Extracting Features from Poincaré Plots to Distinguish Congestive Heart Failure Patients According to NYHA Classes

Heart failure classification using deep learning to extract spatiotemporal features from ECG

BACKGROUND

Heart failure is a syndrome with complex clinical manifestations. Due to increasing population aging, heart failure has become a major medical problem worldwide. In this study, we used the MIMIC-III public database to extract the temporal and spatial characteristics of electrocardiogram (ECG) signals from patients with heart failure.

METHODS

We developed a NYHA functional classification model for heart failure based on a deep learning method. We introduced an integrating attention mechanism based on the CNN-LSTM-SE model, segmenting the ECG signal into 2 to 20 s long segments. Ablation experiments showed that the 12 s ECG signal segments could be used with the proposed deep learning model for superior classification of heart failure.

RESULTS

The accuracy, positive predictive value, sensitivity, and specificity of the NYHA functional classification method were 99.09, 98.9855, 99.033, and 99.649%, respectively.

CONCLUSIONS

The comprehensive performance of this model exceeds similar methods and can be used to assist in clinical medical diagnoses.

Combined mechanistic modeling and machine-learning approaches in systems biology - A systematic literature review

BACKGROUND AND OBJECTIVE

Mechanistic-based Model simulations (MM) are an effective approach commonly employed, for research and learning purposes, to better investigate and understand the inherent behavior of biological systems. Recent advancements in modern technologies and the large availability of omics data allowed the application of Machine Learning (ML) techniques to different research fields, including systems biology. However, the availability of information regarding the analyzed biological context, sufficient experimental data, as well as the degree of computational complexity, represent some of the issues that both MMs and ML techniques could present individually. For this reason, recently, several studies suggest overcoming or significantly reducing these drawbacks by combining the above-mentioned two methods. In the wake of the growing interest in this hybrid analysis approach, with the present review, we want to systematically investigate the studies available in the scientific literature in which both MMs and ML have been combined to explain biological processes at genomics, proteomics, and metabolomics levels, or the behavior of entire cellular populations.

METHODS

Elsevier Scopus®, Clarivate Web of Science™ and National Library of Medicine PubMed® databases were enquired using the queries reported in Table 1, resulting in 350 scientific articles.

RESULTS

Only 14 of the 350 documents returned by the comprehensive search conducted on the three major online databases met our search criteria, i.e. present a hybrid approach consisting of the synergistic combination of MMs and ML to treat a particular aspect of systems biology.

CONCLUSIONS

Despite the recent interest in this methodology, from a careful analysis of the selected papers, it emerged how examples of integration between MMs and ML are already present in systems biology, highlighting the great potential of this hybrid approach to both at micro and macro biological scales.

sEMG Spectral Analysis and Machine Learning Algorithms Are Able to Discriminate Biomechanical Risk Classes Associated with Manual Material Liftings

Manual material handling and load lifting are activities that can cause work-related musculoskeletal disorders. For this reason, the National Institute for Occupational Safety and Health proposed an equation depending on the following parameters: intensity, duration, frequency, and geometric characteristics associated with the load lifting. In this paper, we explore the feasibility of several Machine Learning (ML) algorithms, fed with frequency-domain features extracted from electromyographic (EMG) signals of back muscles, to discriminate biomechanical risk classes defined by the Revised NIOSH Lifting Equation. The EMG signals of the multifidus and erector spinae muscles were acquired by means of a wearable device for surface EMG and then segmented to extract several frequency-domain features relating to the Total Power Spectrum of the EMG signal. These features were fed to several ML algorithms to assess their prediction power. The ML algorithms produced interesting results in the classification task, with the Support Vector Machine algorithm outperforming the others with accuracy and Area under the Receiver Operating Characteristic Curve values of up to 0.985. Moreover, a correlation between muscular fatigue and risky lifting activities was found. These results showed the feasibility of the proposed methodology-based on wearable sensors and artificial intelligence-to predict the biomechanical risk associated with load lifting. A future investigation on an enriched study population and additional lifting scenarios could confirm the potential of the proposed methodology and its applicability in the field of occupational ergonomics.

Artificial intelligence and heart failure: A state-of-the-art review

Heart failure (HF) is a heterogeneous syndrome affecting more than 60 million individuals globally. Despite recent advancements in understanding of the pathophysiology of HF, many issues remain including residual risk despite therapy, understanding the pathophysiology and phenotypes of patients with HF and preserved ejection fraction, and the challenges related to integrating a large amount of disparate information available for risk stratification and management of these patients. Risk prediction algorithms based on artificial intelligence (AI) may have superior predictive ability compared to traditional methods in certain instances. AI algorithms can play a pivotal role in the evolution of HF care by facilitating clinical decision making to overcome various challenges such as allocation of treatment to patients who are at highest risk or are more likely to benefit from therapies, prediction of adverse outcomes, and early identification of patients with subclinical disease or worsening HF. With the ability to integrate and synthesize large amounts of data with multidimensional interactions, AI algorithms can supply information with which physicians can improve their ability to make timely and better decisions. In this review, we provide an overview of the AI algorithms that have been developed for establishing early diagnosis of HF, phenotyping HF with preserved ejection fraction, and stratifying HF disease severity. This review also discusses the challenges in clinical deployment of AI algorithms in HF, and the potential path forward for developing future novel learning-based algorithms to improve HF care.

Using Features Extracted From Upper Limb Reaching Tasks to Detect Parkinson's Disease by Means of Machine Learning Models

While in the literature there is much interest in investigating lower limbs gait of patients affected by neurological diseases, such as Parkinson's Disease (PD), fewer publications involving upper limbs movements are available. In previous studies, 24 motion signals (the so-called reaching tasks) of the upper limbs of PD patients and Healthy Controls (HCs) were used to extract several kinematic features through a custom-made software; conversely, the aim of our paper is to investigate the possibility to build models-using these features-for distinguishing PD patients from HCs. First, a binary logistic regression and, then, a Machine Learning (ML) analysis was performed by implementing five algorithms through the Knime Analytics Platform. The ML analysis was performed twice: first, a leave-one out-cross validation was applied; then, a wrapper feature selection method was implemented to identify the best subset of features that could maximize the accuracy. The binary logistic regression achieved an accuracy of 90.5%, demonstrating the importance of the maximum jerk during subjects upper limb motion; the Hosmer-Lemeshow test supported the validity of this model (p-value=0.408). The first ML analysis achieved high evaluation metrics by overcoming 95% of accuracy; the second ML analysis achieved a perfect classification with 100% of both accuracy and area under the curve receiver operating characteristics. The top-five features in terms of importance were the maximum acceleration, smoothness, duration, maximum jerk and kurtosis. The investigation carried out in our work has proved the predictive power of the features, extracted from the reaching tasks involving the upper limbs, to distinguish HCs and PD patients.

A Logistic Regression Model for Biomechanical Risk Classification in Lifting Tasks

Lifting is one of the most potentially harmful activities for work-related musculoskeletal disorders (WMSDs), due to exposure to biomechanical risk. Risk assessment for work activities that involve lifting loads can be performed through the NIOSH (National Institute of Occupational Safety and Health) method, and specifically the Revised NIOSH Lifting Equation (RNLE). Aim of this work is to explore the feasibility of a logistic regression model fed with time and frequency domains features extracted from signals acquired through one inertial measurement unit (IMU) to classify risk classes associated with lifting activities according to the RNLE. Furthermore, an attempt was made to evaluate which are the most discriminating features relating to the risk classes, and to understand which inertial signals and which axis were the most representative. In a simplified scenario, where only two RNLE variables were altered during lifting tasks performed by 14 healthy adults, inertial signals (linear acceleration and angular velocity) acquired using one IMU placed on the subject's sternum during repeated rhythmic lifting tasks were automatically segmented to extract several features in the time and frequency domains. The logistic regression model fed with significant features showed good results to discriminate "risk" and "no risk" NIOSH classes with an accuracy, sensitivity and specificity equal to 82.8%, 84.8% and 80.9%, respectively. This preliminary work indicated that a logistic regression model-fed with specific inertial features extracted by signals acquired using a single IMU sensor placed on the sternum-is able to discriminate risk classes according to the RNLE in a simplified context, and therefore could be a valid tool to assess the biomechanical risk in an automatic way also in more complex conditions (e.g., real working scenarios).

Bidimensional and Tridimensional Poincaré Maps in Cardiology: A Multiclass Machine Learning Study

Heart rate is a nonstationary signal and its variation may contain indicators of current disease or warnings about impending cardiac diseases. Hence, heart rate variation analysis has become a noninvasive tool to further study the activities of the autonomic nervous system. In this scenario, the Poincaré plot analysis has proven to be a valuable tool to support cardiac diseases diagnosis. The study’s aim is a preliminary exploration of the feasibility of machine learning to classify subjects belonging to five cardiac states (healthy, hypertension, myocardial infarction, congestive heart failure and heart transplanted) using ten unconventional quantitative parameters extracted from bidimensional and three-dimensional Poincaré maps. Knime Analytic Platform was used to implement several machine learning algorithms: Gradient Boosting, Adaptive Boosting, k-Nearest Neighbor and Naïve Bayes. Accuracy, sensitivity and specificity were computed to assess the performances of the predictive models using the leave-one-out cross-validation. The Synthetic Minority Oversampling technique was previously performed for data augmentation considering the small size of the dataset and the number of features. A feature importance, ranked on the basis of the Information Gain values, was computed. Preliminarily, a univariate statistical analysis was performed through one-way Kruskal Wallis plus post-hoc for all the features. Machine learning analysis achieved interesting results in terms of evaluation metrics, such as demonstrated by Adaptive Boosting and k-Nearest Neighbor (accuracies greater than 90%). Gradient Boosting and k-Nearest Neighbor reached even 100% score in sensitivity and specificity, respectively. The most important features according to information gain are in line with the results obtained from the statistical analysis confirming their predictive power. The study shows the proposed combination of unconventional features extracted from Poincaré maps and well-known machine learning algorithms represents a valuable approach to automatically classify patients with different cardiac diseases. Future investigations on enriched datasets will further confirm the potential application of this methodology in diagnostic.