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Fang C, Yang Y, Zhang S, He Y, Pan S, Zhou L, Wang J, Yang H. Unveiling the impact of microplastics with distinct polymer types and concentrations on tidal sediment microbiome and nitrogen cycling. JOURNAL OF HAZARDOUS MATERIALS 2024; 472:134387. [PMID: 38723479 DOI: 10.1016/j.jhazmat.2024.134387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 04/17/2024] [Accepted: 04/21/2024] [Indexed: 05/30/2024]
Abstract
Microplastics (MPs) are distributed widely in the ocean surface waters and sediments. Increasing MPs contamination in intertidal zone profoundly impacts microbial ecosystem services and biogeochemical process. Little is known about the response of tidal sediment microbiome to MPs. We conducted a 30-day laboratory microcosm study using five polymers (PE, PBS, PC, PLA and PET) at three concentrations (1 %, 2 % and 5 %, w/w). High throughput sequencing of 16 S rRNA, qPCR and enzyme activity test were applied to demonstrate the response of microbial community and nitrogen cycling functional genes to MPs. MPs reduced the microbial alpha diversity and the microbial dissimilarity while the effects of PLA-MPs were concentration dependent. LEfSe analysis indicated that the Proteobacteria predominated for all MP treatments. Mantel's test, RDA and correlation analysis implied that pH may be the key environmental factor for causing microbial alterations. MPs enhanced nitrogen fixation in tidal sediment. PLA levels of 1 % but not 5 % produced the most significant effects in nitrogen cycling functional microbiota and genes. PLS-PM revealed that impacts of MPs on tidal sediment microbial communities and nitrogen cycling were dominated by indirect effects. Our study deepened understanding and filled the knowledge gap of MP contaminants affecting tidal sediment microbial nitrogen cycling.
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Affiliation(s)
- Chang Fang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Yuting Yang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Shuping Zhang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Yinglin He
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Sentao Pan
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Lei Zhou
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Jun Wang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Huirong Yang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China.
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2
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Hu T, Yamaura M, Pham DM, Kasai T, Katayama A. Wide distribution of extracellular electron transfer functionality in natural proteinaceous organic materials for microbial reductive dehalogenation. J Biosci Bioeng 2023; 135:238-249. [PMID: 36646568 DOI: 10.1016/j.jbiosc.2022.12.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 11/23/2022] [Accepted: 12/09/2022] [Indexed: 01/16/2023]
Abstract
Extracellular electron transfer materials (EETMs) in the environment, such as humic substances and biochar, are formed from the humification/heating of natural organic materials. However, the distribution of extracellular electron transfer (EET) functionality in fresh natural organic materials has not yet been explored. In the present study, we reveal the wide distribution of EET functionality in proteinaceous materials for the first time using an anaerobic pentachlorophenol dechlorinating consortium, whose activity depends on EETM. Out of 11 natural organic materials and 13 reference compounds, seven proteinaceous organic materials (albumin, beef, milk, pork, soybean, yolk, and bovine serum albumin) functioned as EETMs. Carbohydrates and lipids did not function as EETMs. Comparative spectroscopic analyses suggested that a β-sheet secondary structure was essential for proteins to function as EETMs, regardless of water solubility. A high content of reduced sulfur was potentially involved in EET functionality. Although proteinaceous materials have thus far been considered simply as nutrients, the wide distribution of EET functionality in these materials provides new insights into their impact on biogeochemical cycles. In addition, structural information on EET functionality can provide a scientific basis for the development of eco-friendly EETMs.
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Affiliation(s)
- Tingting Hu
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan
| | - Mirai Yamaura
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan
| | - Duyen Minh Pham
- Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan
| | - Takuya Kasai
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan; Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan
| | - Arata Katayama
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan; Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan.
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3
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Hu T, Pham DM, Kasai T, Katayama A. The Emergence of Extracellular Electron Mediating Functionality in Rice Straw-Artificial Soil Mixture during Humification. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:15173. [PMID: 36429897 PMCID: PMC9691237 DOI: 10.3390/ijerph192215173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 11/14/2022] [Accepted: 11/15/2022] [Indexed: 06/16/2023]
Abstract
This study aimed to elucidate the origin of extracellular electron mediating (EEM) functionality and redox-active center(s) in humic substances, where they are ubiquitously distributed. Here, we show the emergence of EEM functionality during the humification of rice straw in artificial soil (kaolin and sand) with a matric potential of -100 cm at 20 °C for one year. We used the dechlorination activity of an EEM material-dependent pentachlorophenol-dechlorinating anaerobic microbial consortium as an index of the EEM functionality. Although rice straw and its mixture with artificial soil did not initially have EEM functionality, it emerged after one month of humification and increased until six months after which the functionality was maintained for one year. Chemical and electrochemical characterizations demonstrated that the emergence and increase in EEM functionality were correlated with the degradation of rice straw, formation of quinone structures, a decrease in aromatic structures, an increase in nitrogenous and aliphatic structures, and specific electric capacitance during humification. The newly formed quinone structure was suggested as a potential redox-active center for the EEM functionality. These findings provide novel insights into the dynamic changes in EEM functionality during the humification of organic materials.
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Affiliation(s)
- Tingting Hu
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Nagoya 464-8603, Japan
| | - Duyen Minh Pham
- Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Nagoya 464-8603, Japan
| | - Takuya Kasai
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Nagoya 464-8603, Japan
- Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Nagoya 464-8603, Japan
| | - Arata Katayama
- Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Nagoya 464-8603, Japan
- Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Nagoya 464-8603, Japan
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4
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Dey S, Kasai T, Katayama A. Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin. Front Microbiol 2022; 13:853411. [PMID: 35992702 PMCID: PMC9389315 DOI: 10.3389/fmicb.2022.853411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 06/23/2022] [Indexed: 11/25/2022] Open
Abstract
Although biological nitrogen fixation (BNF) proceeds under mild conditions compared to the energy-intensive Haber–Bosch process, the slow kinetics of BNF necessitate the promotion of BNF activity in its practical application. The BNF promotion using purified nitrogenases and using genetically modified microorganisms has been studied, but these enzymes are unstable and expensive; moreover, designing genetically modified microorganisms is also a difficult task. Alternatively, the BNF promotion in non-modified (wild-type) microorganisms (enriched consortia) with humin has been shown, which is a humic substance insoluble at any pH and functions as an extracellular electron mediator. However, the taxonomic distribution of the diazotrophs promoted by humin, the levels of BNF promotion, and the underlying mechanism in BNF promotion with humin remain unknown. In this study, we show that taxonomically diverse heterotrophic diazotrophs, harboring nifH clusters I, II, and III, promoted their BNF by accepting extracellular electrons from humin, based on the characterization of the individual responses of isolated diazotrophs to humin. The reduced humin increased the acetylene reduction activity of the diazotrophs by 194–916% compared to the level achieved by the organic carbon source, causing adenosine triphosphate (ATP) synthesis in the diazotroph cells without increase in the CO2 production and direct electron donation to the MoFe protein of the nitrogenase in the cells without relying on the biological electron transfer system. These would result in BNF promotion in the wild-type diazotroph cells beyond their biochemical capacity. This significant promotion of BNF with humin would serve as a potential basis for sustainable technology for greener nitrogen fixation.
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Affiliation(s)
- Sujan Dey
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Nagoya University, Nagoya, Japan
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya, Japan
| | - Takuya Kasai
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Nagoya University, Nagoya, Japan
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya, Japan
| | - Arata Katayama
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Nagoya University, Nagoya, Japan
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya, Japan
- *Correspondence: Arata Katayama
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Dey S, Kasai T, Katayama A. Promotion of biological H 2 (Bio-H 2) production by the nitrogen-fixing anaerobic microbial consortia using humin, a solid-phase humic substance. J Biosci Bioeng 2022; 134:144-152. [PMID: 35644797 DOI: 10.1016/j.jbiosc.2022.04.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 04/23/2022] [Accepted: 04/29/2022] [Indexed: 11/30/2022]
Abstract
Dark fermentative biological hydrogen (Bio-H2) production is expected to be a clean and sustainable H2 production technology, and the technologies have been studied to increase in the product yield as index. This study achieved high product yields of Bio-H2 using nitrogen-fixing consortia under nitrogen-deficient conditions with glucose or mannitol as substrate and humin as the extracellular electron mediator: 4.12 mol-H2/mol-glucose and 3.12 mol-H2/mol-mannitol. The high Bio-H2 production was observed under the conditions where both nitrogenase and hydrogenase were active in the presence of humin. Nitrogenase activity was confirmed by acetylene reduction activity and hydrogenase activity by Bio-H2 production under nitrogenase-inhibiting conditions with NH4NO3. [Fe-Fe] hydrogenase detected by a specific PCR and acetate, butyrate, formate, lactate, and pyruvate produced as by-products suggested the involvement of both pyruvate-ferredoxin-oxidoreductase and pyruvate formate lyase pathways in Bio-H2 production. Humin promoted the Bio-H2 production beyond the capacity of the consortium, which had reached saturation with the optimum concentrations of glucose and mannitol. Carbon balance suggested the concurrent H2 consumption by hydrogenotrophic methanogenesis and acetogenesis. Bio-H2 production of the washed and starved consortium with reduced humin under conditions with or without NH4NO3 suggests that humin promoted hydrogenase and nitrogenase activity by donating extracellular electrons. Clostridium and Ruminococcus in the consortia were considered major hydrogen producers. Thus, this study demonstrated the outstanding potential of nitrogen-fixing consortia under nitrogen-deficient conditions with humin as an extracellular electron mediator for dark fermentative Bio-H2 production with high yields.
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Affiliation(s)
- Sujan Dey
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan; Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan
| | - Takuya Kasai
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan; Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan
| | - Arata Katayama
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan; Institute of Materials and Systems for Sustainability, Nagoya University, Tokai National Higher Education and Research System, Chikusa, Nagoya 464-8603, Japan.
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6
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Pham DM, Dey S, Katayama A. Activation of extracellular electron network in non-electroactive bacteria by Bombyx mori silk. Int J Biol Macromol 2022; 195:1-11. [PMID: 34871655 DOI: 10.1016/j.ijbiomac.2021.11.190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 11/18/2021] [Accepted: 11/27/2021] [Indexed: 11/05/2022]
Abstract
Extracellular electron transfer material (EETM) has increasingly attracted attentions for the enhancing effect on multiple microbial reactions. Especially, EETM is known to be essential to activate the energy network in non-electroactive bacteria. It is motivated to find out an EETM which is natural-based, environmentally friendly, and easily produced at large-scale. In this study, Bombyx mori silk is found, for the first time, to function as an EETM by using an EETM-dependent pentachlorophenol (PCP) dechlorinating anaerobic microbial culture. Subsequently, by dividing fibroin fiber into different soluble/insoluble fractions and correlating their EET functions with their structural properties based on various spectroscopic analyses, the β-sheet configuration is suggested as an essential structure supporting the EET function of silk materials. The analyses also suggested the involvement of sulfur-containing amino acids in this function. The EET function is not degraded by boiling or acid/alkaline treatments and the material can be utilized multiple times, although it is susceptible to UV irradiation. Bombyx mori silk also enhance other microbial reactions, including Fe(III)OOH reduction, CO2 reduction to acetate, and nitrogen fixation. This discovery provides a basis for developing biotechnology for environmental remediation, global warming reduction, and biofertilizer production using Bombyx mori silk and its wastes.
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Affiliation(s)
- Duyen M Pham
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8603, Japan.
| | - Sujan Dey
- Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan
| | - Arata Katayama
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8603, Japan; Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan.
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Liu Z, Yin B. Alterations in the Gut Microbial Composition and Diversity of Tibetan Sheep Infected With Echinococcus granulosus. Front Vet Sci 2022; 8:778789. [PMID: 35097041 PMCID: PMC8792969 DOI: 10.3389/fvets.2021.778789] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 12/02/2021] [Indexed: 12/14/2022] Open
Abstract
Hydatidosis/cystic echinococcosis (CE) caused by Echinococcus granulosus is a parasitic zoonotic disease worldwide, threatening animal health and production and public health safety. However, it is still unclear that whether E. granulosus infection can result in the alteration of gut microbiota in Tibetan sheep. Therefore, a study was designed to investigate the influences of E. granulosus infection on gut microbiota of Tibetan sheep. A total of 10 ovine small intestinal contents (five from healthy and five from infected) were obtained and subjected to high-throughput sequencing by MiSeq platform. A total of 2,395,641 sequences and 585 operational taxonomic units (OTUs) were identified. Firmicutes and Proteobacteria were the most dominant phyla in all samples. Moreover, the proportions of Armatimonadetes and Firmicutes in the infected Tibetan sheep were significantly decreased, whereas Actinobacteria, Chloroflexi, and Acidobacteria had significantly increased. At the genus level, the Christensenellaceae_R-7_group and Ruminococcaceae_NK4A214_group were the predominant bacterial genera in all the samples. Furthermore, the healthy Tibetan sheep exhibited higher abundances of Intestinimonas, Butyrivibrio, Pseudobutyrivibrio, Ruminococcaceae, Eubacterium_coprostanoligenes_group, Oxobacter, Prevotella_1, Ruminiclostridium_6, Coprococcus_1, Ruminococcus, Lachnospiraceae_UCG-002, Olsenella, and Acetitomaculum, whereas Kocuria, Clostridium_sensu_stricto_1, Slackia, Achromobacter, and Stenotrophomonas levels were lower. In conclusion, our results conveyed an information that E. granulosus infection may cause an increase in pathogenic bacteria and a decrease in beneficial bacteria. Additionally, a significant dynamical change in gut microbiota could be associated with E. granulosus infection.
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Affiliation(s)
- Zhigang Liu
- College of Life Science, Anqing Normal University, Anqing, China
- Research Center of Aquatic Organism Conservation and Water Ecosystem Restoration in Anhui Province, Anqing Normal University, Anqing, China
- *Correspondence: Zhigang Liu
| | - Baishuang Yin
- Jilin Agricultural Science and Technology University, Key Lab of Preventive Veterinary Medicine in Jilin Province, Jilin, China
- Baishuang Yin
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Wang Y, Fu Y, He Y, Kulyar MFEA, Iqbal M, Li K, Liu J. Longitudinal Characterization of the Gut Bacterial and Fungal Communities in Yaks. J Fungi (Basel) 2021; 7:jof7070559. [PMID: 34356938 PMCID: PMC8304987 DOI: 10.3390/jof7070559] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 06/28/2021] [Accepted: 07/08/2021] [Indexed: 12/12/2022] Open
Abstract
Development phases are important in maturing immune systems, intestinal functions, and metabolism for the construction, structure, and diversity of microbiome in the intestine during the entire life. Characterizing the gut microbiota colonization and succession based on age-dependent effects might be crucial if a microbiota-based therapeutic or disease prevention strategy is adopted. The purpose of this study was to reveal the dynamic distribution of intestinal bacterial and fungal communities across all development stages in yaks. Dynamic changes (a substantial difference) in the structure and composition ratio of the microbial community were observed in yaks that matched the natural aging process from juvenile to natural aging. This study included a significant shift in the abundance and proportion of bacterial phyla (Planctomycetes, Firmicutes, Bacteroidetes, Spirochaetes, Tenericutes, Proteobacteria, and Cyanobacteria) and fungal phyla (Chytridiomycota, Mortierellomycota, Neocallimastigomycota, Ascomycota, and Basidiomycota) across all development stages in yaks. As yaks grew older, variation reduced, and diversity increased as compared to young yaks. In addition, the intestine was colonized by a succession of microbiomes that coalesced into a more mature adult, including Ruminococcaceae_UCG-005, Romboutsia, Prevotellaceae_UCG-004, Blautia, Clostridium_sensu_stricto_1, Ruminococcus_1, Ruminiclostridium_5, Rikenellaceae_RC9_gut_group, Alloprevotella, Acetitomaculum, Lachnospiraceae_NK3A20_group, Bacteroides, Treponema_2, Olsenella, Escherichia-Shigella, Candidatus_Saccharimonas, and fungal communities Mortierella, Lomentospora, Orpinomyces, and Saccharomyces. In addition, microorganisms that threaten health, such as Escherichia-Shigella, Mortierella, Lomentospora and Hydrogenoanaerobacterium, Corynebacterium_1, Trichosporon, and Coprinellus, were enriched in young and old yaks, respectively, although all yaks were healthy. The significant shifts in microflora composition and structure might reflect adaptation of gut microbiome, which is associated with physicochemical conditions changes and substrate availability in the gut across all development periods of yaks.
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Affiliation(s)
- Yaping Wang
- Institute of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China;
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (Y.F.); (Y.H.); (M.F.-e.-A.K.); (M.I.)
| | - Yuhang Fu
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (Y.F.); (Y.H.); (M.F.-e.-A.K.); (M.I.)
| | - Yuanyuan He
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (Y.F.); (Y.H.); (M.F.-e.-A.K.); (M.I.)
| | - Muhammad Fakhar-e-Alam Kulyar
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (Y.F.); (Y.H.); (M.F.-e.-A.K.); (M.I.)
| | - Mudassar Iqbal
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (Y.F.); (Y.H.); (M.F.-e.-A.K.); (M.I.)
- Faculty of Veterinary and Animal Sciences, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan
| | - Kun Li
- Institute of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China;
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
- Correspondence: (K.L.); (J.L.)
| | - Jiaguo Liu
- Institute of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China;
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
- Correspondence: (K.L.); (J.L.)
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Jia W, Shen D, Yu K, Zhong J, Li Z, Ye Q, Jiang J, Wang W. Reducing the Environmental Risk of Chlorpyrifos Application through Appropriate Agricultural Management: Evidence from Carbon-14 Tracking. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:7324-7333. [PMID: 34167301 DOI: 10.1021/acs.jafc.1c02753] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Chlorpyrifos (CPF) is one of the most critical insecticides in the world. However, many countries are gradually banning its use due to its reported hazardous impacts on humans. This study explored the possibility of reducing the environmental risk of CPF through appropriate agricultural management practices. Results showed that the environmental risk of CPF is lower under drainage conditions because there is more mineralization and less bound residues (BRs) than under submerged conditions. Bioaugmentation significantly enhanced the CPF mineralization and inhibited the formation of CPF-BRs. Biochar adsorbed CPF and thus reduced its bioavailability, but it could not completely eliminate the toxicity of CPF. In addition, bioaugmentation did not significantly affect the native microbial community of CPF-contaminated soil, suggesting its safety in reducing the environmental risk of CPF. The study indicated that the environmental risk of CPF could be reduced by appropriate agricultural management such as water management, bioaugmentation, soil biochar amendment, and selecting suitable soil types.
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Affiliation(s)
- Weibin Jia
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture of PRC and Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Dahang Shen
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture of PRC and Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Kaixiang Yu
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture of PRC and Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Jiayin Zhong
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture of PRC and Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Zheng Li
- Agricultural Products Quality and Safety Center of Zhejiang Province, Hangzhou 310003, China
| | - Qingfu Ye
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture of PRC and Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Jiandong Jiang
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Wei Wang
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture of PRC and Zhejiang Province, Zhejiang University, Hangzhou 310058, China
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Pham DM, Kasai T, Yamaura M, Katayama A. Humin: No longer inactive natural organic matter. CHEMOSPHERE 2021; 269:128697. [PMID: 33139048 DOI: 10.1016/j.chemosphere.2020.128697] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 10/18/2020] [Accepted: 10/19/2020] [Indexed: 06/11/2023]
Abstract
The discovery of the function of humin (HM), an insoluble fraction of humic substances (HSs), as an extracellular electron mediator (EEM) in 2012 has provided insight into the role of HM in nature and its potential for in situ bioremediation of pollutants. The EEM function is thought to enable the energy network of various microorganisms using HM. Recently, a number of studies on the application of HM as EEM in anaerobic microbial cultures have been conducted. Even so, there is a need for developing a holistic view of HM EEM function. In this paper, we summarize all the available information on the properties of HM EEM function, its applications, possible redox-active structures, and the interaction between HM and microbial cells. We also suggest scopes for future HM research.
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Affiliation(s)
- Duyen Minh Pham
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya, 464-8603, Japan
| | - Takuya Kasai
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya, 464-8603, Japan; Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya, 464-8603, Japan
| | - Mirai Yamaura
- Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya, 464-8603, Japan
| | - Arata Katayama
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya, 464-8603, Japan; Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya, 464-8603, Japan.
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11
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Dey S, Awata T, Mitsushita J, Zhang D, Kasai T, Matsuura N, Katayama A. Promotion of biological nitrogen fixation activity of an anaerobic consortium using humin as an extracellular electron mediator. Sci Rep 2021; 11:6567. [PMID: 33753787 PMCID: PMC7985497 DOI: 10.1038/s41598-021-85955-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 03/05/2021] [Indexed: 11/09/2022] Open
Abstract
Nitrogen fertiliser is manufactured using the industrial Haber–Bosch process, although it is extremely energy-consuming. One sustainable alternative technology is the electrochemical promotion of biological nitrogen fixation (BNF). This study reports the promotion of BNF activity of anaerobic microbial consortia by humin, a solid-phase humic substance, at any pH, functioning as an extracellular electron mediator, to levels of 5.7–11.8 times under nitrogen-deficient conditions. This was evidenced by increased acetylene reduction activity and total nitrogen content of the consortia. Various humins from different origins promoted anaerobic BNF activity, although the degree of promotion differed. The promotion effected by humin differed from the effects of chemical reducing agents and the effects of supplemental micronutrients and vitamins. The promotion of anaerobic BNF activity by only reduced humin without any other electron donor suggested that humin did not serve as organic carbon source but as extracellular electron mediator, for electron donation to the nitrogen-fixing microorganisms. The next generation sequencing (NGS) of partial 16S rRNA genes showed the predominance of Clostridiales (Firmicutes) in the consortia. These findings suggest the effectiveness of humin as a solid-phase extracellular electron mediator for the promotion of anaerobic BNF activity, potentially to serve for the basis for a sustainable technology.
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Affiliation(s)
- Sujan Dey
- Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan
| | - Takanori Awata
- National Institute for Land and Infrastructure Management, Asahi 1, Tsukuba, Ibaraki, 305-0804, Japan
| | - Jumpei Mitsushita
- Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan
| | - Dongdong Zhang
- Institute of Materials and Systems for Sustainability, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan.,Ocean College, Zhejiang University, Zhoushan, 316021, China
| | - Takuya Kasai
- Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan.,Institute of Materials and Systems for Sustainability, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan
| | - Norihisa Matsuura
- School of Geosciences and Civil Engineering, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa, 920-1192, Japan
| | - Arata Katayama
- Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan. .,Institute of Materials and Systems for Sustainability, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan.
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Bhatt P, Bhatt K, Sharma A, Zhang W, Mishra S, Chen S. Biotechnological basis of microbial consortia for the removal of pesticides from the environment. Crit Rev Biotechnol 2021; 41:317-338. [PMID: 33730938 DOI: 10.1080/07388551.2020.1853032] [Citation(s) in RCA: 69] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
The application of microbial strains as axenic cultures has frequently been employed in a diverse range of sectors. In the natural environment, microbes exist as multispecies and perform better than monocultures. Cell signaling and communication pathways play a key role in engineering microbial consortia, because in a consortium, the microorganisms communicate via diffusible signal molecules. Mixed microbial cultures have gained little attention due to the lack of proper knowledge about their interactions with each other. Some ideas have been proposed to deal with and study various microbes when they live together as a community, for biotechnological application purposes. In natural environments, microbes can possess unique metabolic features. Therefore, microbial consortia divide the metabolic burden among strains in the group and robustly perform pesticide degradation. Synthetic microbial consortia can perform the desired functions at naturally contaminated sites. Therefore, in this article, special attention is paid to the microbial consortia and their function in the natural environment. This review comprehensively discusses the recent applications of microbial consortia in pesticide degradation and environmental bioremediation. Moreover, the future directions of synthetic consortia have been explored. The review also explores the future perspectives and new platforms for these approaches, besides highlighting the practical understanding of the scientific information behind consortia.
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Affiliation(s)
- Pankaj Bhatt
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Kalpana Bhatt
- Department of Botany and Microbiology, Gurukula Kangri University, Haridwar, Uttarakhand, India
| | - Anita Sharma
- Department of Microbiology, G.B. Pant University of Agriculture and Technology, Pantnagar, Uttarakhand, India
| | - Wenping Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Sandhya Mishra
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shaohua Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
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Chen M, Tong H, Qiao J, Lv Y, Jiang Q, Gao Y, Liu C. Microbial community response to the toxic effect of pentachlorophenol in paddy soil amended with an electron donor and shuttle. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 205:111328. [PMID: 32950805 DOI: 10.1016/j.ecoenv.2020.111328] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 08/21/2020] [Accepted: 09/10/2020] [Indexed: 06/11/2023]
Abstract
Understanding the degradation of pentachlorophenol (PCP) by indigenous microorganisms stimulated by an electron donor and shuttle in paddy soil, and the influences of PCP/electron donor/shuttle on the native microbial community are important for biodegradation and ecological and environmental safety. Previous studies focused on the kinetics and the microbial actions of PCP degradation, however, the effects of toxic and antimicrobial PCP and electron donor/shuttle on the microbial community diversity and composition in paddy soil are poorly understood. In this study, the effects of PCP, an electron donor (lactate), and the electron shuttle (anthraquinone-2, 6-disulfonate, AQDS) on the microbial community in paddy soil were investigated. The results showed that the presence of PCP reduced the microbial diversity compared to the control during PCP degradation, while increased the microbial diversity was observed in response to lactate and AQDS. The addition of PCP stimulated the microorganisms involved in PCP dechlorination, including Clostridium, Desulfitobacterium, Pandoraea, and unclassified Veillonellaceae, which were dormant in raw soil without PCP stress. In all of the treatments with PCP, the addition of lactate or AQDS enhanced PCP dechlorination by stimulating the growth of functional groups involved in PCP dechlorination and by changing the microbial community during dechlorination process. The microbial community tended to be uniform after complete PCP degradation (28 days). However, when lactate and AQDS were present simultaneously in PCP-contaminated soil, lactate acted as a carbon source or electron donor to promote the activities of microbial community, and AQDS changed the redox potential because of the production of reduced AQDS. These findings enhance our understanding of the effect of PCP and a biostimulation method for PCP biodegradation in soil ecosystems at the microbial community level, and suggest the appropriate selection of an electron donor/shuttle for accelerating the bioremediation of PCP-contaminated soils.
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Affiliation(s)
- Manjia Chen
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China
| | - Hui Tong
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China
| | - Jiangtao Qiao
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China
| | - Yahui Lv
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China
| | - Qi Jiang
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China
| | - Yuanxue Gao
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China
| | - Chengshuai Liu
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Science, Guangzhou, 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou, 510650, China; State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang, 550081, China.
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Laskar M, Kasai T, Awata T, Katayama A. Humin Assists Reductive Acetogenesis in Absence of Other External Electron Donor. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17124211. [PMID: 32545640 PMCID: PMC7344539 DOI: 10.3390/ijerph17124211] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 06/05/2020] [Accepted: 06/07/2020] [Indexed: 01/04/2023]
Abstract
The utilization of extracellular electron transfer by microorganism is highly engaging for remediation of toxic pollutants under “energy-starved” conditions. Humin, an organo-mineral complex of soil, has been instrumental as an external electron mediator for suitable electron donors in the remediative works of reductive dehalogenation, denitrification, and so forth. Here, we report, for the first time, that humin assists microbial acetogenesis as the extracellular electron donor using the electron acceptor CO2. Humin was obtained from Kamajima paddy soil, Japan. The anaerobic acetogenic consortium in mineral medium containing CO2/HCO3− as the inorganic carbon source used suspended humin as the energy source under mesophilic dark conditions. Retardation of acetogenesis under the CO2-deficient conditions demonstrated that humin did not function as the organic carbon source but as electron donor in the CO2-reducing acetogenesis. The consortium with humin also achieved anaerobic dechlorination with limited methanogenic activity. Total electron-donating capacity of humin was estimated at about 87 µeeq/g-humin. The metagenomic sequencing of 16S rRNA genes showed the predominance of Firmicutes (71.8 ± 2.5%) in the consortium, and Lachnospiraceae and Ruminococcaceae were considered as the CO2-reducing acetogens in the consortium. Thus, microbial fixation of CO2 using humin introduces new insight to the holistic approach for sustainable treatment of contaminants in environment.
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Affiliation(s)
- Mahasweta Laskar
- Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan; (M.L.); (T.K.)
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8603, Japan
| | - Takuya Kasai
- Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan; (M.L.); (T.K.)
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8603, Japan
| | - Takanori Awata
- National Institute for Land and Infrastructure Management, Tsukuba 305-0804, Japan;
| | - Arata Katayama
- Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan; (M.L.); (T.K.)
- Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8603, Japan
- Correspondence: ; Tel.: +81-(0)52-789-5856
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