1
|
Sguanci M, Palomares SM, Cangelosi G, Petrelli F, Sandri E, Ferrara G, Mancin S. Artificial Intelligence in the Management of Malnutrition in Cancer Patients: A Systematic Review. Adv Nutr 2025:100438. [PMID: 40334987 DOI: 10.1016/j.advnut.2025.100438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Revised: 04/23/2025] [Accepted: 04/28/2025] [Indexed: 05/09/2025] Open
Abstract
Malnutrition is a critical complication among cancer patients, affecting ≤80% of individuals depending on cancer type, stage, and treatment. Artificial intelligence (AI) has emerged as a promising tool in healthcare, with potential applications in nutritional management to improve early detection, risk stratification, and personalized interventions. This systematic review evaluated the role of AI in identifying and managing malnutrition in cancer patients, focusing on its effectiveness in nutritional status assessment, prediction, clinical outcomes, and body composition monitoring. A systematic search was conducted across PubMed, Cochrane Library, Cumulative Index to Nursing and Allied Health Literature, and Excerpta Medica Database from June to July 2024, following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. Quantitative primary studies investigating AI-based interventions for malnutrition detection, body composition analysis, and nutritional optimization in oncology were included. Study quality was assessed using the Joanna Briggs Institute Critical Appraisal Tools, and evidence certainty was evaluated with the Oxford Centre for Evidence-Based Medicine framework. Eleven studies (n = 52,228 patients) met the inclusion criteria and were categorized into 3 overarching domains: nutritional status assessment and prediction, clinical and functional outcomes, and body composition and cachexia monitoring. AI-based models demonstrated high predictive accuracy in malnutrition detection (area under the curve >0.80). Machine learning algorithms, including decision trees, random forests, and support vector machines, outperformed conventional screening tools. Deep learning models applied to medical imaging achieved high segmentation accuracy (Dice similarity coefficient: 0.92-0.94), enabling early cachexia detection. AI-driven virtual dietitian systems improved dietary adherence (84%) and reduced unplanned hospitalizations. AI-enhanced workflows streamlined dietitian referrals, reducing referral times by 2.4 d. AI demonstrates significant potential in optimizing malnutrition screening, body composition monitoring, and personalized nutritional interventions for cancer patients. Its integration into oncology nutrition care could enhance patient outcomes and optimize healthcare resource allocation. Further research is necessary to standardize AI models and ensure clinical applicability. This systematic review followed a protocol registered prospectively on Open Science Framework (https://doi.org/10.17605/OSF.IO/A259M).
Collapse
Affiliation(s)
| | - Sara Morales Palomares
- Department of Pharmacy, Health and Nutritional Sciences (DFSSN), University of Calabria, Rende, Italy
| | - Giovanni Cangelosi
- School of Pharmacy, Polo Medicina Sperimentale e Sanità Pubblica "Stefania Scuri," Camerino, Italy
| | - Fabio Petrelli
- School of Pharmacy, Polo Medicina Sperimentale e Sanità Pubblica "Stefania Scuri," Camerino, Italy
| | - Elena Sandri
- Faculty of Medicine and Health Sciences, Catholic University of Valencia San Vicente Mártir, c/Quevedo, Valencia, Spain.
| | - Gaetano Ferrara
- Nephrology and Dialysis Unit, Ramazzini Hospital, Carpi, Italy
| | - Stefano Mancin
- IRCCS Humanitas Research Hospital, via Manzoni 56, 20089, Rozzano, Milan, Italy
| |
Collapse
|
2
|
Vitturi BK, Nerdal PT, Maetzler W. Collection of the digital data from the neurological examination. NPJ Digit Med 2025; 8:234. [PMID: 40312534 PMCID: PMC12046012 DOI: 10.1038/s41746-025-01659-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Accepted: 04/21/2025] [Indexed: 05/03/2025] Open
Abstract
This review presents the status quo of how far the digitalization of elements of the neurological examination has progressed. Our focus was on studies that assessed the examination conducted in person, rather than through telemedicine platforms. Five hundred and twenty studies were included in this systematic review. The digital tools covered ten elements of the neurological examination: gait (173, 33%), motor system (149, 29%), eyes (85, 16%), cognitive functions (53, 10%), sensory system (47, 9%), balance (35, 7%), other movements (24, 5%), other cranial nerves (24, 5%), coordination (10, 2%), and autonomic nervous system (9, 2%). Most of the tools were portable (442, 85%), and in 215 studies (41%) the devices were wearable. The cost of the digital tools used was described and discussed in 167 (32%) studies. Most devices (61%) had a low complexity, and half required high additional analytic effort.
Collapse
Affiliation(s)
- Bruno Kusznir Vitturi
- Department of Neurology, University Hospital Schleswig-Holstein and Kiel University, Kiel, Germany.
| | - Patrik Theodor Nerdal
- Department of Neurology, University Hospital Schleswig-Holstein and Kiel University, Kiel, Germany
| | - Walter Maetzler
- Department of Neurology, University Hospital Schleswig-Holstein and Kiel University, Kiel, Germany
| |
Collapse
|
3
|
Xu H, Xie W, Pang M, Li Y, Jin L, Huang F, Shao X. Non-invasive detection of Parkinson's disease based on speech analysis and interpretable machine learning. Front Aging Neurosci 2025; 17:1586273. [PMID: 40370753 PMCID: PMC12075230 DOI: 10.3389/fnagi.2025.1586273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2025] [Accepted: 04/21/2025] [Indexed: 05/16/2025] Open
Abstract
Objective Parkinson's disease (PD) is a progressive neurodegenerative disorder that significantly impacts motor function and speech patterns. Early detection of PD through non-invasive methods, such as speech analysis, can improve treatment outcomes and quality of life for patients. This study aims to develop an interpretable machine learning model that uses speech recordings and acoustic features to predict PD. Methods A dataset of speech recordings from individuals with and without PD was analyzed. The dataset includes features such as fundamental frequency (Fo), jitter, shimmer, noise-to-harmonics ratio (NHR), and non-linear dynamic complexity measures. Exploratory data analysis (EDA) was conducted to identify patterns and relationships in the data. The dataset was split into 70% training and 30% testing sets. To address class imbalance, synthetic minority oversampling technique (SMOTE) was applied. Several machine learning algorithms, including K-Nearest Neighbors (KNN), Support Vector Machine (SVM), Decision Trees, Random Forests, and Neural Networks, were implemented and evaluated. Model performance was assessed using accuracy, recall, F1 score, and area under the receiver operating characteristic curve (AUC-ROC) metrics. SHapley Additive exPlanations (SHAP) were used to explain the models and evaluate feature contributions. Results The analysis revealed that features related to speech instability, such as jitter, shimmer, and NHR, were highly predictive of PD. Non-linear metrics, including Recurrence Plot Dimension Entropy (RPDE) and Pitch Period Entropy (PPE), also made significant contributions to the model's predictive power. Random Forest and Gradient Boosting models achieved the highest performance, with an AUC-ROC of 0.98, recall of 0.95, ensuring minimal false negatives. SHAp values highlighted the importance of fundamental frequency variation and harmonic-to-noise ratio in distinguishing PD patients from healthy individuals. Conclusion The developed machine learning model accurately predicts Parkinson's disease using speech recordings, with Random Forest and Gradient Boosting algorithms demonstrating superior performance. Key predictive features include jitter, shimmer, and non-linear dynamic complexity measures. This study provides a reliable, non-invasive tool for early PD detection and underscores the potential of speech analysis in diagnosing neurodegenerative diseases.
Collapse
Affiliation(s)
- Huanqing Xu
- The School of Medical Information Engineering, Anhui University of Chinese Medicine, Hefei, China
| | - Wei Xie
- Jiangxi Medical College, Nanchang University, Nanchang, Jiangxi, China
| | - Mingzhen Pang
- Division of Nephrology, National Clinical Research Center for Kidney Disease, State Key Laboratory of Organ Failure Research, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Ya Li
- The School of Medical Information Engineering, Anhui University of Chinese Medicine, Hefei, China
| | - Luhua Jin
- Division of Nephrology, National Clinical Research Center for Kidney Disease, State Key Laboratory of Organ Failure Research, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Fangliang Huang
- The School of Medical Information Engineering, Anhui University of Chinese Medicine, Hefei, China
| | - Xian Shao
- Division of Nephrology, National Clinical Research Center for Kidney Disease, State Key Laboratory of Organ Failure Research, Nanfang Hospital, Southern Medical University, Guangzhou, China
| |
Collapse
|
4
|
Naeem I, Ditta A, Mazhar T, Anwar M, Saeed MM, Hamam H. Voice biomarkers as prognostic indicators for Parkinson's disease using machine learning techniques. Sci Rep 2025; 15:12129. [PMID: 40204799 PMCID: PMC11982320 DOI: 10.1038/s41598-025-96950-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Accepted: 04/01/2025] [Indexed: 04/11/2025] Open
Abstract
Many people suffer from Parkinson's disease globally, a complicated neurological condition caused by the deficiency of dopamine, an organic chemical responsible for regulating movement in individuals. Patients with Parkinson face muscle stiffness or rigidity, tremors, vocal impairment, slow movement, loss of facial expressions, and problems with balance and coordination. As there is no cure for Parkinson, early diagnosis can help prevent the progression of this disease. The study explores the potential of vocal measures as significant indicators for early prediction of Parkinson. Different machine learning models such as Support Vector Machine (SVM), Random Forest (RF), Logistic Regression (LR), and Decision Tree (DT) are used to detect Parkinson using voice measures and differentiate between the healthy and Parkinson patients. The dataset contains 195 vocal recordings from 31 patients. The Synthetic Minority Over-Sampling Technique (SMOTE) is used for handling class imbalance to improve the performance of the models. The Principal Component Analysis (PCA) method was used for feature selection. The study uses different parameters to evaluate the model's classification results. The results highlight RF as the most effective model with an accuracy of 94% and a precision of 94%. In addition, SVM achieves an accuracy score of 92%, and precision of 91%. However, with the PCA method, SVM achieves an accuracy of 89%, 92%, and 87% for RF and DT respectively. This study highlights the significance of using vocal features along with advanced machine learning methods to reliably diagnose Parkinson's disease, considering the challenges associated with early detection.
Collapse
Affiliation(s)
- Ifrah Naeem
- Department of Information Sciences, Division of Science and Technology, University of Education, Lahore, 54000, Pakistan
| | - Allah Ditta
- Department of Information Sciences, Division of Science and Technology, University of Education, Lahore, 54000, Pakistan.
| | - Tehseen Mazhar
- School of Computer Science, National College of Business Administration and Economics, Lahore, 54000, Pakistan.
- Department of Computer Science, School Education Department, Government of Punjab, Layyah, 31200, Pakistan.
| | - Muhammad Anwar
- Department of Information Sciences, Division of Science and Technology, University of Education, Lahore, 54000, Pakistan
| | - Mamoon M Saeed
- Department of Communications and Electronics Engineering, Faculty of Engineering, University of Modern Sciences (UMS), Sana'a, 00967, Yemen.
| | - Habib Hamam
- Faculty of Engineering, Uni de Moncton, Moncton, NB, E1A3E9, Canada
- Department of Electrical and Electronic Engineering Science, University of Johannesburg, Auckland Park, Johannesburg, 2006, South Africa
- International Institute of Technology and Management (IITG), Av. Grandes Ecoles, BP 1989, Libreville, Gabon
- Bridges for Academic Excellence, Spectrum, Tunis, Center-ville, Tunisia
| |
Collapse
|
5
|
Valarmathi P, Suganya Y, Saranya KR, Shanmuga Priya S. Enhancing parkinson disease detection through feature based deep learning with autoencoders and neural networks. Sci Rep 2025; 15:8624. [PMID: 40075106 PMCID: PMC11903773 DOI: 10.1038/s41598-025-88293-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2024] [Accepted: 01/28/2025] [Indexed: 03/14/2025] Open
Abstract
Parkinson's disease is a neurodegenerative disorder that is associated with aging, leading to the progressive deterioration of certain regions of the brain. Accurate and timely diagnosis plays a crucial role in facilitating optimal therapy and improving patient outcomes. This study presents an innovative approach to identify Parkinson's disease (PD) through the examination of audio waves using Feature Based - Deep Neural Network (FB-DNN) techniques. Autoencoder, a specific form of Artificial Neural Network (ANN) that is designed to excel in the task of feature extraction, is utilized in our study to effectively capture complex patterns present in audio data. Deep Neural Networks (DNNs) are utilized in the task of classification, using the capabilities of deep learning (DL) to differentiate between audio samples that exhibit Parkinson's disease (PD) and those that do not. The deep neural network (DNN) model is trained using the retrieved data, allowing it to effectively distinguish minor variations in voice characteristics that are linked to Parkinson's disease. The suggested methodology not only enhances the precision of diagnosis but also enables prompt identification, perhaps resulting in more efficacious treatment methodologies. The present study introduces a potentially effective approach for the automated and non-intrusive identification of Parkinson's disease through the analysis of audio data. The integration of Autoencoder-based feature extraction with Deep Neural Networks (DNN) presents a dependable and easily accessible solution for the early detection and continuous monitoring of Parkinson's disease. This approach has promise for significantly improving the quality of life for persons affected by this condition. The implementation in Python was conducted as part of our experimentation. Upon analyzing the accuracy, it became apparent that the Feature-Based Deep Neural Network (FB-DNN) exhibited superior performance compared to the other models. Notably, the FB-DNN achieved the highest accuracy score of 96.15%.
Collapse
Affiliation(s)
- P Valarmathi
- Department of Computer Science and Engineering, Mookambigai College of Engineering, Pudukkottai, India.
| | - Y Suganya
- Department of Computer Science and Engineering, SRM Institute of Science and Technology, Tiruchirappalli, India.
| | - K R Saranya
- Department of Computer Science and Engineering, SRM Institute of Science and Technology, Tiruchirappalli, India.
| | - S Shanmuga Priya
- Department of Computer Science and Engineering, SRM Institute of Science and Technology, Tiruchirappalli, India.
| |
Collapse
|
6
|
Mushta I, Koks S, Popov A, Lysenko O. Exploring the Potential Imaging Biomarkers for Parkinson's Disease Using Machine Learning Approach. Bioengineering (Basel) 2024; 12:11. [PMID: 39851285 PMCID: PMC11762086 DOI: 10.3390/bioengineering12010011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Revised: 12/06/2024] [Accepted: 12/18/2024] [Indexed: 01/26/2025] Open
Abstract
Parkinson's disease (PD) is a neurodegenerative disorder characterized by motor and neuropsychiatric symptoms resulting from the loss of dopamine-producing neurons in the substantia nigra pars compacta (SNc). Dopamine transporter scan (DATSCAN), based on single-photon emission computed tomography (SPECT), is commonly used to evaluate the loss of dopaminergic neurons in the striatum. This study aims to identify a biomarker from DATSCAN images and develop a machine learning (ML) algorithm for PD diagnosis. Using 13 DATSCAN-derived parameters and patient handedness from 1309 individuals in the Parkinson's Progression Markers Initiative (PPMI) database, we trained an AdaBoost classifier, achieving an accuracy of 98.88% and an area under the receiver operating characteristic (ROC) curve of 99.81%. To ensure interpretability, we applied the local interpretable model-agnostic explainer (LIME), identifying contralateral putamen SBR as the most predictive feature for distinguishing PD from healthy controls. By focusing on a single biomarker, our approach simplifies PD diagnosis, integrates seamlessly into clinical workflows, and provides interpretable, actionable insights. Although DATSCAN has limitations in detecting early-stage PD, our study demonstrates the potential of ML to enhance diagnostic precision, contributing to improved clinical decision-making and patient outcomes.
Collapse
Affiliation(s)
- Illia Mushta
- Department of Electronic Computational Equipment Design, National Technical University of Ukraine “Igor Sikorsky Kyiv Polytechnic Institute”, 03056 Kyiv, Ukraine;
| | - Sulev Koks
- Perron Institute for Neurological and Translational Science, Murdoch University, Nedlands, WA 6009, Australia;
| | - Anton Popov
- Department of Electronic Engineering, National Technical University of Ukraine “Igor Sikorsky Kyiv Polytechnic Institute”, 03056 Kyiv, Ukraine;
- Faculty of Applied Sciences, Ukrainian Catholic University, 79026 Lviv, Ukraine
| | - Oleksandr Lysenko
- Department of Electronic Computational Equipment Design, National Technical University of Ukraine “Igor Sikorsky Kyiv Polytechnic Institute”, 03056 Kyiv, Ukraine;
| |
Collapse
|
7
|
Banna HU, Slayo M, Armitage JA, Del Rosal B, Vocale L, Spencer SJ. Imaging the eye as a window to brain health: frontier approaches and future directions. J Neuroinflammation 2024; 21:309. [PMID: 39614308 PMCID: PMC11606158 DOI: 10.1186/s12974-024-03304-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Accepted: 11/18/2024] [Indexed: 12/01/2024] Open
Abstract
Recent years have seen significant advances in diagnostic testing of central nervous system (CNS) function and disease. However, there remain challenges in developing a comprehensive suite of non- or minimally invasive assays of neural health and disease progression. Due to the direct connection with the CNS, structural changes in the neural retina, retinal vasculature and morphological changes in retinal immune cells can occur in parallel with disease conditions in the brain. The retina can also, uniquely, be assessed directly and non-invasively. For these reasons, the retina may prove to be an important "window" for revealing and understanding brain disease. In this review, we discuss the gross anatomy of the eye, focusing on the sensory and non-sensory cells of the retina, especially microglia, that lend themselves to diagnosing brain disease by imaging the retina. We include a history of ocular imaging to describe the different imaging approaches undertaken in the past and outline current and emerging technologies including retinal autofluorescence imaging, Raman spectroscopy, and artificial intelligence image analysis. These new technologies show promising potential for retinal imaging to be used as a tool for the diagnosis of brain disorders such as Alzheimer's disease and others and the assessment of treatment success.
Collapse
Affiliation(s)
- Hasan U Banna
- School of Health and Biomedical Sciences, RMIT University, Bundoora, Melbourne, VIC, Australia
| | - Mary Slayo
- School of Health and Biomedical Sciences, RMIT University, Bundoora, Melbourne, VIC, Australia
- Institute of Veterinary Physiology and Biochemistry, Justus Liebig University, Giessen, Germany
| | - James A Armitage
- School of Medicine (Optometry), Deakin University, Waurn Ponds, VIC, Australia
| | | | - Loretta Vocale
- School of Health and Biomedical Sciences, RMIT University, Bundoora, Melbourne, VIC, Australia
| | - Sarah J Spencer
- School of Health and Biomedical Sciences, RMIT University, Bundoora, Melbourne, VIC, Australia.
| |
Collapse
|
8
|
Kumar R, Ruhel R, van Wijnen AJ. Unlocking biological complexity: the role of machine learning in integrative multi-omics. ACADEMIA BIOLOGY 2024; 2:10.20935/acadbiol7428. [PMID: 39830067 PMCID: PMC11741185 DOI: 10.20935/acadbiol7428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
Abstract
The increasing complexity of biological systems demands advanced analytical approaches to decode the underlying mechanisms of health and disease. Integrative multi-omics approaches use multi-layered datasets such as genomic, transcriptomic, proteomic, and metabolomic data to understand biological processes much more comprehensively compared to the single-omics analysis and to provide a comprehensive view of cellular and molecular processes. However, these integrative approaches have their own computational and analytical challenges due to the large volume and nature of multi-omics data. Machine learning has emerged as a powerful tool to help and resolve these challenges. It offers sophisticated algorithms that can identify and discover hidden patterns and provide insights into complex biological networks. By integrating machine learning in multi-omics, we can enhance our understanding of drug discovery, disease, pathway, and network analysis. Machine learning and ensemble methods allow researchers to model nonlinear relationships and manage high-dimensional data, improving the precision of predictions. This approach paves the way for personalized medicine by identifying unique molecular signatures for individual patients, which can provide valuable insights into treatment planning and support more effective treatment. As machine learning continues to evolve, its role in multi-omics analysis will be pivotal in advancing our ability to interpret biological complexity and translate findings into clinical applications.
Collapse
Affiliation(s)
- Ravindra Kumar
- Department of Psychiatry, Washington University in Saint Louis School of Medicine, Saint Louis, MO 63110, United States
| | - Rajrani Ruhel
- Department of Developmental Biology, Washington University in Saint Louis School of Medicine, Saint Louis, MO 63110, United States
| | - Andre J. van Wijnen
- Department of Biochemistry, University of Vermont, Burlington, VT 05405, United States
| |
Collapse
|
9
|
Sarantopoulos A, Mastori Kourmpani C, Yokarasa AL, Makamanzi C, Antoniou P, Spernovasilis N, Tsioutis C. Artificial Intelligence in Infectious Disease Clinical Practice: An Overview of Gaps, Opportunities, and Limitations. Trop Med Infect Dis 2024; 9:228. [PMID: 39453255 PMCID: PMC11511260 DOI: 10.3390/tropicalmed9100228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 09/22/2024] [Accepted: 09/29/2024] [Indexed: 10/26/2024] Open
Abstract
The integration of artificial intelligence (AI) in clinical medicine marks a revolutionary shift, enhancing diagnostic accuracy, therapeutic efficacy, and overall healthcare delivery. This review explores the current uses, benefits, limitations, and future applications of AI in infectious diseases, highlighting its specific applications in diagnostics, clinical decision making, and personalized medicine. The transformative potential of AI in infectious diseases is emphasized, addressing gaps in rapid and accurate disease diagnosis, surveillance, outbreak detection and management, and treatment optimization. Despite these advancements, significant limitations and challenges exist, including data privacy concerns, potential biases, and ethical dilemmas. The article underscores the need for stringent regulatory frameworks and inclusive databases to ensure equitable, ethical, and effective AI utilization in the field of clinical and laboratory infectious diseases.
Collapse
Affiliation(s)
- Andreas Sarantopoulos
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
- Brigham Women’s and Children Hospital, Boston, MA 02115, USA
| | - Christina Mastori Kourmpani
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Atshaya Lily Yokarasa
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Chiedza Makamanzi
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Polyna Antoniou
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Nikolaos Spernovasilis
- Department of Infectious Diseases, German Oncology Centre, 4108 Limassol, Cyprus;
- School of Medicine, University of Crete, 71110 Heraklion, Greece
| | - Constantinos Tsioutis
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| |
Collapse
|
10
|
Mendapara K. Development and evaluation of a chronic kidney disease risk prediction model using random forest. Front Genet 2024; 15:1409755. [PMID: 38993480 PMCID: PMC11236722 DOI: 10.3389/fgene.2024.1409755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 05/29/2024] [Indexed: 07/13/2024] Open
Abstract
This research aims to advance the detection of Chronic Kidney Disease (CKD) through a novel gene-based predictive model, leveraging recent breakthroughs in gene sequencing. We sourced and merged gene expression profiles of CKD-affected renal tissues from the Gene Expression Omnibus (GEO) database, classifying them into two sets for training and validation in a 7:3 ratio. The training set included 141 CKD and 33 non-CKD specimens, while the validation set had 60 and 14, respectively. The disease risk prediction model was constructed using the training dataset, while the validation dataset confirmed the model's identification capabilities. The development of our predictive model began with evaluating differentially expressed genes (DEGs) between the two groups. We isolated six genes using Lasso and random forest (RF) methods-DUSP1, GADD45B, IFI44L, IFI30, ATF3, and LYZ-which are critical in differentiating CKD from non-CKD tissues. We refined our random forest (RF) model through 10-fold cross-validation, repeated five times, to optimize the mtry parameter. The performance of our model was robust, with an average AUC of 0.979 across the folds, translating to a 91.18% accuracy. Validation tests further confirmed its efficacy, with a 94.59% accuracy and an AUC of 0.990. External validation using dataset GSE180394 yielded an AUC of 0.913, 89.83% accuracy, and a sensitivity rate of 0.889, underscoring the model's reliability. In summary, the study identified critical genetic biomarkers and successfully developed a novel disease risk prediction model for CKD. This model can serve as a valuable tool for CKD disease risk assessment and contribute significantly to CKD identification.
Collapse
Affiliation(s)
- Krish Mendapara
- Faculty of Health Sciences, Queen's University, Kingston, ON, Canada
| |
Collapse
|
11
|
Abumalloh RA, Nilashi M, Samad S, Ahmadi H, Alghamdi A, Alrizq M, Alyami S. Parkinson's disease diagnosis using deep learning: A bibliometric analysis and literature review. Ageing Res Rev 2024; 96:102285. [PMID: 38554785 DOI: 10.1016/j.arr.2024.102285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 03/20/2024] [Accepted: 03/24/2024] [Indexed: 04/02/2024]
Abstract
Parkinson's Disease (PD) is a progressive neurodegenerative illness triggered by decreased dopamine secretion. Deep Learning (DL) has gained substantial attention in PD diagnosis research, with an increase in the number of published papers in this discipline. PD detection using DL has presented more promising outcomes as compared with common machine learning approaches. This article aims to conduct a bibliometric analysis and a literature review focusing on the prominent developments taking place in this area. To achieve the target of the study, we retrieved and analyzed the available research papers in the Scopus database. Following that, we conducted a bibliometric analysis to inspect the structure of keywords, authors, and countries in the surveyed studies by providing visual representations of the bibliometric data using VOSviewer software. The study also provides an in-depth review of the literature focusing on different indicators of PD, deployed approaches, and performance metrics. The outcomes indicate the firm development of PD diagnosis using DL approaches over time and a large diversity of studies worldwide. Additionally, the literature review presented a research gap in DL approaches related to incremental learning, particularly in relation to big data analysis.
Collapse
Affiliation(s)
- Rabab Ali Abumalloh
- Department of Computer Science and Engineering, Qatar University, Doha 2713, Qatar
| | - Mehrbakhsh Nilashi
- Institute of Research and Development, Duy Tan University, Da Nang, Vietnam; School of Computer Science, Duy Tan University, Da Nang, Vietnam; UCSI Graduate Business School, UCSI University, No. 1 Jalan Menara Gading, UCSI Heights, Cheras, Kuala Lumpur 56000, Malaysia; Centre for Global Sustainability Studies (CGSS), Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Sarminah Samad
- Faculty of Business, UNITAR International University, Tierra Crest, Jalan SS6/3, Petaling Jaya, Selangor 47301, Malaysia
| | - Hossein Ahmadi
- Centre for Health Technology, Faculty of Health, University of Plymouth, Plymouth PL4 8AA, UK
| | - Abdullah Alghamdi
- Information Systems Dept., College of Computer Science and Information Systems, Najran University, Najran, Saudi Arabia; AI Lab, Scientific and Engineering Research Center (SERC), Najran University, Najran, Saudi Arabia
| | - Mesfer Alrizq
- Information Systems Dept., College of Computer Science and Information Systems, Najran University, Najran, Saudi Arabia; AI Lab, Scientific and Engineering Research Center (SERC), Najran University, Najran, Saudi Arabia
| | - Sultan Alyami
- AI Lab, Scientific and Engineering Research Center (SERC), Najran University, Najran, Saudi Arabia; Computer Science Dept., College of Computer Science and Information Systems, Najran University, Najran, Saudi Arabia
| |
Collapse
|
12
|
Krishnan G, Singh S, Pathania M, Gosavi S, Abhishek S, Parchani A, Dhar M. Artificial intelligence in clinical medicine: catalyzing a sustainable global healthcare paradigm. Front Artif Intell 2023; 6:1227091. [PMID: 37705603 PMCID: PMC10497111 DOI: 10.3389/frai.2023.1227091] [Citation(s) in RCA: 84] [Impact Index Per Article: 42.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 08/09/2023] [Indexed: 09/15/2023] Open
Abstract
As the demand for quality healthcare increases, healthcare systems worldwide are grappling with time constraints and excessive workloads, which can compromise the quality of patient care. Artificial intelligence (AI) has emerged as a powerful tool in clinical medicine, revolutionizing various aspects of patient care and medical research. The integration of AI in clinical medicine has not only improved diagnostic accuracy and treatment outcomes, but also contributed to more efficient healthcare delivery, reduced costs, and facilitated better patient experiences. This review article provides an extensive overview of AI applications in history taking, clinical examination, imaging, therapeutics, prognosis and research. Furthermore, it highlights the critical role AI has played in transforming healthcare in developing nations.
Collapse
Affiliation(s)
- Gokul Krishnan
- Department of Internal Medicine, Kasturba Medical College, Manipal, India
| | - Shiana Singh
- Department of Emergency Medicine, All India Institute of Medical Sciences, Rishikesh, India
| | - Monika Pathania
- Department of Geriatric Medicine, All India Institute of Medical Sciences, Rishikesh, India
| | - Siddharth Gosavi
- Department of Internal Medicine, Kasturba Medical College, Manipal, India
| | - Shuchi Abhishek
- Department of Internal Medicine, Kasturba Medical College, Manipal, India
| | - Ashwin Parchani
- Department of Geriatric Medicine, All India Institute of Medical Sciences, Rishikesh, India
| | - Minakshi Dhar
- Department of Geriatric Medicine, All India Institute of Medical Sciences, Rishikesh, India
| |
Collapse
|