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Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages. J Am Chem Soc 2024; 146:11657-11668. [PMID: 38641862 DOI: 10.1021/jacs.3c13830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/21/2024]
Abstract
All protein-directed syntheses of metal nanoclusters (NCs) and nanoparticles (NPs) have attracted considerable attention because protein scaffolds provide a unique metal coordination environment and can adjust the shape and morphology of NCs and NPs. However, the detailed formation mechanisms of NCs or NPs directed by protein templates remain unclear. In this study, by taking advantage of the ferritin nanocage as a biotemplate to monitor the growth of Fe-O NCs as a function of time, we synthesized a series of iron NCs with different sizes and shapes and subsequently solved their corresponding three-dimensional atomic-scale structures by X-ray protein crystallography and cryo-electron microscopy. The time-dependent structure analyses revealed the growth process of these Fe-O NCs with the 4-fold channel of ferritin as nucleation sites. To our knowledge, the newly biosynthesized Fe35O23Glu12 represents the largest Fe-O NCs with a definite atomic structure. This study contributes to our understanding of the formation mechanism of iron NCs and provides an effective method for metal NC synthesis.
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Affiliation(s)
- Wenming Wang
- Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Hongfang Xi
- Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Dan Fu
- State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin 300071, China
| | - Danyang Ma
- Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Wenjun Gong
- Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Yaqin Zhao
- Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Xiaomei Li
- Shanxi Provincial Key Laboratory of Protein Structure Determination, Shanxi Academy of Advanced Research and Innovation, Taiyuan 030012, China
| | - Lijie Wu
- IHuman Institute, ShanghaiTech University, Shanghai 201210, China
| | - Yu Guo
- State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin 300071, China
| | - Guanghua Zhao
- College of Food Science & Nutritional Engineering, China Agricultural University, Beijing 100083, China
| | - Hongfei Wang
- Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
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Chung A, Chung YT, Liang YW, Chung YL. Waldeyer ring microbiome in relation to chemoradiation-induced oral mucositis in patients with nasopharyngeal carcinoma. Head Neck 2023; 45:2047-2057. [PMID: 37337976 DOI: 10.1002/hed.27431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 05/24/2023] [Accepted: 06/10/2023] [Indexed: 06/21/2023] Open
Abstract
BACKGROUND Waldeyer lymphatic ring surrounds the nasopharynx and oropharynx, and no study to date has correlated its microbiome with the severity of oral mucositis (OM) in patients with nasopharyngeal carcinoma (NPC) receiving chemoradiotherapy. METHODS We performed 16S rRNA sequencing to characterize bacterial microbiome in tumor-affected nasopharynx and the surrounding normal oropharynx. We plotted the abundance and diversity of bacterial taxa and their phylogenetic distance and networks to visualize and compare the differences in pretreatment overall bacterial communities between the nasopharynx and oropharynx in patients with NPC with varying degrees of chemoradiotherapy-induced OM and quality of life. RESULTS We found microbial signatures in nasopharynx around NPC were not only dissimilar to those in the surrounding oropharynx but were almost unique to each patient. The genetic distance metrics further showed that different tumor microbiota distributions in the nasopharynx among patients with NPC were well-correlated with OM severity and quality of life during chemoradiotherapy. CONCLUSIONS At Waldeyer ring, the tumor-associated microbiome risk profiles of the respiratory region of nasopharynx, but not commensal microbiota of the alimentary region of oropharynx, could be noninvasive biomarkers for OM susceptibility and might include drug targets for the prevention of chemoradiation-induced OM in patients with Waldeyer ring-derived NPC.
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Affiliation(s)
- Allan Chung
- Department of Industrial Design, National Taipei University of Technology, Taipei, Taiwan
| | - Yu-Ting Chung
- Department of Computer Science & Engineering, Yuan Ze University, Taoyuan, Taiwan
| | - Yo-Wen Liang
- Department of Industrial Design, National Taipei University of Technology, Taipei, Taiwan
| | - Yih-Lin Chung
- Department of Radiation Oncology, Koo Foundation Sun-Yat-Sen Cancer Center, Taipei, Taiwan
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Polo C, García-Seco T, Díez-Guerrier A, Briones V, Domínguez L, Pérez-Sancho M. What about the bull? A systematic review about the role of males in bovine infectious infertility within cattle herds. Vet Anim Sci 2023; 19:100284. [PMID: 36647444 PMCID: PMC9840180 DOI: 10.1016/j.vas.2023.100284] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Numerous pathogens affect cow fertility. Nevertheless, little information has been published about microorganisms associated with cattle infertility focusing on bulls. The present review offers a current analysis and highlights potential key aspects on the relevance of bulls in the emergence of infertility problems of infectious origin within herds that are still not completely determined. The present systematic review was conducted using the PubMed, Web of Science, and Scopus databases on December 9, 2022. In total, 2,224 bibliographic records were reviewed and, according to strict inclusion criteria, 38 articles were selected from 1966 to 2022, from which we ranked more than 27 different microorganisms (fungi were not identified). The most cited pathogens were BoHV (described by 26.3% of the papers), Campylobacter fetus (23.7%), Tritrichomonas foetus (18.4%), and BVDV, Ureaplasma spp., and Mycoplasma spp. (10.5% each). Despite the general trend towards an increasing number of publications about bull-infertility problems, a number of pathogens potentially transmitted through both natural breeding and seminal doses given to females and associated with infertility within herds were not ranked in the study (e.g., Chlamydia spp.). This work highlights i) the need to clearly establish the role of certain microorganisms not traditionally associated with reproductive problems in bull infertility (e.g., Staphylococcus spp. or BoHV-4) and ii) the need to perform additional studies on breeding bulls to clarify their role in infertility problems within herds. This would allow monitoring for pathogens that have gone unnoticed and those that are fastidious to diagnose and/or potentially transmitted to females.
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Affiliation(s)
- Coral Polo
- VISAVET Health Surveillance Center, Universidad Complutense de Madrid, Puerta de Hierro s/n, 28040 Madrid, Spain,MAEVA SERVET S.L., Calle de la Fragua 3, 28749 Alameda del Valle, Madrid, Spain
| | - Teresa García-Seco
- VISAVET Health Surveillance Center, Universidad Complutense de Madrid, Puerta de Hierro s/n, 28040 Madrid, Spain
| | - Alberto Díez-Guerrier
- MAEVA SERVET S.L., Calle de la Fragua 3, 28749 Alameda del Valle, Madrid, Spain,Department of Animal Health, Veterinary Faculty, Universidad Complutense de Madrid, Av. Puerta de Hierro s/n, 28040 Madrid, Spain
| | - Víctor Briones
- Department of Animal Health, Veterinary Faculty, Universidad Complutense de Madrid, Av. Puerta de Hierro s/n, 28040 Madrid, Spain
| | - Lucas Domínguez
- VISAVET Health Surveillance Center, Universidad Complutense de Madrid, Puerta de Hierro s/n, 28040 Madrid, Spain,Department of Animal Health, Veterinary Faculty, Universidad Complutense de Madrid, Av. Puerta de Hierro s/n, 28040 Madrid, Spain
| | - Marta Pérez-Sancho
- VISAVET Health Surveillance Center, Universidad Complutense de Madrid, Puerta de Hierro s/n, 28040 Madrid, Spain,Department of Animal Health, Veterinary Faculty, Universidad Complutense de Madrid, Av. Puerta de Hierro s/n, 28040 Madrid, Spain,Corresponding author at: VISAVET Health Surveillance Center, Universidad Complutense de Madrid, Puerta de Hierro s/n, 28040 Madrid, Spain.
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Messman RD, Lemley CO. Bovine neonatal microbiome origins: a review of proposed microbial community presence from conception to colostrum. Transl Anim Sci 2023; 7:txad057. [PMID: 37334245 PMCID: PMC10276551 DOI: 10.1093/tas/txad057] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 05/24/2023] [Indexed: 06/20/2023] Open
Abstract
In recent years, there has been an influx of research evaluating the roles of the reproductive tract microbiota in modulating reproductive performance. These efforts have resulted in a breadth of research exploring the bovine reproductive tract microbiota. The female reproductive tract microbiota has been characterized during the estrus cycle, at timed artificial insemination, during gestation, and postpartum. Additionally, there are recently published studies investigating in-utero inoculation of the bovine fetus. However, critical review of the literature to understand how the microbial shifts during a dam's lifecycle could impact neonatal outcomes is limited. This review demonstrates a consistency at the phyla level throughout both the maternal, paternal, and neonatal microbiomes. Moreover, this review challenges the current gestational inoculation hypothesis and suggests instead a maturation of the resident uterine microbiota throughout gestation to parturition. Recent literature is indicative of microbial composition influencing metabolomic parameters that have developmental programming effects in feed utilization and metabolic performance later in life. Thus, this review enumerates the potential origins of neonatal microbial inoculation from conception, through gestation, parturition, and colostrum consumption while introducing clear paucities where future research is needed to better understand the ramifications of the reproductive microbiome on neonates.
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Affiliation(s)
- Riley D Messman
- Department of Animal and Dairy Sciences, Mississippi State University, Mississippi State, MS 39762, USA
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Greenwood EC, Torok VA, van Wettere WHEJ. Characterizing the vaginal microbiota of high and low producing Poll Merino and White Suffolk ewes. Transl Anim Sci 2022; 6:txac133. [PMID: 36324437 PMCID: PMC9616124 DOI: 10.1093/tas/txac133] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 09/26/2022] [Indexed: 11/19/2023] Open
Abstract
There is a substantial, and growing, body of research focused on manipulating gastrointestinal microbes to affect health and production. However, the maternal vaginal microbiota and its effects on neonatal inoculation and lifetime production have received little attention. We aimed to characterize the vaginal microbes of domesticated sheep to determine whether they differ across sheep breeds with differing meat and wool growth potentials and to determine a link between vaginal microbes and high and low producing animals. A flock of White Suffolk (n = 136) and Poll Merino (n = 210) ewes were sorted by the Australian Sheep Breeding Values (ASBV), for yearling fleece weight in the Merino and by post-weaning weight in the Suffolk ewes. The top and bottom ASBV sheep were selected for sampling and the resulting treatment groups were; High Suffolk (n = 12), Low Suffolk (n = 12), High Merino (n = 12), and Low Merino (n = 12) ewes. A double guarded culture swab was used to sample from the surface of the vaginal epithelium. Diversity profiling analysis of vaginal bacterial communities was conducted using 16S rRNA amplicon sequencing. Breed and ASBV group differences in bacterial communities were tested. Within breed, there were no significant differences in ewe vaginal bacterial communities associated with ewe production parameters; however, there was a significant difference in ewe vaginal bacterial communities between breeds. We have been able to characterize the normal vaginal microbiota of nonpregnant ewes and demonstrate a rich microbial community.
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Affiliation(s)
- Emma C Greenwood
- Davies Livestock Research Centre, School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, South Australia 5371, Australia
| | - Valeria A Torok
- Davies Livestock Research Centre, School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, South Australia 5371, Australia
- South Australian Research and Development Institute (SARDI), Food Sciences, Urrbrae, South Australia 5064, Australia
| | - William H E J van Wettere
- Davies Livestock Research Centre, School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, South Australia 5371, Australia
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Idiopathic necrotic enteritis responsible for suckler calf deaths. Vet Rec 2022; 191:247-250. [PMID: 36149707 DOI: 10.1002/vetr.2254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Santos-Junior MN, Neves WS, Santos RS, Almeida PP, Fernandes JM, Guimarães BCDB, Barbosa MS, da Silva LSC, Gomes CP, Sampaio BA, Rezende IDS, Correia TML, Neres NSDM, Campos GB, Bastos BL, Timenetsky J, Marques LM. Heterologous Expression, Purification, and Immunomodulatory Effects of Recombinant Lipoprotein GUDIV-103 Isolated from Ureaplasma diversum. Microorganisms 2022; 10:microorganisms10051032. [PMID: 35630474 PMCID: PMC9147684 DOI: 10.3390/microorganisms10051032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 05/05/2022] [Accepted: 05/07/2022] [Indexed: 02/06/2023] Open
Abstract
Ureaplasma diversum is a bacterial pathogen that infects cattle and can cause severe inflammation of the genital and reproductive systems. Lipid-associated membrane proteins (LAMPs), including GUDIV-103, are the main virulence factors in this bacterium. In this study, we heterologously expressed recombinant GUDIV-103 (rGUDIV-103) in Escherichia coli, purified it, and evaluated its immunological reactivity and immunomodulatory effects in bovine peripheral blood mononuclear cells (PBMCs). Samples from rabbits inoculated with purified rGUDIV-103 were analysed using indirect enzyme-linked immunosorbent assay and dot blotting to confirm polyclonal antibody production and assess kinetics, respectively. The expression of this lipoprotein in field isolates was confirmed via Western blotting with anti-rGUDIV-103 serum and hydrophobic or hydrophilic proteins from 42 U. diversum strains. Moreover, the antibodies produced against the U. diversum ATCC 49783 strain recognised rGUDIV-103. The mitogenic potential of rGUDIV-103 was evaluated using a lymphoproliferation assay in 5(6)-carboxyfluorescein diacetate succinimidyl ester−labelled bovine PBMCs, where it induced lymphocyte proliferation. Quantitative polymerase chain reaction analysis revealed that the expression of interleukin-1β, toll-like receptor (TLR)-α, TLR2, TLR4, inducible nitric oxide synthase, and caspase-3−encoding genes increased more in rGUDIV-103−treated PBMCs than in untreated cells (p < 0.05). Treating PBMCs with rGUDIV-103 increased nitric oxide and hydrogen peroxide levels. The antigenic and immunogenic properties of rGUDIV-103 suggested its suitability for immunobiological application.
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Affiliation(s)
- Manoel Neres Santos-Junior
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Wanderson Souza Neves
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
| | - Ronaldo Silva Santos
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
| | - Palloma Porto Almeida
- Bioinformatics and Computational Biology Lab, Division of Experimental and Translational Research, Brazilian National Cancer Institute (INCA), Rio de Janeiro 20231-050, Brazil;
| | - Janaina Marinho Fernandes
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
| | - Bruna Carolina de Brito Guimarães
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Maysa Santos Barbosa
- Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo 05508-000, Brazil; (M.S.B.); (I.d.S.R.); (J.T.)
| | - Lucas Santana Coelho da Silva
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Camila Pacheco Gomes
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Beatriz Almeida Sampaio
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Izadora de Souza Rezende
- Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo 05508-000, Brazil; (M.S.B.); (I.d.S.R.); (J.T.)
| | - Thiago Macedo Lopes Correia
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
| | - Nayara Silva de Macedo Neres
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
| | - Guilherme Barreto Campos
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Bruno Lopes Bastos
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
| | - Jorge Timenetsky
- Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo 05508-000, Brazil; (M.S.B.); (I.d.S.R.); (J.T.)
| | - Lucas Miranda Marques
- Department of Biointeraction, Multidisciplinary Institute of Health, Federal University of Bahia, Vitória da Conquista 40170-110, Brazil; (M.N.S.-J.); (W.S.N.); (R.S.S.); (J.M.F.); (T.M.L.C.); (N.S.d.M.N.)
- Department of Biology, and Biotechnology of Microorganisms, State University of Santa Cruz (UESC), Ilhéus 45662-900, Brazil; (B.C.d.B.G.); (L.S.C.d.S.); (C.P.G.); (B.A.S.); (G.B.C.); (B.L.B.)
- Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo 05508-000, Brazil; (M.S.B.); (I.d.S.R.); (J.T.)
- Correspondence:
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