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Hara T, Meng S, Motooka D, Sato H, Arao Y, Tsuji Y, Yabumoto T, Doki Y, Eguchi H, Uchida S, Ishii H. Fat and proteolysis due to methionine, tryptophan, and niacin deficiency leads to alterations in gut microbiota and immune modulation in inflammatory bowel disease. Cancer Sci 2024. [PMID: 38679799 DOI: 10.1111/cas.16153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 02/22/2024] [Accepted: 03/04/2024] [Indexed: 05/01/2024] Open
Abstract
Inflammatory bowel disease (IBD) is one of the intractable diseases. Nutritional components associated with IBD have been identified, and it is known that excessive methionine intake exacerbates inflammation, and that tryptophan metabolism is involved in inflammation. Analysis of the gut microbiota has also progressed, where Lactobacillus regulate immune cells in the intestine and suppress inflammation. However, whether the methionine and tryptophan metabolic pathways affect the growth of intestinal Lactobacillus is unknown. Here we show how transient methionine, tryptophan, and niacin deficiency affects the host and gut microbiota in mouse models of colitis (induced by dextran sodium sulfate) fed a methionine-deficient diet (1K), tryptophan and niacin-deficient diet (2K), or methionine, tryptophan, and niacin-deficient diet (3K). These diets induced body weight decrease and 16S rRNA analysis of mouse feces revealed the alterations in the gut microbiota, leading to a dramatic increase in the proportion of Lactobacillus in mice. Intestinal RNA sequencing data confirmed that the expression of several serine proteases and fat-metabolizing enzymes were elevated in mice fed with methionine, tryptophan, and niacin (MTN) deficient diet. In addition, one-carbon metabolism and peroxisome proliferator-activated receptor (PPAR) pathway activation were also induced with MTN deficiency. Furthermore, changes in the expression of various immune-related cytokines were observed. These results indicate that methionine, tryptophan, and niacin metabolisms are important for the composition of intestinal bacteria and host immunity. Taken together, MTN deficiencies may serve as a Great Reset of gut microbiota and host gene expression to return to good health.
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Grants
- 17cm0106414h0002 Ministry of Education, Culture, Sports, Science and Technology
- JP21lm0203007 Ministry of Education, Culture, Sports, Science and Technology
- 18KK0251 Ministry of Education, Culture, Sports, Science and Technology
- 19K22658 Ministry of Education, Culture, Sports, Science and Technology
- 20H00541 Ministry of Education, Culture, Sports, Science and Technology
- 21K19526 Ministry of Education, Culture, Sports, Science and Technology
- 22H03146 Ministry of Education, Culture, Sports, Science and Technology
- 22K19559 Ministry of Education, Culture, Sports, Science and Technology
- 23K19505 Ministry of Education, Culture, Sports, Science and Technology
- 23K18313 Ministry of Education, Culture, Sports, Science and Technology
- 16H06279 Ministry of Education, Culture, Sports, Science and Technology
- 2023 Takahashi Industrial and Economic Research Foundation
- 2021-48 Mitsubishi Foundation
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Affiliation(s)
- Tomoaki Hara
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
| | - Sikun Meng
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
| | - Daisuke Motooka
- Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Suita, Japan
| | - Hiromichi Sato
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
- Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, Japan
| | - Yasuko Arao
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
| | - Yoshiko Tsuji
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
| | - Takeshi Yabumoto
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
- Kinshu-kai Medical Corporation, Osaka, Japan
| | - Yuichiro Doki
- Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, Japan
| | - Hidetoshi Eguchi
- Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, Japan
| | - Shizuka Uchida
- Center for RNA Medicine, Department of Clinical Medicine, Aalborg University, Copenhagen, Denmark
| | - Hideshi Ishii
- Department of Medical Data Science, Center of Medical Innovation and Translational Research, Osaka University Graduate School of Medicine, Osaka, Japan
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Rizzello F, Saracino IM, Gionchetti P, Valerii MC, Ricci C, Imbesi V, Filippone E, Bellocchio I, Dussias NK, Dervieux T, Spisni E. Nutritional Biomarkers for the Prediction of Response to Anti-TNF-α Therapy in Crohn's Disease: New Tools for New Approaches. Nutrients 2024; 16:280. [PMID: 38257172 PMCID: PMC10818399 DOI: 10.3390/nu16020280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 01/09/2024] [Accepted: 01/11/2024] [Indexed: 01/24/2024] Open
Abstract
Crohn's disease (CD) is a chronic disorder of the digestive tract characterized by an uncontrolled immune-mediated inflammatory response in genetically predisposed individuals exposed to environmental risk factors. Although diet has been identified as one of the major environmental risk factors, the role of nutrients in the clinical management of CD patients has not yet been fully investigated. In this prospective observational study, fifty-four patients diagnosed with active Crohn's disease and undergoing anti-TNF-α biological therapy were enrolled and subjected to nutrient intake analysis through a daily food diary. Their nutrient intake and blood values were analyzed before and after 6 months of biological therapy. After 6 months of anti-TNF-α, four patients dropped out of the study, leaving 29 patients in clinical remission and 21 still with active disease that remained the same. The aim of this study was to identify nutrients whose intake or blood values may be associated with patients' responses to biological therapy. In the diet, patients remaining with active CD showed very similar nutrient dietary intake compared to patients achieving remission except for a trend for lower starting zinc intake, below the reference value. In the blood, instead, patients who did not respond to biological therapy showed significantly lower plasma values of iron and taurine before starting biological anti-TNF-α treatment.
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Affiliation(s)
- Fernando Rizzello
- IBD Unit, IRCCS, Azienda Ospedaliero-Universitaria di Bologna, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy; (F.R.); (P.G.); (V.I.); (E.F.); (N.K.D.)
- Department of Medical and Surgical and Sciences, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy
| | - Ilaria Maria Saracino
- Microbiology Unit, IRCCS, Azienda Ospedaliero-Universitaria di Bologna, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy;
| | - Paolo Gionchetti
- IBD Unit, IRCCS, Azienda Ospedaliero-Universitaria di Bologna, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy; (F.R.); (P.G.); (V.I.); (E.F.); (N.K.D.)
- Department of Medical and Surgical and Sciences, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy
| | - Maria Chiara Valerii
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Dr. Selmi 3, 40126 Bologna, Italy; (I.B.); (E.S.)
| | - Chiara Ricci
- Gastroenterology Unit, ASST Spedali Civili di Brescia, University of Brescia, Piazza del Mercato 15, 25121 Brescia, Italy;
| | - Veronica Imbesi
- IBD Unit, IRCCS, Azienda Ospedaliero-Universitaria di Bologna, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy; (F.R.); (P.G.); (V.I.); (E.F.); (N.K.D.)
- Department of Medical and Surgical and Sciences, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy
| | - Eleonora Filippone
- IBD Unit, IRCCS, Azienda Ospedaliero-Universitaria di Bologna, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy; (F.R.); (P.G.); (V.I.); (E.F.); (N.K.D.)
- Department of Medical and Surgical and Sciences, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy
| | - Irene Bellocchio
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Dr. Selmi 3, 40126 Bologna, Italy; (I.B.); (E.S.)
| | - Nikolas Konstantine Dussias
- IBD Unit, IRCCS, Azienda Ospedaliero-Universitaria di Bologna, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy; (F.R.); (P.G.); (V.I.); (E.F.); (N.K.D.)
- Department of Medical and Surgical and Sciences, University of Bologna, Via Dr. Massarenti 9, 40138 Bologna, Italy
| | - Thierry Dervieux
- Prometheus Laboratories, 9410 Carroll Park Dr., San Diego, CA 92121, USA;
| | - Enzo Spisni
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Dr. Selmi 3, 40126 Bologna, Italy; (I.B.); (E.S.)
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