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Le TYL, Lee J, Shim SY, Jung J, Kim SR, Hong SH, Lee MG, Hwang SG. Effects of Liquid Bio-Fertilizer on Plant Growth, Antioxidant Activity, and Soil Bacterial Community During Cultivation of Chinese Cabbage ( Brassica rapa L. ssp. pekinensis). Microorganisms 2025; 13:1036. [PMID: 40431209 PMCID: PMC12114552 DOI: 10.3390/microorganisms13051036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2025] [Revised: 04/26/2025] [Accepted: 04/27/2025] [Indexed: 05/29/2025] Open
Abstract
This study investigated the effects of liquid bio-fertilizer (LBF) on the growth, antioxidant activity, soil properties, and soil microbial composition of Chinese cabbage (Brassica rapa L. ssp. pekinensis). The LBF application significantly enhanced vegetative growth by increasing the leaf length, leaf width, fresh weight, and dry weight. Additionally, antioxidant activity increased with rises in total phenolic and flavonoid contents. However, the per-unit antioxidant concentrations decreased, likely due to rapid biomass accumulation. Soil analysis showed improvements in pH, organic matter, and available phosphorus. Microbial analysis revealed that Acidobacteria enrichment was associated with enhanced nutrient cycling despite reduced overall microbial diversity. Transcriptomic analysis identified 445 differentially expressed genes with upregulation in the metabolism and photosynthesis-related pathways, suggesting improved nutrient assimilation and energy production. These findings demonstrate that LBF enhances plant growth and soil fertility while influencing microbial dynamics and gene expression.
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Affiliation(s)
- Tran Yen Linh Le
- Department of Agricultural Convergence, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea;
| | - Junkyung Lee
- Department of Applied Plant Science, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea; (J.L.); (S.-Y.S.)
| | - Su-Yeon Shim
- Department of Applied Plant Science, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea; (J.L.); (S.-Y.S.)
| | - Jiwon Jung
- Department of Environmental Resources, Agricultural and Rural Development, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea;
| | - Soo-Ryang Kim
- Industry-Academic Cooperation Foundation, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea; (S.-R.K.); (S.-H.H.)
| | - Sung-Ha Hong
- Industry-Academic Cooperation Foundation, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea; (S.-R.K.); (S.-H.H.)
| | - Myung-Gyu Lee
- Department of Smart Life Science, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea;
| | - Sun-Goo Hwang
- Department of Smart Life Science, Sangji University, 83 Sangjidae-gil, Wonju-si 26339, Republic of Korea;
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Sharma V, Sheershwal A, Bisht S. Rhizobacteria Revolution: Amplifying Crop Resilience and Yield in a Changing Climate Through Plant Growth Promotion. J Basic Microbiol 2025:e039. [PMID: 40302384 DOI: 10.1002/jobm.70039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 03/31/2025] [Accepted: 04/06/2025] [Indexed: 05/02/2025]
Abstract
The rapid progression of climate change poses significant challenges to global agriculture, necessitating innovative solutions to ensure food security for an expanding population. Plant growth-promoting rhizobacteria (PGPR) offer a promising avenue for sustainable agriculture by enhancing crop resilience and productivity under environmental constraints. These beneficial microbes regulate key physiological processes in plants, such as phytohormone synthesis and nutrient solubilization. This enhances root architecture, improves soil fertility, and enables crops to adapt to resource-limited conditions. Moreover, PGPR strengthen plant defenses against abiotic stressors such as salinity, drought, and nutrient deficiencies, as well as biotic threats like pathogens. Empirical evidence demonstrates that PGPR inoculation can significantly enhance crop yields across diverse agroecosystems by increasing nutrient use efficiency and stress tolerance. Despite their proven potential, the effective deployment of PGPR in farming systems requires addressing critical issues related to scalability, formulation, and integration with existing practices. This review underscores the role of PGPR in mitigating climate-induced agricultural challenges, highlighting the need for interdisciplinary collaborations and robust knowledge-sharing networks to drive the adoption of PGPR-based interventions. By leveraging these microbial allies, we can pave the way for climate-resilient farming systems and safeguard global food security amidst an uncertain future.
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Affiliation(s)
- Vani Sharma
- Faculty of Science, Motherhood University, Roorkee, India
| | | | - Shiwali Bisht
- Faculty of Science, Motherhood University, Roorkee, India
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Wang T, Wang K, Wang N, Cui D, Li S, Lu Q, Zuo Y. From intercropping to monocropping: The effects of Pseudomonas strain to facilitate nutrient efficiency in peanut and soil. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 219:109378. [PMID: 39647229 DOI: 10.1016/j.plaphy.2024.109378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2024] [Revised: 11/27/2024] [Accepted: 12/02/2024] [Indexed: 12/10/2024]
Abstract
As an oilseed crop, the yield and quality of peanuts are severely constrained by nutrient deficiencies, particularly in calcareous soils in northern China. Maize-peanut intercropping is an effective strategy to enhance mineral nutrient efficiency in peanuts via plant-microbe interaction, but the underlying mechanisms remain elusive. Here, we conducted experiments using a Pseudomonas strain (Pse.IP6) with diverse beneficial characteristics, which was isolated from the rhizosphere of intercropped peanuts. Additionally, Pse.IP6 exhibits high phylogenetic similarity with the Amplicon Sequence Variants 48 (ASV48) which belongs to Pseudomonas and is positively correlated with Fe in plants and soil in intercropping. To confirm the plant growth-promoting potential of Pse.IP6 and its role in intercropping advantage, we constructed pot experiments. Results revealed that Pse.IP6 promoted shoot growth and root development, as well significantly enhanced SPAD value, net photosynthetic rate, stomatal conductance, and transpiration rate of peanut leaves. Moreover, the application of Pse.IP6 resulted in a notable accumulation of nitrogen (N), phosphorus (P), and potassium (K) in shoot and active iron (Fe) in leaves, accompanied by an increased K-N ratio. The primary reason for the nutrient promotion is the enhancement of the bioavailability of nitrate, ammonium, P, K, and Fe in the rhizosphere. Collectively, our findings demonstrate that Pse.IP6, enriched in intercropping peanut, is a plant growth-promoting bacteria, represented by transferring the intercropping advantage on nutrients activation to monocropping peanuts. Our results offer insights into plant-rhizobacteria interaction mechanisms and therefore provide a rhizobacteria-based pathway to improve nutrient efficiency and productivity of crops.
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Affiliation(s)
- Tianqi Wang
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China; Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Natural Resources and Environment, South China Agricultural University, 510642, Guangzhou, China
| | - Kunguang Wang
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China
| | - Nanqi Wang
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China
| | - Dongming Cui
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China
| | - Shiqin Li
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China
| | - Qiaofang Lu
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China
| | - Yuanmei Zuo
- College of Resources and Environmental Sciences, State Key Laboratory of Nutrient Use and Management (SKL-NUM), National Academy of Agriculture Green Development, China Agricultural University, 100193, Beijing, China.
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Wu X, Liu Y, Jia B, Tao L, Li H, Wang J, Yuan Z, Sun X, Yao Y. Four Decades of Bacillus Biofertilizers: Advances and Future Prospects in Agriculture. Microorganisms 2025; 13:187. [PMID: 39858955 PMCID: PMC11767708 DOI: 10.3390/microorganisms13010187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Revised: 01/13/2025] [Accepted: 01/15/2025] [Indexed: 01/27/2025] Open
Abstract
Over the past four decades, Bacillus biofertilizers, which are microbial formulations based on Bacillus species, have significantly contributed to sustainable agriculture by enhancing crop growth, improving soil health, and reducing the dependency on chemical fertilizers. Bacillus species, particularly known for their ability to promote plant growth, fix nitrogen, solubilize phosphorus, and produce growth-promoting substances such as phytohormones and antibiotics, have emerged as key players in the development of eco-friendly agricultural solutions. This research utilizes bibliometric analysis based on 3,242 documents sourced from the Web of Science database to map the development, key contributions, and innovation within the field from 1985 to 2023. This study identifies exponential growth in research output, particularly from 2003 onwards, indicating a robust interest and expanding research base predominantly in China, India, and the United States. We segmented the research timeline into three distinct phases, each marked by varying growth rates and research foci. This paper presents novel insights into the geographical and institutional distributions of research, highlighting the predominant role of developing countries in advancing Bacillus-based technologies. Key research hotspots have evolved from basic applications to complex interactions involving synthetic microbial communities and advanced multi-omics techniques. Our findings demonstrate a trend towards more strategic and technologically integrated approaches to developing Bacillus biofertilizers, reflecting broader shifts towards more sustainable agricultural systems. This study not only charts historical progress, but also proposes future research trajectories aimed at enhancing the application and effectiveness of microbial fertilizers across diverse ecosystems.
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Affiliation(s)
- Xinmai Wu
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
| | - Yan Liu
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Jiangsu Provincial Key Laboratory of Coastal Saline Soil Resources Utilization and Ecological Conservation, Nanjing Agricultural University, Nanjing 210095, China;
| | - Baolei Jia
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
| | - Lili Tao
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Jiangsu Provincial Key Laboratory of Coastal Saline Soil Resources Utilization and Ecological Conservation, Nanjing Agricultural University, Nanjing 210095, China;
| | - Han Li
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
| | - Jingbang Wang
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
| | - Ziqi Yuan
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
| | - Xiaobao Sun
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
| | - Yanlai Yao
- Xianghu Laboratory, Hangzhou 311231, China; (X.W.); (B.J.); (H.L.); (J.W.); (Z.Y.); (X.S.)
- Institute of Environment, Resource, Soil and Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
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Feng LY, Zhao JY, Shi ZF, Li MG, Pu T, Shi ZL, Liu X, Wang Y, Li LL, Yang PW. Intrasporangium zincisolvens sp. nov., A Novel Actinobacterium Isolated from Rhizosphere Soil. Curr Microbiol 2025; 82:87. [PMID: 39820551 DOI: 10.1007/s00284-025-04073-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 01/04/2025] [Indexed: 01/19/2025]
Abstract
A novel phosphate-solubilizing and zinc-solubilizing actinobacterium strain YIM S08009T was isolated from rhizosphere soil collected from Pinus yunnanensis in Wuliangshan National Nature Reserve, Pu'er City, Yunnan Province, southwest PR China. Cells of strain YIM S08009T were Gram-stain-positive, non-motile, irregular rods to cocci, and formed yellow and white colonies on nutrient agar. Growth was observed at 10-40 °C (optimum 25-35 °C), pH 6.0-8.5 (optimum 7), and 0-4% (w/v) NaCl (optimum 1%). The cell wall peptidoglycan contained LL-diaminopimelic acid. The whole-cell sugars were mannose, ribose, glucose, and galactose. The predominant menaquinone was MK-8(H4). Major polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, unknown lipid, and 3 unknown phospholipids. The predominant fatty acids were iso-C14:0, iso-C15:0, and iso-C16:0. The DNA G + C content was 72.6%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM S08009T belonged to genus Intrasporangium, and was most closely related to Intrasporangium flavum MUSC 78T, with 99.0% 16S rRNA gene sequence similarity. Strain YIM S08009T shared 90.1% orthologous average nucleotide identity (OrthoANI) and 39.8% digital DNA-DNA hybridization (dDDH) with I. flavum MUSC 78T. The genome of strain YIM S08009T contained phosphate-solubilizing genes (SenX3, RegX3, pstSCAB, ugpBAEC, phoA) and zinc-solubilizing genes (znuABC, zupT), and the strain had also demonstrated in vitro phosphorus and zinc solubilization. Based on the genotypic and phenotypic analyses, strain YIM S08009T (= CGMCC 1.60168T = NBRC 116604T = KCTC 59021T) represents a novel Intrasporangium species, for which the name Intrasporangium zincisolvens sp. nov. is proposed.
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Affiliation(s)
- Lu-Yao Feng
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China
- Yunnan University, Kunming, 650500, People's Republic of China
| | - Jiang-Yuan Zhao
- Yunnan University, Kunming, 650500, People's Republic of China
| | - Zhu-Feng Shi
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China
| | - Ming-Gang Li
- Yunnan University, Kunming, 650500, People's Republic of China
| | - Te Pu
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China
| | - Zhu-Li Shi
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China
- Yunnan University, Kunming, 650500, People's Republic of China
| | - Xin Liu
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China
- Yunnan University, Kunming, 650500, People's Republic of China
| | - Yu Wang
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China
- Yunnan University, Kunming, 650500, People's Republic of China
| | - Le-Le Li
- Department of Medicine, Qujing Vocational and Technical College, Qujing, 655000, People's Republic of China.
| | - Pei-Wen Yang
- Institute of Agricultural Environmental Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650205, People's Republic of China.
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Sai A, Ben Younes S, Ellafi A, Moula A, Sánchez-Yañez JM, Borgi MA. Exploration and impact of Metlaoui-Gafsa phosphate rock amendment: the role of Serratia plymuthica BMA1 in phosphate solubilization, heavy metal rhizoaccumulation, and enhanced nutrition in Vicia faba L. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:67007-67023. [PMID: 39656333 DOI: 10.1007/s11356-024-35604-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 11/16/2024] [Indexed: 12/25/2024]
Abstract
The geochemical analysis of Gafsa rock phosphate (GRP) revealed relatively high concentrations of essential plant minerals and trace heavy metals (HMs). Environmental contamination factors indicated moderate to very strong HM contamination due to GRP soil amendment. The potential use of the Serratia plymuthica BMA1 strain, which is known for its ability to solubilize GRP, to enhance mineral nutrition in Vicia faba L. and its role in HM rhizoaccumulation from GRP were explored. Pot experiments revealed that bacterization with S. plymuthica BMA1 in V. faba grown in sand supplemented with GRP as the sole source of phosphorus significantly increased the potassium concentration by 64% in roots and 40% in shoots, iron by 20% in roots and 10% in shoots, and manganese by 27% in roots and 20% in shoots compared to that in V. faba not inoculated with S. plymuthica BMA1. The total dry biomass of V. faba increased by approximately 85%, while the accumulation of cadmium (Cd), copper (Cu), zinc (Zn), and lead (Pb) in the roots increased by 114%, 30%, 37%, and 44%, respectively. However, in the shoots, they increased by 35%, 10%, 85%, and 25%, respectively, for Cd, Cu, Zn, and Pb compared to those in the non-inoculated V. faba. The evaluation of the HM translocation factor, bioaccumulation factor, and bioconcentration factor with GRP highlighted the key role of S. plymuthica BMA1 in preventing the mobility of toxic HMs from reaching the aerial parts of plants. These findings suggest that S. plymuthica BMA1 has the potential to enhance mineral nutrition in V. faba and facilitate the rhizoaccumulation of toxic HMs, which has implications for plant cultivation and human consumption.
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Affiliation(s)
- Afef Sai
- Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
- Laboratory of Biotechnology and Biomonitoring of the Environment and Oasis Ecosystems (LBBEOE), Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
| | - Sonia Ben Younes
- Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia.
- Laboratory of Population Health, Faculty of Medicine of Tunis, Environmental Aggressors and Alternative Therapies (LR24ES10), Tunis, Tunisia.
| | - Ali Ellafi
- Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
- Laboratory of Analysis, Faculty of Pharmacy of Monastir, Treatment and Validation of Environmental Pollutants and Products, Monastir, Tunisia
| | - Amel Moula
- Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
- Laboratory of Biotechnology and Biomonitoring of the Environment and Oasis Ecosystems (LBBEOE), Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
| | - Juan Manuel Sánchez-Yañez
- Environmental Microbiology Laboratory, Research Institute in Chemistry and Biology, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacán, México
| | - Mohamed Ali Borgi
- Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
- Laboratory of Biotechnology and Biomonitoring of the Environment and Oasis Ecosystems (LBBEOE), Faculty of Sciences of Gafsa, University Campus of Ahmed Zarroug, University of Gafsa, 2112, Gafsa, Tunisia
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Hernández-Amador E, Montesdeoca-Flores DT, Abreu-Acosta N, Luis-Jorge JC. Effects of Rhizobacteria Strains on Plant Growth Promotion in Tomatoes ( Solanum lycopersicum). PLANTS (BASEL, SWITZERLAND) 2024; 13:3280. [PMID: 39683073 DOI: 10.3390/plants13233280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Revised: 11/13/2024] [Accepted: 11/18/2024] [Indexed: 12/18/2024]
Abstract
Numerous factors, such as soil fertility, climatic conditions, human activity, pests, and diseases, limit agricultural yields. Pesticides and fertilizers have become indispensable tools to satisfy the global food demand. However, its adverse environmental effects have led to the search for more sustainable and ethical techniques. Biofertilizers and biopesticides based on plant- growth-promoting rhizobacteria (PGPRs) are efficient and ecological treatments that promote plant growth and protection against pathogens and abiotic stresses. In this study, twelve rhizobacterial strains with plant-growth-promoting attributes were selected to evaluate their plant-growth-promoting effect on tomato plants (Solanum lycopersicum L. var Robin). Soil inoculation with these strains resulted in a significant increase in shoot length, up to 50% when compared with control plants. Regarding fresh biomass, rhizobacterial treatments significantly improved seedlings' fresh aerial weight with a maximum increase of 77%. Root biomass also demonstrated a substantial improvement, yielding 62.26% greater fresh root weight compared to the control. Finally, dry root weights exhibited the most remarkable enhancements, with values between 49 and 124%, when compared to the control plants. Concerning the nutritional status, the strains inoculation increased the macronutrients and micronutrients content in the aerial and root parts of the plants. All these findings suggest that rhizobacteria from different ecosystems and agriculture soils of the Canary Islands could be used as fertilizer inoculants to increase crop yield and promote more sustainable practices in modern agriculture.
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Affiliation(s)
- Eduardo Hernández-Amador
- Department of Botany, Ecology and Plant Physiology, Area of Plant Physiology, Science Faculty, University of La Laguna, Avenida Astrofísico Francisco Sánchez s/n, 38200 San Cristóbal de La Laguna, Tenerife, Spain
- Nertalab S.L., C. José Rodríguez Moure 4, 38008 Santa Cruz de Tenerife, Tenerife, Spain
| | - David Tomás Montesdeoca-Flores
- Department of Botany, Ecology and Plant Physiology, Area of Plant Physiology, Science Faculty, University of La Laguna, Avenida Astrofísico Francisco Sánchez s/n, 38200 San Cristóbal de La Laguna, Tenerife, Spain
- Nertalab S.L., C. José Rodríguez Moure 4, 38008 Santa Cruz de Tenerife, Tenerife, Spain
| | - Néstor Abreu-Acosta
- Nertalab S.L., C. José Rodríguez Moure 4, 38008 Santa Cruz de Tenerife, Tenerife, Spain
| | - Juan Cristo Luis-Jorge
- Department of Botany, Ecology and Plant Physiology, Area of Plant Physiology, Science Faculty, University of La Laguna, Avenida Astrofísico Francisco Sánchez s/n, 38200 San Cristóbal de La Laguna, Tenerife, Spain
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Borisova G, Maleva M, Tripti, Voropaeva O, Chukina N, Tugbaeva A, Kumar A. Amalgamation of Metal Tolerant PGPR Buttiauxella sp. EA20 with Birch Wood Biochar Enhanced Growth and Biofortification of Rapeseed under Copper Action. Front Biosci (Elite Ed) 2024; 16:34. [PMID: 39736007 DOI: 10.31083/j.fbe1604034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 06/18/2024] [Accepted: 07/23/2024] [Indexed: 12/31/2024]
Abstract
BACKGROUND Amalgamation of metal-tolerant plant growth promoting rhizobacteria (PGPR) with biochar is a promising direction for the development of chemical-free biofertilizers that can mitigate environmental risks, enhance crop productivity and their biological value. The main objective of the work includes the evaluation of the influence of prepared bacterial biofertilizer (BF) on biometric growth parameters as well as physiological and biochemical characteristics of rapeseed (Brassica napus L.) at copper action. METHODS The prepared BF was based on novel metal tolerant strain of PGPR Buttiauxella sp. EA20 isolated from the rhizosphere of orchid Epipactis atrorubens and birch wood biochar (BC). The pot-scale experiments included six treatments: peat-containing control substrate (CS); CS + 200Cu (200 mg Cu/kg of soil); CS + 5% BC (v/v); CS + 5% BC + 200Cu; CS + 5% BF (v/v); CS + 5% BF + 200Cu. RESULTS Single Cu treatment caused the decrease in rapeseed leaf area, shoot and root length, fresh and dry biomass, as well as an increase in water saturation deficit, possibly due to damage of cell membranes by lipid peroxidation. Addition of BF or BC alone mitigated these harmful effects of copper. Application of BF, regardless of Cu addition, increased the rapeseed leaf area (1.6 times on average), plant fresh and dry biomass (2.5 times on average), and photosynthetic pigment content (1.8 times on average). In addition, BF treatment along with Cu enhanced the antioxidant activity of B. napus due to the accumulation of non-enzymatic antioxidants such as carotenoids, free proline and soluble phenolic compounds, including flavonoids. Moreover, plant enrichment with copper and essential macronutrients such as nitrogen, phosphorus and potassium was observed. CONCLUSIONS The study concludes that application of complex biofertilizer based on metal tolerant PGPR strain Buttiauxella sp. EA20 and birch wood biochar mitigated the harmful effects of copper, enhanced the rapeseed growth and increased its biological value. Future perspective includes evaluation of the potential for using the resulting biofertilizer to improve the growth and biofortification of other crop species.
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Affiliation(s)
- Galina Borisova
- Department of Experimental Biology and Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University Named after the First President of Russia B.N. Yeltsin, 620002 Ekaterinburg, Russia
| | - Maria Maleva
- Department of Experimental Biology and Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University Named after the First President of Russia B.N. Yeltsin, 620002 Ekaterinburg, Russia
| | - Tripti
- Laboratory of Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University Named after the First President of Russia B.N. Yeltsin, 620002 Ekaterinburg, Russia
| | - Olga Voropaeva
- Department of Experimental Biology and Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University Named after the First President of Russia B.N. Yeltsin, 620002 Ekaterinburg, Russia
| | - Nadezhda Chukina
- Department of Experimental Biology and Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University Named after the First President of Russia B.N. Yeltsin, 620002 Ekaterinburg, Russia
| | - Anastasia Tugbaeva
- Department of Experimental Biology and Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University Named after the First President of Russia B.N. Yeltsin, 620002 Ekaterinburg, Russia
| | - Adarsh Kumar
- Department of Life Sciences, GITAM School of Science, Gandhi Institute of Technology and Management, 530045 Visakhapatnam, Andhra Pradesh, India
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Santos F, Melkani S, Oliveira-Paiva C, Bini D, Pavuluri K, Gatiboni L, Mahmud A, Torres M, McLamore E, Bhadha JH. Biofertilizer use in the United States: definition, regulation, and prospects. Appl Microbiol Biotechnol 2024; 108:511. [PMID: 39531072 PMCID: PMC11557716 DOI: 10.1007/s00253-024-13347-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 10/23/2024] [Accepted: 10/27/2024] [Indexed: 11/16/2024]
Abstract
The increasing demand for sustainable food production has driven a surge in the use and commercialization of biological inputs, including biofertilizers. In this context, biofertilizers offer potential benefits for nutrient use efficiency, crop yield and sustainability. However, inconsistent definition of the term "biofertilizer" and regulations, particularly in the USA, hinder market growth and consumer confidence. While the European Union, and countries like Brazil, India, and China have made progress in this area, the USA market, projected to exceed $1 billion by 2029, lacks clear guidelines for biofertilizer production and sale. The USA market is dominated by Rhizobium genus, Mycorrhizae fungi, and Azospirillum species and based products targeting various crops. Although there is a growing and promising market for the use of biofertilizers, there are still many challenges to overcome, and to fully realize the potential of biofertilizers, future research should focus on modes of action, specific claims, and robust regulations that must be established. KEY POINTS: • The term "biofertilizer" lacks a universally accepted definition • It is necessary establishing a national regulation for biofertilizers in the USA • The biofertilizer market is growing fast and the biggest one is in America.
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Affiliation(s)
- Flavia Santos
- Soil, Water & Ecosystem Sciences Department, University of Florida, Belle Glade, FL, USA
- Embrapa Maize and Sorghum, Sete Lagoas, Minas Gerais, Brazil
| | - Suraj Melkani
- Soil, Water & Ecosystem Sciences Department, University of Florida, Belle Glade, FL, USA
| | | | - Daniel Bini
- Embrapa Maize and Sorghum, Sete Lagoas, Minas Gerais, Brazil
| | - Kiran Pavuluri
- International Fertilizer Development Center, Muscle Shoals, AL, USA
| | - Luke Gatiboni
- North Carolina State Extension, North Carolina State University, Raleigh, NC, USA
| | - Anik Mahmud
- Soil, Water & Ecosystem Sciences Department, University of Florida, Belle Glade, FL, USA
| | - Maria Torres
- Plant and Environmental Sciences, Clemson University, Clemson, SC, USA
| | - Eric McLamore
- Agricultural Sciences, Clemson University, Clemson, SC, USA
- Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC, USA
| | - Jehangir H Bhadha
- Soil, Water & Ecosystem Sciences Department, University of Florida, Belle Glade, FL, USA.
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10
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Li P, Tian Y, Yang K, Tian M, Zhu Y, Chen X, Hu R, Qin T, Liu Y, Peng S, Yi Z, Liu Z, Ao H, Li J. Mechanism of microbial action of the inoculated nitrogen-fixing bacterium for growth promotion and yield enhancement in rice (Oryza sativa L.). ADVANCED BIOTECHNOLOGY 2024; 2:32. [PMID: 39883349 PMCID: PMC11709144 DOI: 10.1007/s44307-024-00038-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 08/31/2024] [Accepted: 09/02/2024] [Indexed: 01/31/2025]
Abstract
The use of nitrogen-fixing bacteria in agriculture is increasingly recognized as a sustainable method to boost crop yields, reduce chemical fertilizer use, and improve soil health. However, the microbial mechanisms by which inoculation with nitrogen-fixing bacteria enhance rice production remain unclear. In this study, rice seedlings were inoculated with the nitrogen-fixing bacterium R3 (Herbaspirillum) at the rhizosphere during the seedling stage in a pot experiment using paddy soil. We investigated the effects of such inoculation on nutrient content in the rhizosphere soil, plant growth, and the nitrogen-fixing microbial communities within the rhizosphere and endorhizosphere. The findings showed that inoculation with the R3 strain considerably increased the amounts of nitrate nitrogen, ammonium nitrogen, and available phosphorus in the rhizosphere by 14.77%, 27.83%, and 22.67%, respectively, in comparison to the control (CK). Additionally, the theoretical yield of rice was enhanced by 8.81% due to this inoculation, primarily through a 10.24% increase in the effective number of rice panicles and a 4.14% increase in the seed setting rate. Further analysis revealed that the structure of the native nitrogen-fixing microbial communities within the rhizosphere and endorhizosphere were altered by inoculation with the R3 strain, significantly increasing the α-diversity of the communities. The relative abundance of key nitrogen-fixing genera such as Ralstonia, Azotobacter, Geobacter, Streptomyces, and Pseudomonas were increased, enhancing the quantity and community stability of the nitrogen-fixing community. Consequently, the nitrogen-fixing capacity and sustained activity of the microbial community in the rhizosphere soil were strengthened. Additionally, the expression levels of the nitrogen absorption and transport-related genes OsNRT1 and OsPTR9 in rice roots were upregulated by inoculation with the R3 strain, potentially contributing to the increased rice yield. Our study has revealed the potential microbial mechanisms through which inoculation with nitrogen-fixing bacteria enhances rice yield. This finding provides a scientific basis for subsequent agricultural practices and is of critical importance for increasing rice production and enhancing the ecosystem services of rice fields.
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Affiliation(s)
- Peng Li
- Hunan Soil and Fertilizer Institute, Hunan Academy of Agricultural Sciences, Changsha, 410125, China
| | - Yunhe Tian
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Kun Yang
- Hunan Tobacco Science Institute, Changsha, 410004, China
| | - Meijie Tian
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Yi Zhu
- Hunan Tobacco Company Changde Branch, Changde, 415000, China
| | - Xinyu Chen
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Ruiwen Hu
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Tian Qin
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Yongjun Liu
- Hunan Tobacco Science Institute, Changsha, 410004, China
| | - Shuguang Peng
- Hunan Tobacco Science Institute, Changsha, 410004, China
| | - Zhenxie Yi
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Zhixuan Liu
- Hunan Rice Research Institute, Hunan Academy of Agricultural Sciences, Changsha, 410125, China.
| | - Hejun Ao
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China.
| | - Juan Li
- College of Agronomy, Hunan Agricultural University, Changsha, 410128, China.
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11
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Sharma P, Pandey R, Chauhan NS. Unveiling wheat growth promotion potential of phosphate solubilizing Pantoea agglomerans PS1 and PS2 through genomic, physiological, and metagenomic characterizations. Front Microbiol 2024; 15:1467082. [PMID: 39318437 PMCID: PMC11420927 DOI: 10.3389/fmicb.2024.1467082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 08/19/2024] [Indexed: 09/26/2024] Open
Abstract
Introduction Phosphorus is an abundant element in the earth's crust and is generally found as complex insoluble conjugates. Plants cannot assimilate insoluble phosphorus and require external supplementation as chemical fertilizers to achieve a good yield. Continuous use of fertilizers has impacted soil ecology, and a sustainable solution is needed to meet plant elemental requirements. Phosphate solubilizing microbes could enhance phosphorus bioavailability for better crop production and can be employed to attain sustainable agriculture practices. Methods The current study unveils the biofertilizer potential of wheat rhizospheric bacteria through physiological, taxonomic, genomic, and microbiomics experimentations. Results and Discussion Culture-dependent exploration identified phosphate-solubilizing PS1 and PS2 strains from the wheat rhizosphere. These isolates were rod-shaped, gram-negative, facultative anaerobic bacteria, having optimum growth at 37°C and pH 7. Phylogenetic and phylogenomic characterization revealed their taxonomic affiliation as Pantoea agglomerans subspecies PS1 & PS2. Both isolates exhibited good tolerance against saline (>10% NaCl (w/v), >11.0% KCl (w/v), and >6.0% LiCl (w/v)), oxidizing (>5.9% H2O2 (v/v)) conditions. PS1 and PS2 genomes harbor gene clusters for biofertilization features, root colonization, and stress tolerance. PS1 and PS2 showed nitrate reduction, phosphate solubilization, auxin production, and carbohydrate utilization properties. Treatment of seeds with PS1 and PS2 significantly enhanced seed germination percentage (p = 0.028 and p = 0.008, respectively), number of tillers (p = 0.0018), number of leaves (p = 0.0001), number of spikes (p = 0.0001) and grain production (p = 0.0001). Wheat rhizosphere microbiota characterizations indicated stable colonization of PS1 and PS2 strains in treated seeds at different feek stages. Pretreatment of seeds with both strains engineered the wheat rhizosphere microbiota by recruiting plant growth-promoting microbial groups. In vitro, In vivo, and microbiota characterization studies indicated the biofertilizer potential of Pantoea sp. PS1 & PS2 to enhance wheat crop production. The employment of these strains could fulfill plant nutrient requirements and be a substitute for chemical fertilizers for sustainable agriculture.
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Affiliation(s)
- Pinki Sharma
- Department of Biochemistry, Maharshi Dayanand University, Rohtak, India
| | - Rajesh Pandey
- INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Nar Singh Chauhan
- Department of Biochemistry, Maharshi Dayanand University, Rohtak, India
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Satoh K, Takeda K, Nagafune I, Chik WDW, Ohkama-Otsu N, Okazaki S, Yokoyama T, Hase Y. Isolation and Characterization of High-Temperature-Tolerant Mutants of Bradyrhizobium diazoefficiens USDA110 by Carbon-Ion Beam Irradiation. Microorganisms 2024; 12:1819. [PMID: 39338493 PMCID: PMC11434629 DOI: 10.3390/microorganisms12091819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 08/29/2024] [Accepted: 08/31/2024] [Indexed: 09/30/2024] Open
Abstract
Biofertilizers are promising technologies for achieving sustainable agriculture. However, high-temperature tolerance is a constraint that limits the function of microbial inoculants. To characterize the genetic changes responsible for the high-temperature tolerance of rhizobia, mutant screening was performed using Bradyrhizobium diazoefficiens USDA110. The wild-type cells were mutagenized with carbon-ion irradiation, and two mutant strains, designated M10 and M14, were obtained after a three-day heat-shock treatment at 43 °C. In particular, M14 showed superior growth at 36 °C, at which temperature growth of the wild type was extremely slow, whereas M14 grew more slowly than the wild type at 32 °C. Whole-genome sequencing revealed that M10 had seven point mutations, whereas M14 had eight point mutations together with a 1.27 Mb inversion. RNA sequencing showed that the number of differentially expressed genes greatly exceeded the actual number of induced mutations. In M14, a gene cluster associated with pyruvate metabolism was markedly downregulated, probably because of disjunction with the promoter region after inversion, and was considered to be the cause of the slow growth rate of M14 at 32 °C. Notably, transmembrane proteins, including porins, were enriched among the genes upregulated in both M10 and M14. M14 was confirmed to retain symbiotic functions with soybeans. These results indicate that high-temperature tolerance was conferred by random mutagenesis while the symbiotic functions of rhizobia was maintained.
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Affiliation(s)
- Katsuya Satoh
- Takasaki Institute for Advanced Quantum Science, National Institutes for Quantum Science and Technology (QST), 1233 Watanuki-machi, Takasaki 370-1292, Gunma, Japan; (K.S.); (I.N.); (W.D.W.C.)
| | - Kiyoko Takeda
- Institute of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu 183-8509, Tokyo, Japan; (K.T.); (N.O.-O.); (S.O.); (T.Y.)
| | - Ikuko Nagafune
- Takasaki Institute for Advanced Quantum Science, National Institutes for Quantum Science and Technology (QST), 1233 Watanuki-machi, Takasaki 370-1292, Gunma, Japan; (K.S.); (I.N.); (W.D.W.C.)
| | - Wan Dalila Wan Chik
- Takasaki Institute for Advanced Quantum Science, National Institutes for Quantum Science and Technology (QST), 1233 Watanuki-machi, Takasaki 370-1292, Gunma, Japan; (K.S.); (I.N.); (W.D.W.C.)
- Agrotechnology & Bioscience, Malaysian Nuclear Agency, Kajang 43000, Selangor, Malaysia
| | - Naoko Ohkama-Otsu
- Institute of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu 183-8509, Tokyo, Japan; (K.T.); (N.O.-O.); (S.O.); (T.Y.)
| | - Shin Okazaki
- Institute of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu 183-8509, Tokyo, Japan; (K.T.); (N.O.-O.); (S.O.); (T.Y.)
| | - Tadashi Yokoyama
- Institute of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu 183-8509, Tokyo, Japan; (K.T.); (N.O.-O.); (S.O.); (T.Y.)
| | - Yoshihiro Hase
- Takasaki Institute for Advanced Quantum Science, National Institutes for Quantum Science and Technology (QST), 1233 Watanuki-machi, Takasaki 370-1292, Gunma, Japan; (K.S.); (I.N.); (W.D.W.C.)
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13
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Barros-Rodríguez A, Pacheco P, Peñas-Corte M, Fernández-González AJ, Cobo-Díaz JF, Enrique-Cruz Y, Manzanera M. Comparative Study of Bacillus-Based Plant Biofertilizers: A Proposed Index. BIOLOGY 2024; 13:668. [PMID: 39336095 PMCID: PMC11428984 DOI: 10.3390/biology13090668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 08/20/2024] [Accepted: 08/21/2024] [Indexed: 09/30/2024]
Abstract
The market for bacteria as agricultural biofertilizers is growing rapidly, offering plant-growth stimulants; biofungicides; and, more recently, protectors against extreme environmental factors, such as drought. This abundance makes it challenging for the end user to decide on the product to use. In this work, we describe the isolation of a strain of Bacillus velezensis (belonging to the operational group Bacillus amyloliquefaciens) for use as a plant-growth-promoting rhizobacterium, a biofungicide, and a protector against drought. To compare its effectiveness with other commercial strains of the same operational group, Bacillus amyloliquefaciens, we analyzed its ability to promote the growth of pepper plants and protect them against drought, as well as its fungicidal activity through antibiosis and antagonism tests, its ability to solubilize potassium and phosphates, and its ability to produce siderophores. Finally, we used a probit function, a type of regression analysis used to model the outcomes of analyses, to quantify the biostimulatory effectiveness of the different plant-growth-promoting rhizobacteria, developing what we have called the Agricultural Protection Against Stress Index, which allowed us to numerically compare the four commercial strains of the operational group Bacillus amyloliquefaciens, based on a Delphi method-a type of regression analysis that can be used to model a cumulative normal distribution-and integrate the results from our panel of tests into a single value.
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Affiliation(s)
- Adoración Barros-Rodríguez
- Institute for Water Research and Department of Microbiology, University of Granada, 18071 Granada, Spain
- VitaNtech Biotechnology S.L, Av. de la Innovación, 1, 18016 Granada, Spain
| | - Pamela Pacheco
- Institute for Water Research and Department of Microbiology, University of Granada, 18071 Granada, Spain
| | - María Peñas-Corte
- Biopharma Research S.A (ECONATUR Group), P. Industrial Autovía Norte, C/ Montecillo S/N, 14100 La Carlota, Spain
| | - Antonio J Fernández-González
- Estación Experimental del Zaidín, Department of Soil and Plant Microbiology, Consejo Superior de Investigaciones Científicas, 18008 Granada, Spain
| | - José F Cobo-Díaz
- Department of Food Hygiene and Technology, Universidad de León, 24071 León, Spain
| | | | - Maximino Manzanera
- Institute for Water Research and Department of Microbiology, University of Granada, 18071 Granada, Spain
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14
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Alzate Zuluaga MY, Fattorini R, Cesco S, Pii Y. Plant-microbe interactions in the rhizosphere for smarter and more sustainable crop fertilization: the case of PGPR-based biofertilizers. Front Microbiol 2024; 15:1440978. [PMID: 39176279 PMCID: PMC11338843 DOI: 10.3389/fmicb.2024.1440978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 07/29/2024] [Indexed: 08/24/2024] Open
Abstract
Biofertilizers based on plant growth promoting rhizobacteria (PGPR) are nowadays gaining increasingly attention as a modern tool for a more sustainable agriculture due to their ability in ameliorating root nutrient acquisition. For many years, most research was focused on the screening and characterization of PGPR functioning as nitrogen (N) or phosphorus (P) biofertilizers. However, with the increasing demand for food using far fewer chemical inputs, new investigations have been carried out to explore the potential use of such bacteria also as potassium (K), sulfur (S), zinc (Zn), or iron (Fe) biofertilizers. In this review, we update the use of PGPR as biofertilizers for a smarter and more sustainable crop production and deliberate the prospects of using microbiome engineering-based methods as potential tools to shed new light on the improvement of plant mineral nutrition. The current era of omics revolution has enabled the design of synthetic microbial communities (named SynComs), which are emerging as a promising tool that can allow the formulation of biofertilizers based on PGPR strains displaying multifarious and synergistic traits, thus leading to an increasingly efficient root acquisition of more than a single essential nutrient at the same time. Additionally, host-mediated microbiome engineering (HMME) leverages advanced omics techniques to reintroduce alleles coding for beneficial compounds, reinforcing positive plant-microbiome interactions and creating plants capable of producing their own biofertilizers. We also discusses the current use of PGPR-based biofertilizers and point out possible avenues of research for the future development of more efficient biofertilizers for a smarter and more precise crop fertilization. Furthermore, concerns have been raised about the effectiveness of PGPR-based biofertilizers in real field conditions, as their success in controlled experiments often contrasts with inconsistent field results. This discrepancy highlights the need for standardized protocols to ensure consistent application and reliable outcomes.
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15
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Griffin C, Oz MT, Demirer GS. Engineering plant-microbe communication for plant nutrient use efficiency. Curr Opin Biotechnol 2024; 88:103150. [PMID: 38810302 DOI: 10.1016/j.copbio.2024.103150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 05/13/2024] [Accepted: 05/13/2024] [Indexed: 05/31/2024]
Abstract
Nutrient availability and efficient use are critical for crop productivity. Current agricultural practices rely on excessive chemical fertilizers, contributing to greenhouse gas emissions and environmental pollution. Rhizosphere microbes facilitate plant nutrient acquisition and contribute to nutrient use efficiency. Thus, engineering plant-microbe communication within the rhizosphere emerges as a promising and sustainable strategy to enhance agricultural productivity. Recent advances in plant engineering have enabled the development of plants capable of selectively enriching beneficial microbes through root exudates. At the same time, synthetic biology techniques have produced microbes capable of improving nutrient availability and uptake by plants. By engineering plant-microbe communication, researchers aim to harness beneficial soil microbes, thereby offering a targeted and efficient approach to optimizing plant nutrient use efficiency.
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Affiliation(s)
- Catherine Griffin
- Department of Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - M Tufan Oz
- Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Gozde S Demirer
- Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
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16
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Mažylytė R, Kailiuvienė J, Mažonienė E, Orola L, Kaziūnienė J, Mažylytė K, Lastauskienė E, Gegeckas A. The Co-Inoculation Effect on Triticum aestivum Growth with Synthetic Microbial Communities (SynComs) and Their Potential in Agrobiotechnology. PLANTS (BASEL, SWITZERLAND) 2024; 13:1716. [PMID: 38931148 PMCID: PMC11207813 DOI: 10.3390/plants13121716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 06/17/2024] [Accepted: 06/18/2024] [Indexed: 06/28/2024]
Abstract
The use of rhizospheric SynComs can be a new and sustainable strategy in the agrobiotechnology sector. The objective of this study was to create the most appropriate SynCom composition; examine the ability to dissolve natural rock phosphate (RP) from Morocco in liquid-modified NBRIP medium; determine organic acids, and phytohormones; and verify plant growth promoting and nutrition uptake effect in the pot experiments of winter wheat (Triticum aestivum). A total of nine different microorganisms were isolated, which belonged to three different genera: Bacillus, Pseudomonas, and Streptomyces. Out of the 21 treatments tested, four SynComs had the best phosphate-dissolving properties: IJAK-27+44+91 (129.17 mg L-1), IIBEI-32+40 (90.95 µg mL-1), IIIDEG-45+41 (122.78 mg L-1), and IIIDEG-45+41+72 (120.78 mg L-1). We demonstrate that these SynComs are capable of producing lactic, acetic, gluconic, malic, oxalic, citric acids, and phytohormones such as indole-3-acetic acid, zeatin, gibberellic acid, and abscisic acid. In pot experiments with winter wheat, we also demonstrated that the designed SynComs were able to effectively colonize the plant root rhizosphere and contributed to more abundant plant growth characteristics and nutrient uptake as uninoculated treatment or uninoculated treatment with superphosphate (NPK 0-19-0). The obtained results show that the SynCom compositions of IJAK-27+44+91, IIBEI-32+40, IIIDEG-45+41, and IIIDEG-45+41+72 can be considered as promising candidates for developing biofertilizers to facilitate P absorption and increase plant nutrition.
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Affiliation(s)
- Raimonda Mažylytė
- Life Sciences Center, Institute of Biosciences, Vilnius University, LT-10257 Vilnius, Lithuania; (K.M.); (E.L.); (A.G.)
| | | | - Edita Mažonienė
- Roquette Amilina, LT-35101 Panevezys, Lithuania; (J.K.); (E.M.)
| | - Liana Orola
- Faculty of Chemistry, University of Latvia, LV-1004 Riga, Latvia;
| | - Justina Kaziūnienė
- Institute of Agriculture, Lithuanian Research Centre for Agriculture and Forestry, LT-58344 Akademija, Lithuania;
| | - Kamilė Mažylytė
- Life Sciences Center, Institute of Biosciences, Vilnius University, LT-10257 Vilnius, Lithuania; (K.M.); (E.L.); (A.G.)
| | - Eglė Lastauskienė
- Life Sciences Center, Institute of Biosciences, Vilnius University, LT-10257 Vilnius, Lithuania; (K.M.); (E.L.); (A.G.)
| | - Audrius Gegeckas
- Life Sciences Center, Institute of Biosciences, Vilnius University, LT-10257 Vilnius, Lithuania; (K.M.); (E.L.); (A.G.)
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17
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Quiroga S, Rosado-Porto D, Ratering S, Rekowski A, Schulz F, Krutych M, Zörb C, Schnell S. Long-term detection of Hartmannibacter diazotrophicus on winter wheat and spring barley roots under field conditions revealed positive correlations on yield parameters with the bacterium abundance. FEMS Microbiol Ecol 2024; 100:fiae023. [PMID: 38366928 PMCID: PMC10939331 DOI: 10.1093/femsec/fiae023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 02/09/2024] [Accepted: 02/15/2024] [Indexed: 02/19/2024] Open
Abstract
Monitoring of bioinoculants once released into the field remains largely unexplored; thus, more information is required about their survival and interactions after root colonization. Therefore, specific primers were used to perform a long-term tracking to elucidate the effect of Hartmannibacter diazotrophicus on wheat and barley production at two experimental organic agriculture field stations. Three factors were evaluated: organic fertilizer application (with and without), row spacing (15 and 50 cm), and bacterial inoculation (H. diazotrophicus and control without bacteria). Hartmannibacter diazotrophicus was detected by quantitative polymerase chain reaction on the roots (up to 5 × 105 copies g-1 dry weight) until advanced developmental stages under field conditions during two seasons, and mostly in one farm. Correlation analysis showed a significant effect of H. diazotrophicus copy numbers on the yield parameters straw yield (increase of 453 kg ha-1 in wheat compared to the mean) and crude grain protein concentration (increase of 0.30% in wheat and 0.80% in barley compared to the mean). Our findings showed an apparently constant presence of H. diazotrophicus on both wheat and barley roots until 273 and 119 days after seeding, respectively, and its addition and concentration in the roots are associated with higher yields in one crop.
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Affiliation(s)
- Santiago Quiroga
- Institute of Applied Microbiology, IFZ, Justus-Liebig University Giessen, 35392 Giessen, Germany
| | - David Rosado-Porto
- Institute of Applied Microbiology, IFZ, Justus-Liebig University Giessen, 35392 Giessen, Germany
- Faculty of Basic and Biomedical Sciences, Simón Bolívar University, 080002 Barranquilla, Colombia
| | - Stefan Ratering
- Institute of Applied Microbiology, IFZ, Justus-Liebig University Giessen, 35392 Giessen, Germany
| | - Azin Rekowski
- Institute of Crop Science, Quality of Plant Products, 340e, University of Hohenheim, 70593 Stuttgart, Germany
| | - Franz Schulz
- Department of Agronomy and Plant Breeding II, Justus-Liebig University Giessen, 35394 Giessen, Germany
| | - Marina Krutych
- Institute of Applied Microbiology, IFZ, Justus-Liebig University Giessen, 35392 Giessen, Germany
| | - Christian Zörb
- Institute of Crop Science, Quality of Plant Products, 340e, University of Hohenheim, 70593 Stuttgart, Germany
| | - Sylvia Schnell
- Institute of Applied Microbiology, IFZ, Justus-Liebig University Giessen, 35392 Giessen, Germany
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18
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Capo L, Sopegno A, Reyneri A, Ujvári G, Agnolucci M, Blandino M. Agronomic strategies to enhance the early vigor and yield of maize part II: the role of seed applied biostimulant, hybrid, and starter fertilization on crop performance. FRONTIERS IN PLANT SCIENCE 2023; 14:1240313. [PMID: 38023856 PMCID: PMC10656683 DOI: 10.3389/fpls.2023.1240313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 08/09/2023] [Indexed: 12/01/2023]
Abstract
Maize cropping systems need to be re-designed, within a sustainable intensification context, by focusing on the application of high-use efficiency crop practices, such as those that are able to enhance an early plant vigor in the first critical growth stages; such practices could lead to significant agronomic and yield benefits. The aim of this study has been to evaluate the effects of the cultivation of hybrids with superior early vigor, of the distribution of starter fertilizers at sowing, and of the seed application of biostimulants on promoting plant growth and grain yield in full factorial experiments carried out in both a growth chamber and in open fields. The greatest benefits, in terms of plant growth enhancement (plant height, biomass, leaf area) and cold stress mitigation, were detected for the starter fertilization, followed by the use of an early vigor hybrid and a biostimulant seed treatment. The starter fertilization and the early vigor hybrid led to earlier flowering dates, that is, of 2.1 and 2.8 days, respectively, and significantly reduced grain moisture at harvest. Moreover, the early vigor hybrid, the starter NP fertilization, and the biostimulant treatment increased grain yield by 8.5%, 6.0%, and 5.1%, respectively, compared to the standard hybrid and the untreated controls. The combination of all the considered factors resulted in the maximum benefits, compared to the control cropping system, with an increase in the plant growth of 124%, a reduction of the sowing-flowering period of 5 days, and a gain in grain yield of 14%. When choosing the most suitable crop practice, the diversity of each cropping system should be considered, according to the pedo-climatic conditions, the agronomic background, the yield potential, and the supply chain requirements.
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Affiliation(s)
- Luca Capo
- Department of Agriculture, Forest and Food Sciences, University of Turin, Grugliasco, Italy
| | - Alessandro Sopegno
- Department of Agriculture, Forest and Food Sciences, University of Turin, Grugliasco, Italy
| | - Amedeo Reyneri
- Department of Agriculture, Forest and Food Sciences, University of Turin, Grugliasco, Italy
| | - Gergely Ujvári
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
| | - Monica Agnolucci
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
| | - Massimo Blandino
- Department of Agriculture, Forest and Food Sciences, University of Turin, Grugliasco, Italy
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19
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Ali S, Tyagi A, Mir RA, Rather IA, Anwar Y, Mahmoudi H. Plant beneficial microbiome a boon for improving multiple stress tolerance in plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1266182. [PMID: 37767298 PMCID: PMC10520250 DOI: 10.3389/fpls.2023.1266182] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 08/28/2023] [Indexed: 09/29/2023]
Abstract
Beneficial microbes or their products have been key drivers for improving adaptive and growth features in plants under biotic and abiotic stress conditions. However, the majority of these studies so far have been utilized against individual stressors. In comparison to individual stressors, the combination of many environmental stresses that plants experience has a greater detrimental effect on them and poses a threat to their existence. Therefore, there is a need to explore the beneficial microbiota against combined stressors or multiple stressors, as this will offer new possibilities for improving plant growth and multiple adaptive traits. However, recognition of the multifaceted core beneficial microbiota from plant microbiome under stress combinations will require a thorough understanding of the functional and mechanistic facets of plant microbiome interactions under different environmental conditions in addition to agronomic management practices. Also, the development of tailored beneficial multiple stress tolerant microbiota in sustainable agriculture necessitates new model systems and prioritizes agricultural microbiome research. In this review, we provided an update on the effect of combined stressors on plants and their microbiome structure. Next, we discussed the role of beneficial microbes in plant growth promotion and stress adaptation. We also discussed how plant-beneficial microbes can be utilized for mitigating multiple stresses in plants. Finally, we have highlighted some key points that warrant future investigation for exploring plant microbiome interactions under multiple stressors.
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Affiliation(s)
- Sajad Ali
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, Republic of Korea
| | - Anshika Tyagi
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, Republic of Korea
| | - Rakeeb Ahmad Mir
- Department of Biotechnology, Central University of Kashmir, Ganderbal, India
| | - Irfan A. Rather
- Department of Biological Sciences, Faculty of Science, King Abdulaziz University (KAU), Jeddah, Saudi Arabia
| | - Yasir Anwar
- Department of Biological Sciences, Faculty of Science, King Abdulaziz University (KAU), Jeddah, Saudi Arabia
| | - Henda Mahmoudi
- Directorate of Programs, International Center for Biosaline Agriculture, Dubai, United Arab Emirates
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20
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Dunn MF, Becerra-Rivera VA. The Biosynthesis and Functions of Polyamines in the Interaction of Plant Growth-Promoting Rhizobacteria with Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:2671. [PMID: 37514285 PMCID: PMC10385936 DOI: 10.3390/plants12142671] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/12/2023] [Accepted: 07/15/2023] [Indexed: 07/30/2023]
Abstract
Plant growth-promoting rhizobacteria (PGPR) are members of the plant rhizomicrobiome that enhance plant growth and stress resistance by increasing nutrient availability to the plant, producing phytohormones or other secondary metabolites, stimulating plant defense responses against abiotic stresses and pathogens, or fixing nitrogen. The use of PGPR to increase crop yield with minimal environmental impact is a sustainable and readily applicable replacement for a portion of chemical fertilizer and pesticides required for the growth of high-yielding varieties. Increased plant health and productivity have long been gained by applying PGPR as commercial inoculants to crops, although with uneven results. The establishment of plant-PGPR relationships requires the exchange of chemical signals and nutrients between the partners, and polyamines (PAs) are an important class of compounds that act as physiological effectors and signal molecules in plant-microbe interactions. In this review, we focus on the role of PAs in interactions between PGPR and plants. We describe the basic ecology of PGPR and the production and function of PAs in them and the plants with which they interact. We examine the metabolism and the roles of PAs in PGPR and plants individually and during their interaction with one another. Lastly, we describe some directions for future research.
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Affiliation(s)
- Michael F Dunn
- Programa de Genómica Funcional de Procariotes, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca 62210, Mexico
| | - Víctor A Becerra-Rivera
- Programa de Genómica Funcional de Procariotes, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca 62210, Mexico
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21
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Yadav RC, Sharma SK, Varma A, Singh UB, Kumar A, Bhupenchandra I, Rai JP, Sharma PK, Singh HV. Zinc-solubilizing Bacillus spp. in conjunction with chemical fertilizers enhance growth, yield, nutrient content, and zinc biofortification in wheat crop. Front Microbiol 2023; 14:1210938. [PMID: 37469421 PMCID: PMC10352851 DOI: 10.3389/fmicb.2023.1210938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Accepted: 05/29/2023] [Indexed: 07/21/2023] Open
Abstract
Micronutrient deficiency is a serious health issue in resource-poor human populations worldwide, which is responsible for the death of millions of women and underage children in most developing countries. Zinc (Zn) malnutrition in middle- and lower-class families is rampant when daily calorie intake of staple cereals contains extremely low concentrations of micronutrients, especially Zn and Fe. Looking at the importance of the problem, the present investigation aimed to enhance the growth, yield, nutrient status, and biofortification of wheat crop by inoculation of native zinc-solubilizing Bacillus spp. in conjunction with soil-applied fertilizers (NPK) and zinc phosphate in saline soil. In this study, 175 bacterial isolates were recovered from the rhizosphere of wheat grown in the eastern parts of the Indo-Gangetic Plain of India. These isolates were further screened for Zn solubilization potential using sparingly insoluble zinc carbonate (ZnCO3), zinc oxide (ZnO), and zinc phosphate {Zn3(PO4)2} as a source of Zn under in vitro conditions. Of 175 bacterial isolates, 42 were found to solubilize either one or two or all the three insoluble Zn compounds, and subsequently, these isolates were identified based on 16S rRNA gene sequences. Based on zone halo diameter, solubilization efficiency, and amount of solubilized zinc, six potential bacterial strains, i.e., Bacillus altitudinis AJW-3, B. subtilis ABW-30, B. megaterium CHW-22, B. licheniformis MJW-38, Brevibacillus borstelensis CHW-2, and B. xiamenensis BLW-7, were further shortlisted for pot- and field-level evaluation in wheat crop. The results of the present investigation clearly indicated that these inoculants not only increase plant growth but also enhance the yield and yield attributes. Furthermore, bacterial inoculation also enhanced available nutrients and microbial activity in the wheat rhizosphere under pot experiments. It was observed that the application of B. megaterium CHW-22 significantly increased the Zn content in wheat straw and grains along with other nutrients (N, P, K, Fe, Cu, and Mn) followed by B. licheniformis MJW-38 as compared to other inoculants. By and large, similar observations were recorded under field conditions. Interestingly, when comparing the nutrient use efficiency (NUE) of wheat, bacterial inoculants showed their potential in enhancing the NUE in a greater way, which was further confirmed by correlation and principal component analyses. This study apparently provides evidence of Zn biofortification in wheat upon bacterial inoculation in conjunction with chemical fertilizers and zinc phosphate in degraded soil under both nethouse and field conditions.
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Affiliation(s)
- Ramesh Chandra Yadav
- Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh, India
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Uttar Pradesh, India
| | - Sushil K. Sharma
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Uttar Pradesh, India
| | - Ajit Varma
- Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh, India
| | - Udai B. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Uttar Pradesh, India
| | - Adarsh Kumar
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Uttar Pradesh, India
| | - Ingudam Bhupenchandra
- Farm Science Centre, ICAR-Research Complex for North Eastern Hill Region, Tamenglong, Manipur, India
| | - Jai P. Rai
- Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
| | - Pawan K. Sharma
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Uttar Pradesh, India
| | - Harsh V. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Uttar Pradesh, India
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22
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Ning X, Lin M, Huang G, Mao J, Gao Z, Wang X. Research progress on iron absorption, transport, and molecular regulation strategy in plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1190768. [PMID: 37465388 PMCID: PMC10351017 DOI: 10.3389/fpls.2023.1190768] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 05/04/2023] [Indexed: 07/20/2023]
Abstract
Iron is a trace element essential for normal plant life activities and is involved in various metabolic pathways such as chlorophyll synthesis, photosynthesis, and respiration. Although iron is highly abundant in the earth's crust, the amount that can be absorbed and utilized by plants is very low. Therefore, plants have developed a series of systems for absorption, transport, and utilization in the course of long-term evolution. This review focuses on the findings of current studies of the Fe2+ absorption mechanism I, Fe3+ chelate absorption mechanism II and plant-microbial interaction iron absorption mechanism, particularly effective measures for artificially regulating plant iron absorption and transportation to promote plant growth and development. According to the available literature, the beneficial effects of using microbial fertilizers as iron fertilizers are promising but further evidence of the interaction mechanism between microorganisms and plants is required.
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Affiliation(s)
- Xinyi Ning
- Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China
- College of Environmental And Chemical Engineering, Nanchang Hangkong University, Nanchang, China
- Kiwifruit Engineering Research Center of Jiangxi Province, Nanchang, China
| | - Mengfei Lin
- Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China
- Kiwifruit Engineering Research Center of Jiangxi Province, Nanchang, China
| | - Guohua Huang
- Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China
- College of Environmental And Chemical Engineering, Nanchang Hangkong University, Nanchang, China
- Kiwifruit Engineering Research Center of Jiangxi Province, Nanchang, China
| | - Jipeng Mao
- Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China
- Kiwifruit Engineering Research Center of Jiangxi Province, Nanchang, China
| | - Zhu Gao
- Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China
- Kiwifruit Engineering Research Center of Jiangxi Province, Nanchang, China
- JInstitute of Biotechnology, Jiangxi Academy of Sciences, Ji’an, Jiangxi, China
| | - Xiaoling Wang
- Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China
- Kiwifruit Engineering Research Center of Jiangxi Province, Nanchang, China
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23
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Housh AB, Noel R, Powell A, Waller S, Wilder SL, Sopko S, Benoit M, Powell G, Schueller MJ, Ferrieri RA. Studies Using Mutant Strains of Azospirillum brasilense Reveal That Atmospheric Nitrogen Fixation and Auxin Production Are Light Dependent Processes. Microorganisms 2023; 11:1727. [PMID: 37512900 PMCID: PMC10383956 DOI: 10.3390/microorganisms11071727] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 06/27/2023] [Accepted: 06/29/2023] [Indexed: 07/30/2023] Open
Abstract
As the use of microbial inoculants in agriculture rises, it becomes important to understand how the environment may influence microbial ability to promote plant growth. This work examines whether there are light dependencies in the biological functions of Azospirillum brasilense, a commercialized prolific grass-root colonizer. Though classically defined as non-phototrophic, A. brasilense possesses photoreceptors that could perceive light conducted through its host's roots. Here, we examined the light dependency of atmospheric biological nitrogen fixation (BNF) and auxin biosynthesis along with supporting processes including ATP biosynthesis, and iron and manganese uptake. Functional mutants of A. brasilense were studied in light and dark environments: HM053 (high BNF and auxin production), ipdC (capable of BNF, deficient in auxin production), and FP10 (capable of auxin production, deficient in BNF). HM053 exhibited the highest rate of nitrogenase activity with the greatest light dependency comparing iterations in light and dark environments. The ipdC mutant showed similar behavior with relatively lower nitrogenase activity observed, while FP10 did not show a light dependency. Auxin biosynthesis showed strong light dependencies in HM053 and FP10 strains, but not for ipdC. Ferrous iron is involved in BNF, and a light dependency was observed for microbial 59Fe2+ uptake in HM053 and ipdC, but not FP10. Surprisingly, a light dependency for 52Mn2+ uptake was only observed in ipdC. Finally, ATP biosynthesis was sensitive to light across all three mutants favoring blue light over red light compared to darkness with observed ATP levels in descending order for HM053 > ipdC > FP10.
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Affiliation(s)
- Alexandra Bauer Housh
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Chemistry Department, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | - Randi Noel
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- Division of Plant Science & Technology, University of Missouri, Columbia, MO 65211, USA
| | - Avery Powell
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- School of Natural Resources, University of Missouri, Columbia, MO 65211, USA
| | - Spenser Waller
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- School of Natural Resources, University of Missouri, Columbia, MO 65211, USA
| | - Stacy L Wilder
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
| | - Stephanie Sopko
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA
| | - Mary Benoit
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Division of Plant Science & Technology, University of Missouri, Columbia, MO 65211, USA
| | - Garren Powell
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA
| | - Michael J Schueller
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Chemistry Department, University of Missouri, Columbia, MO 65211, USA
| | - Richard A Ferrieri
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA
- Chemistry Department, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- Division of Plant Science & Technology, University of Missouri, Columbia, MO 65211, USA
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24
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Foresto E, Carezzano ME, Giordano W, Bogino P. Ascochyta Blight in Chickpea: An Update. J Fungi (Basel) 2023; 9:jof9020203. [PMID: 36836317 PMCID: PMC9960938 DOI: 10.3390/jof9020203] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/01/2023] [Accepted: 02/02/2023] [Indexed: 02/09/2023] Open
Abstract
Chickpea (Cicer arietinum L.), one of the most cultivated legumes worldwide, is crucial for the economy of several countries and a valuable source of nutrients. Yields may be severely affected by Ascochyta blight, a disease caused by the fungus Ascochyta rabiei. Molecular and pathological studies have not yet managed to establish its pathogenesis, since it is highly variable. Similarly, much remains to be elucidated about plant defense mechanisms against the pathogen. Further knowledge of these two aspects is fundamental for the development of tools and strategies to protect the crop. This review summarizes up-to-date information on the disease's pathogenesis, symptomatology, and geographical distribution, as well as on the environmental factors that favor infection, host defense mechanisms, and resistant chickpea genotypes. It also outlines existing practices for integrated blight management.
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Affiliation(s)
- Emiliano Foresto
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Departamento de Biología Molecular, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Río Cuarto X5804BYA, Córdoba, Argentina
- Facultad de Agronomía y Veterinaria, Universidad Nacional de Río Cuarto, Río Cuarto X5804BYA, Córdoba, Argentina
| | - María Evangelina Carezzano
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Departamento de Biología Molecular, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Río Cuarto X5804BYA, Córdoba, Argentina
| | - Walter Giordano
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Departamento de Biología Molecular, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Río Cuarto X5804BYA, Córdoba, Argentina
- Correspondence: (W.G.); (P.B.); Tel.: +54-0358-4676 (ext. 114) (W.G.); Fax: +54-0358-4676 (ext. 232) (P.B.)
| | - Pablo Bogino
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Departamento de Biología Molecular, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Río Cuarto X5804BYA, Córdoba, Argentina
- Correspondence: (W.G.); (P.B.); Tel.: +54-0358-4676 (ext. 114) (W.G.); Fax: +54-0358-4676 (ext. 232) (P.B.)
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