Kakouli-Duarte
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Applied Science, South East Technological University (SETU), Carlow, Ireland
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14
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Zheng Q, Bertran A, Brand A, van Schaik CC, van de Ruitenbeek SJS, Smant G, Goverse A, Sterken MG. Comparative Transcriptome Analysis Reveals the Specific Activation of Defense Pathways Against Globodera pallida in Gpa2 Resistant Potato Roots. FRONTIERS IN PLANT SCIENCE 2022; 13:909593. [PMID: 35783958 PMCID: PMC9248836 DOI: 10.3389/fpls.2022.909593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/23/2022] [Indexed: 06/15/2023]
Abstract
Cyst nematodes are considered a dominant threat to yield for a wide range of major food crops. Current control strategies are mainly dependent on crop rotation and the use of resistant cultivars. Various crops exhibit single dominant resistance (R) genes that are able to activate effective host-specific resistance to certain cyst nematode species and/or populations. An example is the potato R gene Gpa2, which confers resistance against the potato cyst nematode (PCN), Globodera pallida population D383. Activation of Gpa2 results in a delayed resistance response, which is characterized by a layer of necrotic cells formed around the developing nematode feeding structure. However, knowledge about the Gpa2-induced defense pathways is still lacking. Here, we uncover the transcriptional changes and gene expression network induced upon Gpa2 activation in potato roots infected with G. pallida. To this end, in vitro-grown Gpa2-resistant potato roots were infected with the avirulent population D383 and virulent population Rookmaker. Infected root segments were harvested at 3 and 6 dpi and sent for RNA sequencing. Comparative transcriptomics revealed a total of 1,743 differentially expressed genes (DEGs) upon nematode infection, of which 559 DEGs were specifically regulated in response to D383 infection. D383-specific DEGs associated with Gpa2-mediated defense mainly relates to calcium-binding activity, salicylic acid (SA) biosynthesis, and systemic acquired resistance (SAR). These data reveal that cyst nematode resistance in potato roots depends on conserved downstream signaling pathways involved in plant immunity, which are also known to contribute to R genes-mediated resistance against other pathogens with different lifestyles.
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15
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Nguyen HT, Mantelin S, Ha CV, Lorieux M, Jones JT, Mai CD, Bellafiore S. Insights Into the Genetics of the Zhonghua 11 Resistance to Meloidogyne graminicola and Its Molecular Determinism in Rice. FRONTIERS IN PLANT SCIENCE 2022; 13:854961. [PMID: 35599898 PMCID: PMC9116194 DOI: 10.3389/fpls.2022.854961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 04/14/2022] [Indexed: 06/15/2023]
Abstract
Meloidogyne graminicola is a widely spread nematode pest of rice that reduces crop yield up to 20% on average in Asia, with devastating consequences for local and global rice production. Due to the ban on many chemical nematicides and the recent changes in water management practices in rice agriculture, an even greater impact of M. graminicola can be expected in the future, stressing the demand for the development of new sustainable nematode management solutions. Recently, a source of resistance to M. graminicola was identified in the Oryza sativa japonica rice variety Zhonghua 11 (Zh11). In the present study, we examine the genetics of the Zh11 resistance to M. graminicola and provide new insights into its cellular and molecular mechanisms. The segregation of the resistance in F2 hybrid populations indicated that two dominant genes may be contributing to the resistance. The incompatible interaction of M. graminicola in Zh11 was distinguished by a lack of swelling of the root tips normally observed in compatible interactions. At the cellular level, the incompatible interaction was characterised by a rapid accumulation of reactive oxygen species in the vicinity of the nematodes, accompanied by extensive necrosis of neighbouring cells. The expression profiles of several genes involved in plant immunity were analysed at the early stages of infection during compatible (susceptible plant) and incompatible (resistant plant) interactions. Notably, the expression of OsAtg4 and OsAtg7, significantly increased in roots of resistant plants in parallel with the cell death response, suggesting that autophagy is activated and may contribute to the resistance-mediated hypersensitive response. Similarly, transcriptional regulation of genes involved in hormonal pathways in Zh11 indicated that salicylate signalling may be important in the resistance response towards M. graminicola. Finally, the nature of the resistance to M. graminicola and the potential exploitation of the Zh11 resistance for breeding are discussed.
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Affiliation(s)
- Hue Thi Nguyen
- LMI RICE-2, Agricultural Genetics Institute (AGI), Hanoi, Vietnam
- Department of Life Sciences, University of Science and Technology of Hanoi (USTH), Hanoi, Vietnam
| | - Sophie Mantelin
- Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) UMR 1355 Institut Sophia Agrobiotech, Sophia Antipolis, France
| | - Cuong Viet Ha
- Research Center of Tropical Plant Disease, Vietnam National University of Agriculture (VNUA), Hanoi, Vietnam
| | - Mathias Lorieux
- DIADE, University of Montpellier, IRD, CIRAD, Montpellier, France
| | - John T. Jones
- The James Hutton Institute, Dundee, United Kingdom
- School of Biology, University of St Andrews, St Andrews, United Kingdom
| | - Chung Duc Mai
- LMI RICE-2, Agricultural Genetics Institute (AGI), Hanoi, Vietnam
| | - Stéphane Bellafiore
- PHIM Plant Health Institute, University of Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France
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16
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Bell CA, Magkourilou E, Urwin PE, Field KJ. Disruption of carbon for nutrient exchange between potato and arbuscular mycorrhizal fungi enhanced cyst nematode fitness and host pest tolerance. THE NEW PHYTOLOGIST 2022; 234:269-279. [PMID: 35020195 PMCID: PMC9304131 DOI: 10.1111/nph.17958] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Accepted: 12/16/2021] [Indexed: 06/14/2023]
Abstract
Plants simultaneously interact with a range of biotrophic symbionts, ranging from mutualists such as arbuscular mycorrhizal fungi (AMF), to parasites such as the potato cyst nematode (PCN). The exchange of mycorrhizal-acquired nutrients for plant-fixed carbon (C) is well studied; however, the impact of competing symbionts remains underexplored. In this study, we examined mycorrhizal nutrient and host resource allocation in potato with and without AMF and PCN using radioisotope tracing, whilst determining the consequences of such allocation. The presence of PCN disrupted C for nutrient exchange between plants and AMF, with plant C overwhelmingly obtained by the nematodes. Despite this, AMF maintained transfer of nutrients on PCN-infected potato, ultimately losing out in their C for nutrient exchange with the host. Whilst PCN exploited the greater nutrient reserves to drive population growth on AMF-potato, the fungus imparted tolerance to allow the host to bear the parasitic burden. Our findings provide important insights into the belowground dynamics of plant-AMF symbioses, where simultaneous nutritional and nonnutritional benefits conferred by AMF to hosts and their parasites are seldom considered in plant community dynamics. Our findings suggest this may be a critical oversight, particularly in the consideration of C and nutrient flows in plant and soil communities.
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Affiliation(s)
- Christopher A. Bell
- Faculty of Biological SciencesSchool of BiologyUniversity of LeedsLeedsLS2 9JTUK
| | - Emily Magkourilou
- Faculty of Biological SciencesSchool of BiologyUniversity of LeedsLeedsLS2 9JTUK
- Plants, Photosynthesis and SoilSchool of BiosciencesUniversity of SheffieldSheffieldS10 2TNUK
| | - P. E. Urwin
- Faculty of Biological SciencesSchool of BiologyUniversity of LeedsLeedsLS2 9JTUK
| | - Katie J. Field
- Plants, Photosynthesis and SoilSchool of BiosciencesUniversity of SheffieldSheffieldS10 2TNUK
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17
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Ruthes AC, Dahlin P. The Impact of Management Strategies on the Development and Status of Potato Cyst Nematode Populations in Switzerland: An Overview from 1958 to Present. PLANT DISEASE 2022; 106:1096-1104. [PMID: 34689584 DOI: 10.1094/pdis-04-21-0800-sr] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Globodera rostochiensis and G. pallida are some of the most successful and highly specialized plant parasitic nematodes and among the most regulated quarantine pests globally. In Switzerland, they have been monitored by annual surveys since their first detection in Swiss soil in 1958. The dataset created was reviewed to produce an overview of the development and actual status of potato cyst nematodes (PCNs) in Switzerland. Positive fields represent 0.2% of all the samples analyzed, and their distribution is limited to central-west and western Switzerland, suggesting that new introduction of PCNs and the spread of the initial introduced PCN populations did not occur. In this way, the integrated management used in Switzerland appears to be effective. However, the increasing availability of potato varieties with resistance to G. rostochiensis and the limited availability of varieties with resistance to G. pallida, together with other biotic and abiotic factors, have promoted changes in the dominance of either species. Consequently, an extended monitoring program is of interest to Swiss farmers, to avoid favoring virulent traits that could be present in Swiss Globodera populations.
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Affiliation(s)
- Andrea Caroline Ruthes
- Agroscope, Research Division Plant Protection, Phytopathology and Zoology in Fruit and Vegetable Production, 8820 Wädenswil, Switzerland
| | - Paul Dahlin
- Agroscope, Research Division Plant Protection, Phytopathology and Zoology in Fruit and Vegetable Production, 8820 Wädenswil, Switzerland
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Abstract
Plant-parasitic nematodes (PPNs) are important pests that cause an estimated ten billion dollars of crop loss each year in the United States and over 100 billion dollars globally. The Animal and Plant Health Inspection Service (APHIS) within the U.S. Department of Agriculture maintains and updates the U.S. Regulated Plant Pest list. Currently, the number of PPNs regulated by APHIS includes more than 60 different species. This review focuses on the top ten most economically important regulated and emerging plant-parasitic nematodes and summarizes the diagnostics of morphological and some molecular features for distinguishing them. These ten major previously described nematode species are associated with various economically important crops from around the world. This review also includes their current distribution in the U.S. and a brief historical background and updated systematic position of these species. The species included in this review include three PPNs considered by the U.S. Department of Agriculture as invasive invertebrates Globodera pallida, Globodera rostochiensis, and Heterodera glycines; four regulated PPNs, namely Bursaphelenchus xylophilus, Meloidogyne fallax, Ditylenchus dipsaci, and Pratylenchus fallax; and the three emerging PPNs Meloidogyne chitwoodi, Meloidogyne enterolobii, and Litylenchus crenatae mccannii.
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Pulavarty A, Egan A, Karpinska A, Horgan K, Kakouli-Duarte T. Plant Parasitic Nematodes: A Review on Their Behaviour, Host Interaction, Management Approaches and Their Occurrence in Two Sites in the Republic of Ireland. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112352. [PMID: 34834715 PMCID: PMC8624893 DOI: 10.3390/plants10112352] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 10/16/2021] [Accepted: 10/26/2021] [Indexed: 06/01/2023]
Abstract
Plant parasitic nematodes are a major problem for growers worldwide, causing severe crop losses. Several conventional strategies, such as chemical nematicides and biofumigation, have been employed in the past to manage their infection in plants and spread in soils. However, the search for the most sustainable and environmentally safe practices is still ongoing. This review summarises information on plant parasitic nematodes, their distribution, and their interaction with their host plants, along with various approaches to manage their infestations. It also focuses on the application of microbial and fermentation-based bionematicides that have not only been successful in controlling nematode infection but have also led to plant growth promotion and proven to be environmentally safe. Studies with new information on the relative abundance of plant parasitic nematodes in two agricultural sites in the Republic of Ireland are also reported. This review, with the information it provides, will help to generate an up-to-date knowledge base on plant parasitic nematodes and their management practices.
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Affiliation(s)
- Anusha Pulavarty
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Science and Health, Institute of Technology Carlow, Kilkenny Road, R93 V960 Carlow, Ireland; (A.P.); (A.E.); (A.K.)
| | - Aoife Egan
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Science and Health, Institute of Technology Carlow, Kilkenny Road, R93 V960 Carlow, Ireland; (A.P.); (A.E.); (A.K.)
| | - Anna Karpinska
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Science and Health, Institute of Technology Carlow, Kilkenny Road, R93 V960 Carlow, Ireland; (A.P.); (A.E.); (A.K.)
| | - Karina Horgan
- Alltech Bioscience Centre, A86 X006 Dunboyne, County Meath, Ireland;
| | - Thomais Kakouli-Duarte
- Molecular Ecology and Nematode Research Group, enviroCORE, Department of Science and Health, Institute of Technology Carlow, Kilkenny Road, R93 V960 Carlow, Ireland; (A.P.); (A.E.); (A.K.)
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20
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Biotechnological advances with applicability in potatoes for resistance against root-knot nematodes. Curr Opin Biotechnol 2021; 70:226-233. [PMID: 34217954 DOI: 10.1016/j.copbio.2021.06.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 06/06/2021] [Accepted: 06/14/2021] [Indexed: 12/15/2022]
Abstract
Potato production is negatively affected by root-knot nematodes (Meloidogyne spp.). There are no commercially available potato cultivars that are resistant to root-knot nematodes. To reduce the reliance on chemical controls, genetic engineering for nematode resistance in potato shows promise. Genetically modified potatoes that silence a parasitism gene or that express toxic protease inhibitors display reduced nematode infections. Modifying potato immune responses may also offer new opportunities for nematode resistance in potato. Plant defense elicitors, including those secreted by modified bacteria, enhanced resistance against root-knot nematodes in potato. The use of transgenic bacteria as delivery vehicles of defense-related molecules presents several possibilities for sophisticated nematode management and because this does not involve transgenic plants, it may garner greater public acceptance.
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