Controlling the human microbiome

We coexist with a vast number of microbes that live in and on our bodies. Those microbes and their genes are collectively known as the human microbiome, which plays important roles in human physiology and diseases. We have acquired extensive knowledge of the organismal compositions and metabolic functions of the human microbiome. However, the ultimate proof of our understanding of the human microbiome is reflected in our ability to manipulate it for health benefits. To facilitate the rational design of microbiome-based therapies, there are many fundamental questions to be addressed at the systems level. Indeed, we need a deep understanding of the ecological dynamics associated with such a complex ecosystem before we rationally design control strategies. In light of this, this review discusses progress from various fields, e.g., community ecology, network science, and control theory, that are helping us make progress toward the ultimate goal of controlling the human microbiome.

Recent Trends in Biogenic Gas, Waste and Wastewater Fermentation

In recent years, the optimization of bioprocesses for the removal of pollutants from industrial biogenic gas emissions, waste and wastewater has been the focus of intensive research. Recently developed technologies not only aim to remove such pollutants, but also to valorize them, whenever possible, through their bioconversion into useful added-value products. In this domain of progressive research, lab-, pilot-, and demonstration-scale studies are dealing with the fermentation of biogenic gases (e.g., CO2, CO, and CH4), waste or wastewater to produce a range of biofuels and valuable products, based on the activity of pure or mixed cultures of native or recombinant aerobic and anaerobic bacteria, algae, or yeasts as biocatalysts. Waste can also be converted to syngas, which can subsequently be fermented as well. A broad range of bioproducts can be obtained, e.g., biofuels and several other platform chemicals and products. This environmentally-friendly biorefinery approach addresses the need to build modern societies according to the concept of a circular economy, and yields products of commercial interest. Different examples of such approaches are described in this collection of scientific reports.

Comprehensive ADM1 Extensions to Tackle Some Operational and Metabolic Aspects in Anaerobic Digestion

Modelling in anaerobic digestion will play a crucial role as a tool for smart monitoring and supervision of the process performance and stability. By far, the Anaerobic Digestion Model No. 1 (ADM1) has been the most recognized and exploited model to represent this process. This study aims to propose simple extensions for the ADM1 model to tackle some overlooked operational and metabolic aspects. Extensions for the discontinuous feeding process, the reduction of the active working volume, the transport of the soluble compound from the bulk to the cell interior, and biomass acclimation are presented in this study. The model extensions are included by a change in the mass balance of the process in batch and continuous operation, the incorporation of a transfer equation governed by the gradient between the extra- and intra- cellular concentration, and a saturation-type function where the time has an explicit influence on the kinetic parameters, respectively. By adding minimal complexity to the existing ADM1, the incorporation of these phenomena may help to understand some underlying process issues that remain unexplained by the current model structure, broadening the scope of the model for control and monitoring industrial applications.

Pilot-Scale Anaerobic Treatment of Printing and Dyeing Wastewater and Performance Prediction Based on Support Vector Regression

Printing and dyeing wastewater is characterized with complex water quality and poor biodegradability. In this study, a pilot-scale anaerobic baffled reactor (ABR) with packing was verified to effectively degrade the complex organic pollutants in the wastewater through the hydrolysis and acidification of anaerobic microorganisms. At a hydraulic retention time (HRT) of 12 h and an organic loading rate (OLR) of 2.0–2.5 kg COD/(m3·d), the ABR stabilized the fluctuation range of pH and achieved an average colority removal rate of 10.5%, which provided favorable conditions for subsequent aerobic treatment. During the early operation period, the reactor increased the alkalinity of the wastewater; after 97 days of operation, the volatile fatty acid (VFA) content in the wastewater decreased. To demonstrate the suitability of the support vector regression (SVR) technology in predicting the performance of the reactor, two SVR algorithms with three kernel functions were employed to relate the chemical oxygen demand (COD) removal rate to its influencing factors, and the predictions of both the training and validation groups agreed with the measurements. The results obtained from this study can contribute to the design and optimal operation of the anaerobic treatment project of the industrial wastewater treatment plant.