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Ma X, Ouyang Z, Luo H, Shang W, Ma H, Zhu M, Dong H, Guo Z, Dong X, Piao F, Shen S, Li X, Wang Y, Zhang T. Bacillus velezensis HR6-1 enhances salt tolerance in tomato by increasing endogenous cytokinin content and improving ROS scavenging. Microbiol Res 2025; 296:128143. [PMID: 40117839 DOI: 10.1016/j.micres.2025.128143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2025] [Accepted: 03/13/2025] [Indexed: 03/23/2025]
Abstract
The application of plant growth-promoting rhizobacteria (PGRP) is a promising and innovative strategy for alleviating salt stress in plants. However, the mechanism underlying PGRP-mediated alleviation of salt stress is currently unclear. In this study, we observed that the tomatoes inoculated with Bacillus velezensis HR6-1 exhibited better growth indicators and photosynthesis-related parameters than non-colonized tomatoes under salt stress. Physiological analysis showed that tomatoes inoculated with HR6-1 exhibited better Na+/K+ balance and lower ROS accumulation and oxidative damage, and higher activities of antioxidant enzymes compared with non-colonized tomatoes under salt stress. Transcriptome analysis revealed that under salt stress, HR6-1 treatment improved the expression of various transcription factors (especially WRKYs and ERFs) and many genes related to plant hormone signal transduction, the MAPK signaling pathway, the salt overly sensitive pathway, and detoxification in tomatoes. Moreover, HR6-1 inoculation increased the content of cZ- and tZ-type cytokinins in salt-treated tomato seedlings, which was consistent with the high expression of several cytokinin synthesis genes. Treatment with a cytokinin synthesis inhibitor prevented HR6-1-mediated improvement in salt tolerance in tomato seedlings, implying that HR6-1 stimulates cytokinin synthesis to enhance tomato resistance to salt stress. Our findings identify a potential biostimulant for improving tomato growth under salt stress and deepen our understanding of PGPR-mediated salinity alleviation in tomato seedlings.
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Affiliation(s)
- Xiaojing Ma
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Zhaopeng Ouyang
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Hengbin Luo
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Wenkai Shang
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Haohao Ma
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Mengmeng Zhu
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Han Dong
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Zhixin Guo
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Xiaoxing Dong
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Fengzhi Piao
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Shunshan Shen
- College of Plant Protection, Henan Agricultural University, Zhengzhou, China
| | - Xinzheng Li
- College of Horticulture and Landscape, Henan Institute of Science and Technology, Xinxiang, China
| | - Yong Wang
- College of Horticulture, Henan Agricultural University, Zhengzhou, China.
| | - Tao Zhang
- College of Horticulture, Henan Agricultural University, Zhengzhou, China.
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Zhou M, Di Q, Yan Y, He C, Wang J, Li Y, Yu X, Sun M. Multi-omics reveal the molecular mechanisms of Sodium Nitrophenolate in enhancing cold tolerance through hormonal and antioxidant pathways in cucumber. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 223:109836. [PMID: 40157145 DOI: 10.1016/j.plaphy.2025.109836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2024] [Revised: 03/11/2025] [Accepted: 03/25/2025] [Indexed: 04/01/2025]
Abstract
Sodium nitrophenate (CSN) enhanced cold tolerance of cucumber. However, at the omics-level, the molecular mechanism of CSN to cold stress remains unclear. Here, we found that CSN was comparable to abscisic acid and much stronger than 2, 4-epibrassinolide (EBR) in enhancing cold tolerance. RNA-seq indicated that CSN regulated the brassinolides (BR) and cytokinin (CK) synthesis in the late stage of cold stress (LS-CS). CSN reduced the source of BR synthesis, accelerated the conversion of intermediate substances to BR and the deactivation of BR. While, CSN accelerated CK synthesis and CK deactivation by cytokinin dehydrogenase. Hormone content determination showed that CSN increased BR and decreased CK contents during most time-points of cold stress. Kinds of hormone signaling genes at LS-CS were activated by CSN, which may be due to changes in BR and CK contents. CSN also enhanced the expression of 90 % phenylalanine ammonia-lyase genes, participated in phenylpropanoid biosynthesis, at LS-CS. Genes of phenylpropanoid biosynthesis pathway and hormones signal were co-expression during cold stress. The metabolome also showed that CSN participated phenylpropanoid biosynthesis at LS-CS too. However, as for lipid metabolome, CSN up-regulated anthocyanin, flavones and flavonols metabolism at the early stage of cold stress. The autumn and winter field yield test showed that CSN increase cucumber yield by approximately 17.67 % and economic income by 207.67 dollars/667 m2. Collectedly, CSN may regulate lipid metabolism and hormone signaling mediated antioxidant pathways to enhance cold tolerance in the early and late stages of cold stress, respectively.
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Affiliation(s)
- Mengdi Zhou
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China
| | - Qinghua Di
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China
| | - Yan Yan
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China
| | - Chaoxing He
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China
| | - Jun Wang
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China
| | - Yansu Li
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China.
| | - Xianchang Yu
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China.
| | - Mintao Sun
- State Key Laboratory of Vegetable Biobreeding, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Haidian District, Zhongguancun South St, Beijing, 100081, China.
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Savelieva EM, Arkhipov DV, Kozinova AV, Romanov GA, Lomin SN. Non-Canonical Inter-Protein Interactions of Key Proteins Belonging to Cytokinin Signaling Pathways. PLANTS (BASEL, SWITZERLAND) 2025; 14:1485. [PMID: 40431050 PMCID: PMC12115143 DOI: 10.3390/plants14101485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2025] [Revised: 05/07/2025] [Accepted: 05/08/2025] [Indexed: 05/29/2025]
Abstract
The multistep phosphorelay (MSP) is a conserved signaling system that allows plants to sense and respond to a variety of cues under rapidly changing environmental conditions. The MSP system comprises three main protein types: sensor histidine kinases, phosphotransmitters, and response regulators. There are numerous signaling pathways that use, in whole or in part, this set of proteins to transduce diverse signals. Among them, the cytokinin signal transduction system is the best-studied pathway, which utilizes the entire MSP cascade. Focusing on this system, we review here protein-protein interaction of MSP components that are not directly related to cytokinin signaling. These interactions are likely to play an essential role in hormonal crosstalk and may be promising targets for fine-tuning plant development. In addition, in light of recent advances in the study of cytokinin signaling, we discuss new insights into the putative molecular mechanisms that mediate the pleiotropic action of cytokinins and provide specificity for distinct MSP signals. A detailed network of known non-canonical protein-protein interactions related to cytokinin signaling was demonstrated.
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Affiliation(s)
| | | | | | | | - Sergey N. Lomin
- Timiryazev Institute of Plant Physiology of the Russian Academy of Sciences, Moscow 127276, Russia; (E.M.S.); (A.V.K.)
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Davarpanah SJ, Maali-Amiri R, Parastouei K. Effect of low temperature acclimation on developmental regulation of redox responses and phytohormones metabolism in lines of crosses between spring and winter wheat. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 222:109740. [PMID: 40090075 DOI: 10.1016/j.plaphy.2025.109740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2025] [Accepted: 03/03/2025] [Indexed: 03/18/2025]
Abstract
Low temperature (LT) acclimation in winter wheat (Triticum aestivum L.) was related to developmental regulation of transcriptome and metabolome for balancing growth and responses. In this study, six wheat lines from the F8 generation, derived from crosses between spring wheat (Pishtaz) and winter wheat (Claire) with distinct growth habits (based on the Vrn-1 loci) were planted under field conditions. The final leaf number (FLN) and double ridge (DR) formation showed that genotypes without vernalization requirement, including Pishtaz parent, and lines 8041 and 8044 transitioned rapidly into the reproductive stage. They also had lower LT tolerance, antioxidants activity and abscisic acid (ABA) content among genotypes. In these genotypes, cytokinin (CK) and gibberellin (GA3) contents and expression levels of gibberellin 20 oxidase (GA20ox) and gibberellin 3 oxidase (GA3ox) genes, were more active than other genotypes. Facultative lines 8020 and 8025 had higher antioxidants activity and lower hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents compared to spring types. Winter genotypes, including Claire parent, lines 8011 and 8015 had a strong vernalization requirement resulted in prolonged vegetative phase, accompanied by increased LT tolerance, antioxidants activity and expression of ABA biosynthetic genes, confirming that the duration of the vegetative phase plays a key role in determining wheat's winter survival capacity. Higher LT tolerance was effectively related to retarded reproductive phase, minimized redox damages through co-regulating phytohormone-metabolites under developmental periods in winter wheat.
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Affiliation(s)
- Seyed Javad Davarpanah
- Applied Biotechnology Research Center, Baqiyatallah University of Medical Sciences, Tehran, Iran
| | - Reza Maali-Amiri
- Department of Agronomy and Plant Breeding, College of Agriculture and Natural Resources, University of Tehran, Karaj, 31587-77871, Iran.
| | - Karim Parastouei
- Health Research Center, Life Style Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
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Mughal N, Wu X, He Y, Shoaib N, Chen J, Li Y, Fu M, Li X, He Y, Yang W, Liu J. Trans-zeatin modulates shade stress adaptation in soybean through transcription associated metabolic network. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 222:109686. [PMID: 40043461 DOI: 10.1016/j.plaphy.2025.109686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2024] [Revised: 02/12/2025] [Accepted: 02/21/2025] [Indexed: 05/07/2025]
Abstract
This study explores the molecular mechanisms by which trans-zeatin (tZ), a cytokinin, influences shade stress responses in shade-sensitive and shade-tolerant recombinant inbred lines (RILs) 160 and 165 of soybean (Glycine max) under varied light conditions. Using an integrative multi-omics approach combining metabolomics and transcriptomics, we elucidate the regulatory networks underlying soybean adaptation to shade stress. Using an integrative multi-omics approach that combines metabolomics and transcriptomics, we dissect the complex regulatory networks that enable soybean plants to adapt to shade stress. Our results demonstrate that tZ significantly affects growth, biomass accumulation, photosynthetic efficiency, and yield in soybean plants. Metabolomic analysis revealed that shade stress impacts key metabolic pathways, including phenylpropanoids, flavonoids, flavone and flavonol, anthocyanin, and brassinosteroid biosynthesis, with tZ treatment enhances the adaptive responses of soybean plants. Transcriptomic data further identified differential gene expression in these pathways, alongside those related to hormone-mediated signaling pathway, cell wall biogenesis, and defence response pathways underlining the molecular adjustments to tZ and shade stress. Importantly, the integration of metabolomics and transcriptomics data revealed key KEGG pathways and genes regulated by tZ treatment in RIL 160 under shade stress, including significant alterations in phenylpropanoids, flavonoids, hormone-mediated signaling pathway, cell wall biogenesis and defence response, anthocyanin biosynthesis, and fatty acid degradation pathways as well key responsive transcription factors. This study provides insights into the role of tZ in mediating soybean responses to shade stress at the molecular level, offering insights into improving soybean resilience to low light conditions and informing future agricultural practices for optimizing crop yield.
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Affiliation(s)
- Nishbah Mughal
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China; Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Xiaoling Wu
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Yuhong He
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Noman Shoaib
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Jianhua Chen
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Yang Li
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Man Fu
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Xingyun Li
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Yuanyuan He
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China
| | - Wenyu Yang
- Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China.
| | - Jiang Liu
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China; Sichuan Engineering Research Center for Crop Strip Intercropping System/Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Chengdu 611130, China.
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6
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Shamloo-Dashtpagerdi R, Lindlöf A, Aliakbari M. The CGA1-SNAT regulatory module potentially contributes to cytokinin-mediated melatonin biosynthesis and drought tolerance in wheat. BMC PLANT BIOLOGY 2025; 25:296. [PMID: 40050781 PMCID: PMC11887191 DOI: 10.1186/s12870-025-06313-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Accepted: 02/26/2025] [Indexed: 03/09/2025]
Abstract
BACKGROUND Melatonin plays a pivotal role in alleviating abiotic stresses, yet its biosynthesis regulation in crops, particularly wheat, remains unclear. This study explores regulatory components of melatonin biosynthesis under drought stress using bioinformatic, physiochemical, and molecular approaches in contrasting wheat genotypes. RESULTS Bioinformatic analysis identified SNAT, a key melatonin biosynthesis gene, and 88 transcription factors (TFs) from 26 families as potential regulators. The regulatory network for SNAT highlighted CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1) as a significant TF. Under drought stress, contrasting wheat genotypes exhibited distinct CGA1-SNAT module expression, melatonin and cytokinin levels, photosynthetic activity, and oxidative damage. Cytokinin treatments regulated the CGA1-SNAT module, altering melatonin content, SPAD values, and chloroplast numbers, particularly in drought-susceptible genotypes. CONCLUSIONS This study uncovers the pivotal role of the CGA1-SNAT module and its interaction with the cytokinin pathway in regulating melatonin biosynthesis during drought stress. These findings enhance our understanding of the molecular mechanisms underpinning drought tolerance and offer promising targets for genetic and biochemical interventions to improve crop resilience.
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Affiliation(s)
| | | | - Massume Aliakbari
- Department of Crop Production and Plant Breeding, Shiraz University, Shiraz, Iran
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Kumar P, Pandey S, Pati PK. Interaction between pathogenesis-related (PR) proteins and phytohormone signaling pathways in conferring disease tolerance in plants. PHYSIOLOGIA PLANTARUM 2025; 177:e70174. [PMID: 40134362 DOI: 10.1111/ppl.70174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 02/25/2025] [Accepted: 03/02/2025] [Indexed: 03/27/2025]
Abstract
Pathogenesis-related (PR) proteins are critical defense signaling molecules induced by phytopathogens. They play a vital role in plant's defense signaling pathways and innate immunity, particularly in systemic acquired resistance (SAR) and serve as key molecular markers of plant defense. Overexpressing PR genes, such as chitinase, thaumatin, glucanase, thionin and defensin, either individually or in combination, have significantly boosted plants' defense responses against various pathogens. However, signaling pathways regulating the expression of these versatile proteins remain only partially understood. Plant hormones like salicylic acid (SA) and jasmonic acid (JA) are known for their well-established roles in regulating PR gene responses to pathogens and other stress conditions. PR genes interact with various components of hormonal signaling pathways, including receptors (e.g., NPR1 in SA signaling), transcription factors (e.g., MYC2 in JA signaling), and cis-regulating elements (e.g., W-box), to modulate plant defense responses. Recent studies have highlighted the contributions of different plant hormones to plant immunity and their interactions with PR proteins in a process known as hormonal crosstalk, which helps coordinate immunity activation. This review provides a comprehensive overview of the PR proteins, their complexity, and hormonal crosstalk in immunity, aiming to understand these interactions for improved pathogen resistance.
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Affiliation(s)
- Paramdeep Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur, HP, India
| | - Saurabh Pandey
- Department of Molecular Biology and Biotechnology, Indira Gandhi Krishi Vishwavidyalaya, Raipur, Chhattisgarh, India
| | - Pratap Kumar Pati
- Department of Biotechnology, Guru Nanak Dev University, Amritsar, Punjab, India
- Department of Agriculture, Guru Nanak Dev University, Amritsar, Punjab, India
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8
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Aydin A, Yerlikaya BA, Yerlikaya S, Yilmaz NN, Kavas M. CRISPR-mediated mutation of cytokinin signaling genes (SlHP2 and SlHP3) in tomato: Morphological, physiological, and molecular characterization. THE PLANT GENOME 2025; 18:e20542. [PMID: 39779650 PMCID: PMC11711121 DOI: 10.1002/tpg2.20542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 11/08/2024] [Accepted: 11/12/2024] [Indexed: 01/11/2025]
Abstract
Synergistic and antagonistic relationships between cytokinins and other plant growth regulators are important in response to changing environmental conditions. Our study aimed to determine the functions of SlHP2 and SlHP3, two members of cytokinin signaling in tomato, in drought stress response using CRISPR/Cas9-mediated mutagenesis. Ten distinct genome-edited lines were generated via Agrobacterium tumefaciens-mediated gene transfer and confirmed through Sanger sequencing. Stress experiments were conducted with two of these lines (slhp2,3-10 and slhp2,3-11), which harbored homozygous mutations in both genes. The responses of two lines carrying homozygous mutations in both genes under polyethylene glycol (PEG)-induced stress were examined using morphological, physiological, biochemical, and molecular methods. The genome-edited lines demonstrated enhanced water retention, reduced stomatal density, and less oxidative damage compared to the wild-type plants under PEG-induced stress. Moreover, the slhp2,3 double mutant plants exhibited improved root growth, showcasing their superior drought tolerance over wild-type plants by accessing deeper water sources and maintaining hydration in water-limited environments. To investigate the involvement of cytokinin signaling regulators and genes associated with stomatal formation and differentiation, the expression of genes (Speechless [SPCH], FAMA, MUTE, TMM, HB25, HB31, RR6, RR7, and Solyc02g080860) was assessed. The results revealed that all regulators were downregulated, with SPCH, TMM, RR7, and RR6 showing significant reductions under PEG-induced stress. These results emphasize the promise of utilizing CRISPR/Cas9 to target cytokinin signaling pathways, enhancing drought tolerance in tomatoes through improvements in water retention and root growth, along with a reduction in stomatal density and malondialdehyde content.
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Affiliation(s)
- Abdullah Aydin
- Department of Agricultural Biotechnology, Faculty of AgricultureOndokuz Mayis UniversitySamsunTurkey
| | - Bayram Ali Yerlikaya
- Department of Agricultural Biotechnology, Faculty of AgricultureOndokuz Mayis UniversitySamsunTurkey
| | - Seher Yerlikaya
- Department of Agricultural Biotechnology, Faculty of AgricultureOndokuz Mayis UniversitySamsunTurkey
| | - Nisa Nur Yilmaz
- Department of Agricultural Biotechnology, Faculty of AgricultureOndokuz Mayis UniversitySamsunTurkey
| | - Musa Kavas
- Department of Agricultural Biotechnology, Faculty of AgricultureOndokuz Mayis UniversitySamsunTurkey
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Senizza B, Araniti F, Lewin S, Wende S, Kolb S, Lucini L. A multi-omics approach to unravel the interaction between heat and drought stress in the Arabidopsis thaliana holobiont. FRONTIERS IN PLANT SCIENCE 2024; 15:1484251. [PMID: 39748821 PMCID: PMC11693709 DOI: 10.3389/fpls.2024.1484251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Accepted: 11/28/2024] [Indexed: 01/04/2025]
Abstract
The impact of combined heat and drought stress was investigated in Arabidopsis thaliana and compared to individual stresses to reveal additive effects and interactions. A combination of plant metabolomics and root and rhizosphere bacterial metabarcoding were used to unravel effects at the plant holobiont level. Hierarchical cluster analysis of metabolomics signatures pointed out two main clusters, one including heat and combined heat and drought, and the second cluster that included the control and drought treatments. Overall, phenylpropanoids and nitrogen-containing compounds, hormones and amino acids showed the highest discriminant potential. A decrease in alpha-diversity of Bacteria was observed upon stress, with stress-dependent differences in bacterial microbiota composition. The shift in beta-diversity highlighted the pivotal enrichment of Proteobacteria, including Rhizobiales, Enterobacteriales and Azospirillales. The results corroborate the concept of stress interaction, where the combined heat and drought stress is not the mere combination of the single stresses. Intriguingly, multi-omics interpretations evidenced a good correlation between root metabolomics and root bacterial microbiota, indicating an orchestrated modulation of the whole holobiont.
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Affiliation(s)
- Biancamaria Senizza
- Department for Sustainable Food Process, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Fabrizio Araniti
- Dipartimento di Scienze Agrarie e Ambientali, Produzione, Territorio, Agroenergia (Di.S.A.A.), Università degli Studi di Milano, Milano, Italy
| | - Simon Lewin
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research – Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Muencheberg, Germany
| | - Sonja Wende
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research – Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Muencheberg, Germany
| | - Steffen Kolb
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research – Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Muencheberg, Germany
- Thaer Institute, Faculty of Life Sciences, Humboldt University of Berlin, Berlin, Germany
| | - Luigi Lucini
- Department for Sustainable Food Process, Università Cattolica del Sacro Cuore, Piacenza, Italy
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10
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Arkhipov A, Shao Z, Muirhead SR, Harry MS, Batool M, Mirzaee H, Carvalhais LC, Schenk PM. Microbe-Friendly Plants Enable Beneficial Interactions with Soil Rhizosphere Bacteria by Lowering Their Defense Responses. PLANTS (BASEL, SWITZERLAND) 2024; 13:3065. [PMID: 39519980 PMCID: PMC11548416 DOI: 10.3390/plants13213065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2024] [Revised: 10/26/2024] [Accepted: 10/28/2024] [Indexed: 11/16/2024]
Abstract
The use of plant growth-promoting rhizobacteria presents a promising addition to conventional mineral fertilizer use and an alternative strategy for sustainable agricultural crop production. However, genotypic variations in the plant host may result in variability of the beneficial effects from these plant-microbe interactions. This study examined growth promotion effects of commercial vegetable crop cultivars of tomato, cucumber and broccoli following application with five rhizosphere bacteria. Biochemical assays revealed that the bacterial strains used possess several nutrient acquisition traits that benefit plants, including nitrogen fixation, phosphate solubilization, biofilm formation, and indole-3-acetic acid (IAA) production. However, different host cultivars displayed genotype-specific responses from the inoculations, resulting in significant (p < 0.05) plant growth promotion in some cultivars but insignificant (p > 0.05) or no growth promotion in others. Gene expression profiling in tomato cultivars revealed that these cultivar-specific phenotypes are reflected in differential expressions of defense and nutrient acquisition genes, suggesting that plants can be categorized into "microbe-friendly" cultivars (with little or no defense responses against beneficial microbes) and "microbe-hostile" cultivars (with strong defense responses). These results validate the notion that "microbe-friendly" (positive interaction with rhizosphere microbes) should be considered an important trait in breeding programs when developing new cultivars which could result in improved crop yields.
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Affiliation(s)
- Alexander Arkhipov
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
| | - Ziyu Shao
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
| | - Sean R. Muirhead
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
| | - Muchineripi S. Harry
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
| | - Maria Batool
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
| | - Hooman Mirzaee
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
| | - Lilia C. Carvalhais
- Center for Horticultural Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Ecosciences Precinct, Brisbane, QLD 4072, Australia;
| | - Peer M. Schenk
- Plant-Microbe Interactions Laboratory, School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia; (A.A.); (Z.S.); (S.R.M.); (M.S.H.); (M.B.); (H.M.)
- Sustainable Solutions Hub, Global Sustainable Solutions Pty Ltd., Brisbane, QLD 4105, Australia
- Centre for Bioinnovation, The University of the Sunshine Coast, Sippy Downs, QLD 4556, Australia
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11
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Mughal N, Shoaib N, Chen J, Li Y, He Y, Fu M, Li X, He Y, Guo J, Deng J, Yang W, Liu J. Adaptive roles of cytokinins in enhancing plant resilience and yield against environmental stressors. CHEMOSPHERE 2024; 364:143189. [PMID: 39191348 DOI: 10.1016/j.chemosphere.2024.143189] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 08/03/2024] [Accepted: 08/24/2024] [Indexed: 08/29/2024]
Abstract
Innovative agricultural strategies are essential for addressing the urgent challenge of food security in light of climate change, population growth, and various environmental stressors. Cytokinins (CKs) play a pivotal role in enhancing plant resilience and productivity. These compounds, which include isoprenoid and aromatic types, are synthesized through pathways involving key enzymes such as isopentenyl transferase and cytokinin oxidase. Under abiotic stress conditions, CKs regulate critical physiological processes by improving photosynthetic efficiency, enhancing antioxidant enzyme activity, and optimizing root architecture. They also reduce the levels of reactive oxygen species and malondialdehyde, resulting in improved plant performance and yield. CKs interact intricately with other phytohormones, including abscisic acid, ethylene, salicylic acid, and jasmonic acid, to modulate stress-responsive pathways. This hormonal cross-talk is vital for finely tuning plant responses to stress. Additionally, CKs influence nutrient uptake and enhance responses to heavy metal stress, thereby bolstering overall plant resilience. The application of CKs helps plants maintain higher chlorophyll levels, boost antioxidant systems, and promote root and shoot growth. The strategic utilization of CKs presents an adaptive approach for developing robust crops capable of withstanding diverse environmental stressors, thus contributing to sustainable agricultural practices and global food security. Ongoing research into the mechanisms of CK action and their interactions with other hormones is essential for maximizing their agricultural potential. This underscores the necessity for continued innovation and research in agricultural practices, in alignment with global goals of sustainable productivity and food security.
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Affiliation(s)
- Nishbah Mughal
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Noman Shoaib
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China; University of Chinese Academy of Sciences, Beijing, 101408, China
| | - Jianhua Chen
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yang Li
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yuhong He
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Man Fu
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Xingyun Li
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yuanyuan He
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jinya Guo
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Juncai Deng
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Wenyu Yang
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jiang Liu
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture and Rural Affairs, Sichuan Agricultural University, Chengdu, 611130, China; College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
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12
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Acharya BR, Gill SP, Kaundal A, Sandhu D. Strategies for combating plant salinity stress: the potential of plant growth-promoting microorganisms. FRONTIERS IN PLANT SCIENCE 2024; 15:1406913. [PMID: 39077513 PMCID: PMC11284086 DOI: 10.3389/fpls.2024.1406913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 06/24/2024] [Indexed: 07/31/2024]
Abstract
Global climate change and the decreasing availability of high-quality water lead to an increase in the salinization of agricultural lands. This rising salinity represents a significant abiotic stressor that detrimentally influences plant physiology and gene expression. Consequently, critical processes such as seed germination, growth, development, and yield are adversely affected. Salinity severely impacts crop yields, given that many crop plants are sensitive to salt stress. Plant growth-promoting microorganisms (PGPMs) in the rhizosphere or the rhizoplane of plants are considered the "second genome" of plants as they contribute significantly to improving the plant growth and fitness of plants under normal conditions and when plants are under stress such as salinity. PGPMs are crucial in assisting plants to navigate the harsh conditions imposed by salt stress. By enhancing water and nutrient absorption, which is often hampered by high salinity, these microorganisms significantly improve plant resilience. They bolster the plant's defenses by increasing the production of osmoprotectants and antioxidants, mitigating salt-induced damage. Furthermore, PGPMs supply growth-promoting hormones like auxins and gibberellins and reduce levels of the stress hormone ethylene, fostering healthier plant growth. Importantly, they activate genes responsible for maintaining ion balance, a vital aspect of plant survival in saline environments. This review underscores the multifaceted roles of PGPMs in supporting plant life under salt stress, highlighting their value for agriculture in salt-affected areas and their potential impact on global food security.
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Affiliation(s)
- Biswa R. Acharya
- US Salinity Laboratory, USDA-ARS, Riverside, CA, United States
- College of Natural and Agricultural Sciences, University of California Riverside, Riverside, CA, United States
| | - Satwinder Pal Gill
- Plants, Soils, and Climate, College of Agricultural and Applied Sciences, Utah State University, Logan, UT, United States
| | - Amita Kaundal
- Plants, Soils, and Climate, College of Agricultural and Applied Sciences, Utah State University, Logan, UT, United States
| | - Devinder Sandhu
- US Salinity Laboratory, USDA-ARS, Riverside, CA, United States
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13
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Yan Z, Hou J, Leng B, Yao G, Ma C, Sun Y, Zhang F, Mu C, Liu X. Genome-Wide Investigation of the CRF Gene Family in Maize and Functional Analysis of ZmCRF9 in Response to Multiple Abiotic Stresses. Int J Mol Sci 2024; 25:7650. [PMID: 39062894 PMCID: PMC11276700 DOI: 10.3390/ijms25147650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2024] [Revised: 07/08/2024] [Accepted: 07/10/2024] [Indexed: 07/28/2024] Open
Abstract
The cytokinin response factors (CRFs) are pivotal players in regulating plant growth, development, and responses to diverse stresses. Despite their significance, comprehensive information on CRF genes in the primary food crop, maize, remains scarce. In this study, a genome-wide analysis of CRF genes in maize was conducted, resulting in the identification of 12 members. Subsequently, we assessed the chromosomal locations, gene duplication events, evolutionary relationships, conserved motifs, and gene structures of all ZmCRF members. Analysis of ZmCRF promoter regions indicated the presence of cis-regulatory elements associated with plant growth regulation, hormone response, and various abiotic stress responses. The expression patterns of maize CRF genes, presented in heatmaps, exhibited distinctive patterns of tissue specificity and responsiveness to multiple abiotic stresses. qRT-PCR experiments were conducted on six selected genes and confirmed the involvement of ZmCRF genes in the plant's adaptive responses to diverse environmental challenges. In addition, ZmCRF9 was demonstrated to positively regulate cold and salt tolerance. Ultimately, we explored the putative interaction partners of ZmCRF proteins. In summary, this systematic overview and deep investigation of ZmCRF9 provides a solid foundation for further exploration into how these genes contribute to the complex interplay of plant growth, development, and responses to stress.
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Affiliation(s)
- Zhenwei Yan
- Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; (Z.Y.); (B.L.); (G.Y.); (C.M.)
| | - Jing Hou
- School of Agriculture, Ludong University, Yantai 264001, China;
| | - Bingying Leng
- Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; (Z.Y.); (B.L.); (G.Y.); (C.M.)
| | - Guoqi Yao
- Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; (Z.Y.); (B.L.); (G.Y.); (C.M.)
| | - Changle Ma
- College of Life Sciences, Shandong Normal University, Jinan 250300, China;
| | - Yue Sun
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China;
| | - Fajun Zhang
- Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; (Z.Y.); (B.L.); (G.Y.); (C.M.)
| | - Chunhua Mu
- Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; (Z.Y.); (B.L.); (G.Y.); (C.M.)
| | - Xia Liu
- Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China; (Z.Y.); (B.L.); (G.Y.); (C.M.)
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14
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Gan J, Qiu Y, Tao Y, Zhang L, Okita TW, Yan Y, Tian L. RNA-seq analysis reveals transcriptome reprogramming and alternative splicing during early response to salt stress in tomato root. FRONTIERS IN PLANT SCIENCE 2024; 15:1394223. [PMID: 38966147 PMCID: PMC11222332 DOI: 10.3389/fpls.2024.1394223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 05/30/2024] [Indexed: 07/06/2024]
Abstract
Salt stress is one of the dominant abiotic stress conditions that cause severe damage to plant growth and, in turn, limiting crop productivity. It is therefore crucial to understand the molecular mechanism underlying plant root responses to high salinity as such knowledge will aid in efforts to develop salt-tolerant crops. Alternative splicing (AS) of precursor RNA is one of the important RNA processing steps that regulate gene expression and proteome diversity, and, consequently, many physiological and biochemical processes in plants, including responses to abiotic stresses like salt stress. In the current study, we utilized high-throughput RNA-sequencing to analyze the changes in the transcriptome and characterize AS landscape during the early response of tomato root to salt stress. Under salt stress conditions, 10,588 genes were found to be differentially expressed, including those involved in hormone signaling transduction, amino acid metabolism, and cell cycle regulation. More than 700 transcription factors (TFs), including members of the MYB, bHLH, and WRKY families, potentially regulated tomato root response to salt stress. AS events were found to be greatly enhanced under salt stress, where exon skipping was the most prevalent event. There were 3709 genes identified as differentially alternatively spliced (DAS), the most prominent of which were serine/threonine protein kinase, pentatricopeptide repeat (PPR)-containing protein, E3 ubiquitin-protein ligase. More than 100 DEGs were implicated in splicing and spliceosome assembly, which may regulate salt-responsive AS events in tomato roots. This study uncovers the stimulation of AS during tomato root response to salt stress and provides a valuable resource of salt-responsive genes for future studies to improve tomato salt tolerance.
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Affiliation(s)
- Jianghuang Gan
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
| | - Yongqi Qiu
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
| | - Yilin Tao
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
| | - Laining Zhang
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
| | - Thomas W. Okita
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Yanyan Yan
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
| | - Li Tian
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, Zhejiang, China
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15
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Kirova E, Moskova I, Manova V, Koycheva Y, Tsekova Z, Borisova D, Nikolov H, Dimitrov V, Sergiev I, Kocheva K. Exogenous Cytokinin 4PU-30 Modulates the Response of Wheat and Einkorn Seedlings to Ultraviolet B Radiation. PLANTS (BASEL, SWITZERLAND) 2024; 13:1401. [PMID: 38794471 PMCID: PMC11125444 DOI: 10.3390/plants13101401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/15/2024] [Accepted: 05/15/2024] [Indexed: 05/26/2024]
Abstract
Abiotic stress is responsible for a significant reduction in crop plant productivity worldwide. Ultraviolet (UV) radiation is a natural component of sunlight and a permanent environmental stimulus. This study investigated the distinct responses of young wheat and einkorn plants to excessive UV-B radiation (180 min at λmax 312 nm) following foliar pretreatment with 1 µM synthetic cytokinin 4PU-30. Results demonstrated that UV radiation significantly amplified hydrogen peroxide levels in both wheat and einkorn, with einkorn exhibiting a more pronounced increase compared to wheat. This elevation indicated the induction of oxidative stress by UV radiation in the two genotypes. Intensified antioxidant enzyme activities and the increased accumulation of typical stress markers and non-enzyme protectants were evidenced. Transcriptional activity of genes encoding the key antioxidant enzymes POX, GST, CAT, and SOD was also investigated to shed some light on their genetic regulation in both wheat and einkorn seedlings. Our results suggested a role for POX1 and POX7 genes in the UV-B tolerance of the two wheat species as well as a cytokinin-stimulated UV-B stress response in einkorn involving the upregulation of the tau subfamily gene GSTU6. Based on all our findings, it could be concluded that 4PU-30 had the potential of alleviating oxidative stress by attenuating the symptoms of superfluous UV-B illumination in the two examined plant species.
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Affiliation(s)
- Elisaveta Kirova
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
| | - Irina Moskova
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
| | - Vasilissa Manova
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
| | - Yana Koycheva
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
| | - Zoia Tsekova
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
| | - Denitsa Borisova
- Space Research and Technology Institute, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 1, 1113 Sofia, Bulgaria; (D.B.); (H.N.); (V.D.)
| | - Hristo Nikolov
- Space Research and Technology Institute, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 1, 1113 Sofia, Bulgaria; (D.B.); (H.N.); (V.D.)
| | - Ventzeslav Dimitrov
- Space Research and Technology Institute, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 1, 1113 Sofia, Bulgaria; (D.B.); (H.N.); (V.D.)
| | - Iskren Sergiev
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
| | - Konstantina Kocheva
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. G. Bonchev Str., bl. 21, 1113 Sofia, Bulgaria; (E.K.); (I.M.); (Y.K.); (Z.T.); (I.S.)
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16
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Argueso CT, Kieber JJ. Cytokinin: From autoclaved DNA to two-component signaling. THE PLANT CELL 2024; 36:1429-1450. [PMID: 38163638 PMCID: PMC11062471 DOI: 10.1093/plcell/koad327] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/25/2023] [Accepted: 11/03/2023] [Indexed: 01/03/2024]
Abstract
Since its first identification in the 1950s as a regulator of cell division, cytokinin has been linked to many physiological processes in plants, spanning growth and development and various responses to the environment. Studies from the last two and one-half decades have revealed the pathways underlying the biosynthesis and metabolism of cytokinin and have elucidated the mechanisms of its perception and signaling, which reflects an ancient signaling system evolved from two-component elements in bacteria. Mutants in the genes encoding elements involved in these processes have helped refine our understanding of cytokinin functions in plants. Further, recent advances have provided insight into the mechanisms of intracellular and long-distance cytokinin transport and the identification of several proteins that operate downstream of cytokinin signaling. Here, we review these processes through a historical lens, providing an overview of cytokinin metabolism, transport, signaling, and functions in higher plants.
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Affiliation(s)
- Cristiana T Argueso
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Joseph J Kieber
- Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA
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17
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Chen L, Xie YL, Wu XH, Wu LL, Yang J, Gao Y, Mi Y, Yang F. Bioactivity and genome analysis of Bacillus amyloliquefaciens GL18 isolated from the rhizosphere of Kobresia myosuroides in an alpine meadow. Antonie Van Leeuwenhoek 2024; 117:16. [PMID: 38189906 DOI: 10.1007/s10482-023-01917-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 12/04/2023] [Indexed: 01/09/2024]
Abstract
The unique eco-environment of the Qinghai-Tibet Plateau breeds abundant microbial resources. In this research, Bacillus amyloliquefaciens GL18, isolated from the rhizosphere of Kobresia myosuroides from an alpine meadow, and the antagonistic activity, bacteriostatic hydrolase activity, and low temperature, salt, and drought resistance of it were determined and analysed. The seedlings of Avena sativa were root-irrigated using bacteria suspensions (cell concentration 1 × 107 cfu/mL) of GL18, and the growth-promoting effect of GL18 on it was determined under cold, salt and drought stress, respectively. The whole genome of GL18 was sequenced, and its functional genes were analysed. GL18 presented significant antagonistic activity to Fusarium graminearum, Fusarium acuminatum, Fusarium oxysporum and Aspergillus niger (inhibition zone diameter > 17 mm). Transparent zones formed on four hydrolase detection media, indicating that GL18 secreted cellulase, protease, pectinase and β-1,3-glucanase. GL18 tolerated conditions of 10 °C, 11% NaCl and 15% PEG-6000, presenting cold, salt and drought resistance. GL18 improved the cold, salt and drought tolerance of A. sativa and it showed significant growth effects under different stress. The total length of the GL18 genome was 3,915,550 bp, and the number of coding DNA sequence was 3726. Compared with the clusters of orthologous groups of proteins, gene ontology and kyoto encyclopedia of genes and genomes databases, 3088, 2869 and 2357 functional genes were annotated, respectively. GL18 contained gene clusters related to antibacterial substances, functional genes related to the synthesis of plant growth-promoting substances, and encoding genes related to stress resistance. This study identified an excellent Bacillus strain and provided a theoretical basis for improving stress resistance and promoting the growth of herbages under abiotic stress.
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Affiliation(s)
- L Chen
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - Y L Xie
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China.
- Key Laboratory of Superior Forage Germplasm in the Qinghai-Tibetan Plateau, Qinghai University, Xining, 810016, China.
| | - X H Wu
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - L L Wu
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - J Yang
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - Y Gao
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - Y Mi
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - F Yang
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
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18
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Méndez T, Fuentes A, Cofre D, Moenne A, Laporte D. Oligo-Carrageenan Kappa Increases Expression of Genes Encoding Proteins Involved in Photosynthesis, C, N, and S Assimilation, and Growth in Arabidopsis thaliana. Int J Mol Sci 2023; 24:11894. [PMID: 37569270 PMCID: PMC10418774 DOI: 10.3390/ijms241511894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 07/19/2023] [Accepted: 07/23/2023] [Indexed: 08/13/2023] Open
Abstract
To analyze the effect of oligo-carrageenan (OC) kappa in the stimulation of growth in Arabidopsis thaliana, plants were sprayed on leaves with an aqueous solution of OC kappa at 1 mg mL-1, 5 times every 2 days and cultivated for 5 or 15 additional days. Plants treated with OC kappa showed an increase in rosette diameter, fresh and dry weight, and primary root length. Plants treated with OC kappa once and cultivated for 0 to 24 h after treatment were subjected to transcriptomic analyses to identify differentially expressed genes, mainly at 12 h after treatment. Transcripts encoding proteins involved in growth and development and photosynthesis were upregulated as well as enzymes involved in primary metabolism. In addition, plants treated with OC kappa once and cultivated for 0 to 96 h showed increased levels of transcripts encoding enzymes involved in C, N, and S assimilation at 6 and 12 h after treatment that remain increased until 96 h. Therefore, OC kappa increased the expression of genes encoding proteins involved in photosynthesis, C, N, and S assimilation, and growth in A. thaliana.
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Affiliation(s)
- Tamara Méndez
- Laboratory of Plant Physiology and Molecular Biology, Instituto de Ciencias Biomédicas, Universidad Autónoma de Chile, Talca 3467987, Chile; (T.M.); (A.F.); (D.C.)
| | - Alejandra Fuentes
- Laboratory of Plant Physiology and Molecular Biology, Instituto de Ciencias Biomédicas, Universidad Autónoma de Chile, Talca 3467987, Chile; (T.M.); (A.F.); (D.C.)
| | - Diego Cofre
- Laboratory of Plant Physiology and Molecular Biology, Instituto de Ciencias Biomédicas, Universidad Autónoma de Chile, Talca 3467987, Chile; (T.M.); (A.F.); (D.C.)
| | - Alejandra Moenne
- Laboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Santiago 9170022, Chile
| | - Daniel Laporte
- Laboratory of Plant Physiology and Molecular Biology, Instituto de Ciencias Biomédicas, Universidad Autónoma de Chile, Talca 3467987, Chile; (T.M.); (A.F.); (D.C.)
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19
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Zhao M, Du C, Zeng J, Gao Z, Zhu Y, Wang J, Zhang Y, Zhu Z, Wang Y, Chen M, Wang Y, Chang J, Yang G, He G, Li Y, Chen X. Integrated omic analysis provides insights into the molecular regulation of stress tolerance by partial root-zone drying in rice. FRONTIERS IN PLANT SCIENCE 2023; 14:1156514. [PMID: 37360728 PMCID: PMC10288491 DOI: 10.3389/fpls.2023.1156514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 04/26/2023] [Indexed: 06/28/2023]
Abstract
Partial root-zone drying (PRD) is an effective water-saving irrigation strategy that improves stress tolerance and facilitates efficient water use in several crops. It has long been considered that abscisic acid (ABA)-dependent drought resistance may be involved during partial root-zone drying. However, the molecular mechanisms underlying PRD-mediated stress tolerance remain unclear. It's hypothesized that other mechanisms might contribute to PRD-mediated drought tolerance. Here, rice seedlings were used as a research model and the complex transcriptomic and metabolic reprogramming processes were revealed during PRD, with several key genes involved in osmotic stress tolerance identified by using a combination of physiological, transcriptome, and metabolome analyses. Our results demonstrated that PRD induces transcriptomic alteration mainly in the roots but not in the leaves and adjusts several amino-acid and phytohormone metabolic pathways to maintain the balance between growth and stress response compared to the polyethylene glycol (PEG)-treated roots. Integrated analysis of the transcriptome and metabolome associated the co-expression modules with PRD-induced metabolic reprogramming. Several genes encoding the key transcription factors (TFs) were identified in these co-expression modules, highlighting several key TFs, including TCP19, WRI1a, ABF1, ABF2, DERF1, and TZF7, involved in nitrogen metabolism, lipid metabolism, ABA signaling, ethylene signaling, and stress regulation. Thus, our work presents the first evidence that molecular mechanisms other than ABA-mediated drought resistance are involved in PRD-mediated stress tolerance. Overall, our results provide new insights into PRD-mediated osmotic stress tolerance, clarify the molecular regulation induced by PRD, and identify genes useful for further improving water-use efficiency and/or stress tolerance in rice.
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Affiliation(s)
- Minhua Zhao
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Canghao Du
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Jian Zeng
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Zhihong Gao
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Yongyong Zhu
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Jinfei Wang
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Yupeng Zhang
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Zetao Zhu
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
| | - Yaqiong Wang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Mingjie Chen
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Yuesheng Wang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Junli Chang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Guangxiao Yang
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Guangyuan He
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Yin Li
- The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Xiaoyuan Chen
- Henry Fok School of Biology and Agriculture, Guangdong Engineering Technology Research Center for Efficient Utilization of Water and Soil Resources in North Region, Shaoguan University, Shaoguan, Guangdong, China
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Chen J, Wan H, Zhu W, Dai X, Yu Y, Zeng C. Identification and Expression Analysis of the Isopentenyl Transferase (IPT) Gene Family under Lack of Nitrogen Stress in Oilseed ( Brassica napus L.). PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112166. [PMID: 37299144 DOI: 10.3390/plants12112166] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 05/12/2023] [Accepted: 05/13/2023] [Indexed: 06/12/2023]
Abstract
BnIPT gene family members in Brassica napus and analyzing their expression under different exogenous hormones and abiotic stress treatments to provide a theoretical basis for clarifying their functions and molecular genetic mechanisms in nitrogen deficiency stress tolerance of B. napus. Using the Arabidopsis IPT protein as the seed sequence, combined with the IPT protein domain PF01715, 26 members of the BnIPT gene family were identified from the whole genome of the rape variety ZS11. Additionally, the physicochemical properties and structures, phylogenetic relationships, synteny relationships, protein-protein interaction network, and gene ontology enrichment were analyzed. Based on transcriptome data, the expression patterns of the BnIPT gene under different exogenous hormone and abiotic stress treatments were analyzed. We used the qPCR method to identify the relative expression level of BnIPT genes that may be related to the stress resistance of rapeseed in transcriptome analysis under normal nitrogen (N: 6 mmol·L-1) and nitrogen deficiency (N: 0) conditions and analyzed its effect on rapeseed under nitrogen deficiency stress role in tolerance. In response to nitrogen deficiency signals, the BnIPT gene showed a trend of up-regulation in shoots and down-regulation in roots, indicating that it may affect the process of nitrogen transport and redistribution to enhance the stress resistance of rapeseed to respond to the nitrogen deficiency stress. This study provides a theoretical basis for clarifying the function and molecular genetic mechanism of the BnIPT gene family in nitrogen deficiency stress tolerance in rape.
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Affiliation(s)
- Jingdong Chen
- College of Life Science, Jianghan University, Wuhan 430056, China
| | - Heping Wan
- College of Life Science, Jianghan University, Wuhan 430056, China
| | - Wenhui Zhu
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xigang Dai
- College of Life Science, Jianghan University, Wuhan 430056, China
| | - Yi Yu
- College of Life Science, Jianghan University, Wuhan 430056, China
| | - Changli Zeng
- College of Life Science, Jianghan University, Wuhan 430056, China
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21
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Guo Z, Gao Y, Yuan X, Yuan M, Huang L, Wang S, Liu C, Duan C. Effects of Heavy Metals on Stomata in Plants: A Review. Int J Mol Sci 2023; 24:9302. [PMID: 37298252 PMCID: PMC10252879 DOI: 10.3390/ijms24119302] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 05/18/2023] [Accepted: 05/23/2023] [Indexed: 06/12/2023] Open
Abstract
Stomata are one of the important structures for plants to alleviate metal stress and improve plant resistance. Therefore, a study on the effects and mechanisms of heavy metal toxicity to stomata is indispensable in clarifying the adaptation mechanism of plants to heavy metals. With the rapid pace of industrialization and urbanization, heavy metal pollution has been an environmental issue of global concern. Stomata, a special physiological structure of plants, play an important role in maintaining plant physiological and ecological functions. Recent studies have shown that heavy metals can affect the structure and function of stomata, leading to changes in plant physiology and ecology. However, although the scientific community has accumulated some data on the effects of heavy metals on plant stomata, the systematic understanding of the effects of heavy metals on plant stomata remains limited. Therefore, in this review, we present the sources and migration pathways of heavy metals in plant stomata, analyze systematically the physiological and ecological responses of stomata on heavy metal exposure, and summarize the current mechanisms of heavy metal toxicity on stomata. Finally, the future research perspectives of the effects of heavy metals on plant stomata are identified. This paper can serve as a reference for the ecological assessment of heavy metals and the protection of plant resources.
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Affiliation(s)
- Zhaolai Guo
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Yuhan Gao
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Xinqi Yuan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Mengxiang Yuan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Lv Huang
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Sichen Wang
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Chang’e Liu
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Changqun Duan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
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Feng Y, Ren Y, Zhang H, Heng Y, Wang Z, Wang Y. Halostachys caspica pathogenesis-related protein 10 acts as a cytokinin reservoir to regulate plant growth and development. FRONTIERS IN PLANT SCIENCE 2023; 14:1116985. [PMID: 37180382 PMCID: PMC10169677 DOI: 10.3389/fpls.2023.1116985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 04/04/2023] [Indexed: 05/16/2023]
Abstract
Pathogenesis-related class 10 (PR-10) proteins play a role in plant growth and development, but the underlying molecular mechanisms are unclear. Here, we isolated a salt-induced PR-10 gene from the halophyte Halostachys caspica and named it HcPR10. HcPR10 was constitutively expressed during development and HcPR10 localized to the nucleus and cytoplasm. HcPR10-mediated phenotypes including bolting, earlier flowering, increased branch number and siliques per plant are highly correlated with increased cytokinin levels in transgenic Arabidopsis. Meanwhile, increased levels of cytokinin in plants is temporally correlated with HcPR10 expression patterns. Although the expression of cytokinin biosynthesis genes validated was not upregulated, cytokinin-related genes including chloroplast-related genes, cytokinin metabolism and cytokinin responses genes and flowering-related genes were significantly upregulated in the transgenic Arabidopsis compared to the wild type by transcriptome deep sequencing. Analysis of the crystal structure of HcPR10 revealed a trans-zeatin riboside (a type of cytokinin) located deep in its cavity, with a conserved conformation and protein-ligand interactions, supporting HcRP10 acts as a cytokinin reservoir. Moreover, HcPR10 in Halostachys caspica predominantly accumulated in vascular tissue, the site of long-distance translocation of plant hormones. Collectively, we draw that HcPR10 as a cytokinin reservoir induces cytokinin-related signal transduction in plants, thereby promoting plant growth and development. These findings could provide intriguing insights into the role of HcPR10 proteins in phytohormone regulation in plants and advance our understanding of cytokinin-mediated plant development and could facilitate the breeding of transgenic crops with earlier mature, higher yielding agronomic traits.
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Affiliation(s)
- Yudan Feng
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, China
| | - Yanpeng Ren
- Key Laboratory of Cell Proliferation and Regulation Biology of Ministry of Education, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Hua Zhang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, China
| | - Youqiang Heng
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, China
| | - Zhanxin Wang
- Key Laboratory of Cell Proliferation and Regulation Biology of Ministry of Education, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Yan Wang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, China
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23
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Ji B, Xuan L, Zhang Y, Mu W, Paek KY, Park SY, Wang J, Gao W. Application of Data Modeling, Instrument Engineering and Nanomaterials in Selected Medid the Scientific Recinal Plant Tissue Culture. PLANTS (BASEL, SWITZERLAND) 2023; 12:1505. [PMID: 37050131 PMCID: PMC10096660 DOI: 10.3390/plants12071505] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/10/2023] [Accepted: 03/24/2023] [Indexed: 06/19/2023]
Abstract
At present, most precious compounds are still obtained by plant cultivation such as ginsenosides, glycyrrhizic acid, and paclitaxel, which cannot be easily obtained by artificial synthesis. Plant tissue culture technology is the most commonly used biotechnology tool, which can be used for a variety of studies such as the production of natural compounds, functional gene research, plant micropropagation, plant breeding, and crop improvement. Tissue culture material is a basic and important part of this issue. The formation of different plant tissues and natural products is affected by growth conditions and endogenous substances. The accumulation of secondary metabolites are affected by plant tissue type, culture method, and environmental stress. Multi-domain technologies are developing rapidly, and they have made outstanding contributions to the application of plant tissue culture. The modes of action have their own characteristics, covering the whole process of plant tissue from the induction, culture, and production of natural secondary metabolites. This paper reviews the induction mechanism of different plant tissues and the application of multi-domain technologies such as artificial intelligence, biosensors, bioreactors, multi-omics monitoring, and nanomaterials in plant tissue culture and the production of secondary metabolites. This will help to improve the tissue culture technology of medicinal plants and increase the availability and the yield of natural metabolites.
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Affiliation(s)
- Baoyu Ji
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China
- Shool of Pharmacy, Henan University of Chinese Medicine, Zhengzhou 450046, China
| | - Liangshuang Xuan
- Shool of Pharmacy, Henan University of Chinese Medicine, Zhengzhou 450046, China
| | - Yunxiang Zhang
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China
| | - Wenrong Mu
- Shool of Pharmacy, Henan University of Chinese Medicine, Zhengzhou 450046, China
| | - Kee-Yoeup Paek
- Department of Horticultural Science, Chungbuk National University, Cheongju 28644, Republic of Korea
| | - So-Young Park
- Department of Horticultural Science, Chungbuk National University, Cheongju 28644, Republic of Korea
| | - Juan Wang
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China
| | - Wenyuan Gao
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China
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Rong ZY, Lei AQ, Wu QS, Srivastava AK, Hashem A, Abd_Allah EF, Kuča K, Yang T. Serendipita indica promotes P acquisition and growth in tea seedlings under P deficit conditions by increasing cytokinins and indoleacetic acid and phosphate transporter gene expression. FRONTIERS IN PLANT SCIENCE 2023; 14:1146182. [PMID: 37008477 PMCID: PMC10064445 DOI: 10.3389/fpls.2023.1146182] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 02/13/2023] [Indexed: 06/19/2023]
Abstract
The culturable endophytic fungus Serendipita indica has many beneficial effects on plants, but whether and how it affects physiological activities and phosphorus (P) acquisition of tea seedlings at low P levels is unclear. The objective of this study was to analyze the effects of inoculation with S. indica on growth, gas exchange, chlorophyll fluorescence, auxins, cytokinins, P levels, and expressions of two phosphate transporter (PT) genes in leaves of tea (Camellia sinensis L. cv. Fudingdabaicha) seedlings grown at 0.5 μM (P0.5) and 50 μM (P50) P levels. Sixteen weeks after the inoculation, S. indica colonized roots of tea seedlings, with root fungal colonization rates reaching 62.18% and 81.34% at P0.5 and P50 levels, respectively. Although plant growth behavior, leaf gas exchange, chlorophyll values, nitrogen balance index, and chlorophyll fluorescence parameters of tea seedlings were suppressed at P0.5 versus P50 levels, inoculation of S. indica mitigated the negative effects to some extent, along with more prominent promotion at P0.5 levels. S. indica inoculation significantly increased leaf P and indoleacetic acid concentrations at P0.5 and P50 levels and leaf isopentenyladenine, dihydrozeatin, and transzeatin concentrations at P0.5 levels, coupled with the reduction of indolebutyric acid at P50 levels. Inoculation of S. indica up-regulated the relative expression of leaf CsPT1 at P0.5 and P50 levels and CsPT4 at P0.5 levels. It is concluded that S. indica promoted P acquisition and growth in tea seedlings under P deficit conditions by increasing cytokinins and indoleacetic acid and CsPT1 and CsPT4 expression.
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Affiliation(s)
- Zi-Yi Rong
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China
| | - An-Qi Lei
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China
| | - Qiang-Sheng Wu
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, Anhui, China
- Department of Chemistry, Faculty of Science, University of Hradec Kralove, Hradec Kralove, Czechia
| | | | - Abeer Hashem
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Elsayed Fathi Abd_Allah
- Plant Production Department, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Kamil Kuča
- Department of Chemistry, Faculty of Science, University of Hradec Kralove, Hradec Kralove, Czechia
| | - Tianyuan Yang
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, Anhui, China
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Zou C, Guo Z, Zhao S, Chen J, Zhang C, Han H. Genome-wide analysis of long non-coding RNAs in sugar beet ( Beta vulgaris L.) under drought stress. FRONTIERS IN PLANT SCIENCE 2023; 14:1118011. [PMID: 36866366 PMCID: PMC9971629 DOI: 10.3389/fpls.2023.1118011] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 01/06/2023] [Indexed: 06/18/2023]
Abstract
Drought stress is one of the most severe abiotic stresses that restrict global crop production. Long non-coding RNAs (lncRNAs) have been proved to play a key role in response to drought stress. However, genome-wide identification and characterization of drought-responsive lncRNAs in sugar beet is still lacking. Thus, the present study focused on analyzing lncRNAs in sugar beet under drought stress. We identified 32017 reliable lncRNAs in sugar beet by strand-specific high-throughput sequencing. A total of 386 differentially expressed lncRNAs (DElncRNAs) were found under drought stress. The most significantly upregulated and downregulated lncRNAs were TCONS_00055787 (upregulated by more than 6000 fold) and TCONS_00038334 (downregulated by more than 18000 fold), respectively. Quantitative real-time PCR results exhibited a high concordance with RNA sequencing data, which conformed that the expression patterns of lncRNAs based on RNA sequencing were highly reliable. In addition, we predicted 2353 and 9041 transcripts that were estimated to be the cis- and trans-target genes of the drought-responsive lncRNAs. As revealed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, the target genes of DElncRNAs were significantly enriched in organelle subcompartment, thylakoid, endopeptidase activity, catalytic activity, developmental process, lipid metabolic process, RNA polymerase activity, transferase activity, flavonoid biosynthesis and several other terms associated with abiotic stress tolerance. Moreover, 42 DElncRNAs were predicted as potential miRNA target mimics. LncRNAs have important effects on plant adaptation to drought conditions through the interaction with protein-encoding genes. The present study leads to greater insights into lncRNA biology and offers candidate regulators for improving the drought tolerance of sugar beet cultivars at the genetic level.
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Xing P, Luo H, He Z, He L, Zhao H, Tang X, Duan M. Trans-Zeatin induce regulation the biosynthesis of 2-acetyl-1-pyrroline in fragrant rice (Oryza sativa L.) seedlings. BMC PLANT BIOLOGY 2023; 23:88. [PMID: 36765297 PMCID: PMC9921689 DOI: 10.1186/s12870-023-04106-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 02/07/2023] [Indexed: 06/18/2023]
Abstract
BACKGROUND In plants, cytokinin is activated into trans-zeatin to fight abiotic stresses. However, the mechanism of the effect of trans-zeatin on 2-acetyl-1-pyrroline (2-AP) biosynthesis in fragrant rice has yet to be studied. The present study was conducted to explore the effects of exogenous trans-zeatin on enzymes activities, genes expression, and precursors involved in 2-AP biosynthesis and 2-AP contents as well as the seedling quality of a fragrant rice cultivar viz., Meixiangzhan2. Four concentrations of trans-zeatin solutions at 20, 40, and 80 μmol L- 1 (ZT1, ZT2, and ZT3) were sprayed onto rice seedlings. RESULTS Compared to the control, trans-zeatin treatments showed significantly higher 2-AP contents of fragrant rice seedlings. Increased plant height and stem width were observed due to trans-zeatin treatments. The trans-zeatin application increased 1-pyrroline, methylglyoxal, proline, and P5C contents, enhanced P5CS and OAT activities, and reduced glutamic acid contents. In addition, expressions of ProDH, P5CS2, and DAO4 were comparatively higher under trans-zeatin treatments than CK in fragrant rice seedlings. CONCLUSIONS Overall, up-regulation of P5C, 1-pyrroline, and proline and down-regulation of glutamic acid under appropriate trans-zeatin concentrations (20 and 40 μmol L- 1) resulted in enhanced 2-AP biosynthesis in fragrant rice seedlings and 20-40 μmol L- 1 was considered as the suggested concentrations of trans-zeatin application in fragrant rice seedling.
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Affiliation(s)
- Pipeng Xing
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant rice, Guangzhou, 510642, China
| | - Haowen Luo
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant rice, Guangzhou, 510642, China
| | - Zhenzhen He
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant rice, Guangzhou, 510642, China
| | - Longxin He
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510642, China
- Guangzhou Key Laboratory for Science and Technology of Fragrant rice, Guangzhou, 510642, China
| | - Hua Zhao
- Key Laboratory of Modern Biological Seed Industry in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510000, China
| | - Xiangru Tang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China.
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510642, China.
- Guangzhou Key Laboratory for Science and Technology of Fragrant rice, Guangzhou, 510642, China.
| | - Meiyang Duan
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China.
- Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, 510642, China.
- Guangzhou Key Laboratory for Science and Technology of Fragrant rice, Guangzhou, 510642, China.
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Zheng X, Zhang S, Liang Y, Zhang R, Liu L, Qin P, Zhang Z, Wang Y, Zhou J, Tang X, Zhang Y. Loss-function mutants of OsCKX gene family based on CRISPR-Cas systems revealed their diversified roles in rice. THE PLANT GENOME 2023:e20283. [PMID: 36660867 DOI: 10.1002/tpg2.20283] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 10/08/2022] [Indexed: 06/17/2023]
Abstract
Cytokinin (CTK) is an important plant hormone that promotes cell division, controls cell differentiation, and regulates a variety of plant growth and development processes. Cytokinin oxidase/dehydrogenase (CKX) is an irreversible cytokinin-degrading enzyme that affects plant growth and development by regulating the dynamic balance of CTKs synthesis and degradation. There are presumed 11 members of the CKX gene family in rice (Oryza sativa L.), but limited members have been reported. In this study, based on CRISPR-Cas9 and CRISPR-Cas12a genome-editing technology, we established a complete set of OsCKX1-OsCKX11 single-gene mutants, as well as double-gene and triple-gene mutants of different OsCKXs gene combinations with high similarity. The results revealed that CRISPR-Cas12a outperformed Cas9 to generate biallelic mutations, multi-gene mutants, and more diverse genotypes. And then, we found, except the reported OsCKX2, OsCKX4, OsCKX9 and OsCKX11, OsCKX5, OsCKX6, OsCKX7, and OsCKX8 also had significant effects on agronomic traits such as plant height, panicle size, grain size, and grain number per panicle in rice. In addition, the different loss-of-function of the OsCKX genes also changed the seed appearance quality and starch composition. Interestingly, by comparing different combinations of multi-gene mutants, we found significant functional redundancy among OsCKX gene members in the same phylogenetic clade. These data collectively reveal the diversified regulating capabilities of OsCKX genes in rice, and also provide the valuable reference for further rice molecular breeding.
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Affiliation(s)
- Xuelian Zheng
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Shuting Zhang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Yanling Liang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Rui Zhang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Li Liu
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Pengchen Qin
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Zhe Zhang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Yan Wang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Jianping Zhou
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Xu Tang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Yong Zhang
- Dep. of Biotechnology, School of Life Sciences and Technology, Center for Informational Biology, Univ. of Electronic Science and Technology of China, Chengdu, 610054, China
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Pantoja-Benavides AD, Garces-Varon G, Restrepo-Díaz H. Foliar cytokinins or brassinosteroids applications influence the rice plant acclimatization to combined heat stress. FRONTIERS IN PLANT SCIENCE 2022; 13:983276. [PMID: 36618669 PMCID: PMC9815704 DOI: 10.3389/fpls.2022.983276] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 10/31/2022] [Indexed: 06/17/2023]
Abstract
The effect of different foliar sprays numbers of cytokinins - (CK) and brassinosteroids - (BR) on the physiological, biochemical, and panicle parameters of rice plants subjected to combined heat stress (high day/night temperatures) were studied in three different experiments. The treatments established for the first (E1) and second (E2) experiments were the following: i) absolute control, ii) stress control, iii) heat stress + one foliar spray of CK, iv) heat stress + two foliar sprays of CK, v) heat stress + three foliar sprays of CK, vi) heat stress + one foliar spray of BR, vii) heat stress + two foliar sprays of BR, or viii) heat stress + three foliar sprays of BR. For the third experiment (E3), the treatments were the following: i) absolute control, ii) stress control, iii) heat stress + three foliar applications of CK, iv) heat stress + three foliar applications of BR. Rice-stressed plants and sprayed with three foliar sprays of CK or BR had a better stomatal conductance in E1 and E2 compared to their heat-stressed control. The relative tolerance index suggests that three CK or BR applications helped to mitigate the combined heat stress in both experiments. The foliar CK or BR applications at the flowering and grain-filling stages in rice-stressed plants increased Fv/Fm ratio and panicle characteristics (number of filled spikelets and the percentage of panicle blanking in E3). In conclusion, foliar applications of BR or CK can be considered an agronomic strategy to help improve the negative effect of combined heat stress conditions on the physiological behavior of rice plants during different phenological stages.
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Affiliation(s)
| | | | - Hermann Restrepo-Díaz
- Universidad Nacional de Colombia, Sede Bogotá, Facultad de Ciencias Agrarias, Departamento de Agronomía, Bogotá, Colombia
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Das PP, Singh KR, Nagpure G, Mansoori A, Singh RP, Ghazi IA, Kumar A, Singh J. Plant-soil-microbes: A tripartite interaction for nutrient acquisition and better plant growth for sustainable agricultural practices. ENVIRONMENTAL RESEARCH 2022; 214:113821. [PMID: 35810815 DOI: 10.1016/j.envres.2022.113821] [Citation(s) in RCA: 102] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 06/24/2022] [Accepted: 07/01/2022] [Indexed: 06/15/2023]
Abstract
Plants can achieve their proper growth and development with the help of microorganisms associated with them. Plant-associated microbes convert the unavailable nutrients to available form and make them useful for plants. Besides nutrient acquisition, soil microbes also inhibit the pathogens that cause harm to plant growth and induces defense response. Due to the beneficial activities of soil nutrient-microbe-plant interactions, it is necessary to study more on this topic and develop microbial inoculant technology in the agricultural field for better crop improvement. The soil microbes can be engineered, and plant growth-promoting rhizobacteria (PGPR) and plant growth-promoting bacteria (PGPB) technology can be developed as well, as its application can be improved for utilization as biofertilizer, biopesticides, etc., instead of using harmful chemical biofertilizers. Moreover, plant growth-promoting microbe inoculants can enhance crop productivity. Although, scientists have discussed several tools and techniques by omics and gene editing approaches for crop improvement to avoid biotic and abiotic stress and make the plant healthier and more nutritive. However, beneficial soil microbes that help plants with the nutrient acquisition, development, and stress resistance were ignored, and farmers started utilizing chemical fertilizers. Thus, this review attempts to summarize the interaction system of plant microbes, the role of beneficiary soil microbes in the rhizosphere zone, and their role in plant health promotion, particularly in the nutrition acquisition of the plant. The review will also provide a better understanding of soil microbes that can be exploited as biofertilizers and plant growth promoters in the field to create environmentally friendly, sustainable agriculture systems.
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Affiliation(s)
- Prajna Priyadarshini Das
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Gachibowli, Hyderabad, 500046, India
| | - Kshitij Rb Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, 211005, India
| | - Gunjan Nagpure
- Department of Biotechnology, Faculty of Science, Indira Gandhi National Tribal University, Amarkantak, Madhya Pradesh, 484887, India
| | - Aadil Mansoori
- Department of Botany, Faculty of Science, Indira Gandhi National Tribal University, Amarkantak, Madhya Pradesh, 484887, India
| | - Ravindra Pratap Singh
- Department of Biotechnology, Faculty of Science, Indira Gandhi National Tribal University, Amarkantak, Madhya Pradesh, 484887, India
| | - Irfan Ahmad Ghazi
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Gachibowli, Hyderabad, 500046, India
| | - Anirudh Kumar
- Department of Botany, Faculty of Science, Indira Gandhi National Tribal University, Amarkantak, Madhya Pradesh, 484887, India.
| | - Jay Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, 211005, India.
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Mangena P. Evolving role of synthetic cytokinin 6-benzyl adenine for drought stress tolerance in soybean (Glycine max L. Merr.). FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.992581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The enhanced growth and productivity of soybeans during the past decades were possible due to the application of agrichemicals such as bio-fertilizers, chemical fertilizers, and the use of high yielding, as well as disease resistant transgenic and non-transgenic varieties. Agrichemicals applied as seed primers, plant protectants, and growth regulators, however, had a diminutive significance on growth and productivity improvements across the globe. The utilization of plant growth regulators (PGRs) for vegetative growth, reproduction and yield quality improvements remains unexplored, particularly, the use of cytokinins such as 6-benzyl adenine (6-BAP) to improve soybean response to abiotic stresses. Therefore, an understanding of the role of 6-BAP in the mediation of an array of adaptive responses that provide plants with the ability to withstand abiotic stresses must be thoroughly investigated. Such mitigative effects will play a critical role in encouraging exogenous application of plant hormones like 6-BAP as a mechanism for overcoming drought stress related effects in soybean. This paper discusses the evolving role of synthetic cytokinin 6-bezyl adenine in horticulture, especially the implications of its exogenous applications in soybean to confer tolerance to drought stress.
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Uniyal S, Bhandari M, Singh P, Singh RK, Tiwari SP. Cytokinin biosynthesis in cyanobacteria: Insights for crop improvement. Front Genet 2022; 13:933226. [PMID: 36160007 PMCID: PMC9504062 DOI: 10.3389/fgene.2022.933226] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Accepted: 07/25/2022] [Indexed: 11/25/2022] Open
Abstract
Cytokinins, a type of phytohormones that induce division of cytoplasm, have considerable value in agriculture due to their influences on several physiological processes of plants such as morphogenesis, development of chloroplast, seed dormancy, leaf senescence, etc. Previously, it was assumed that plants obtain cytokinin from the soil produced by microbes as these hormones were first discovered in soil-inhabiting bacteria i.e., Agrobacterium tumefaciens. Later, the cytokinin biosynthesis gene, i.e., ipt gene, has been reported in plants too. Though plants synthesize cytokinins, several studies have reported that the exogenous application of cytokinins has numerous beneficial effects including the acceleration of plant growth and boosting economic yield. Cyanobacteria may be employed in the soil not only as the source of cytokinins but also as the source of other plant growth-promoting metabolites. These organisms biosynthesize the cytokinins using the enzyme isopentenyl transferases (IPTs) in a fashion similar to the plants; however, there are few differences in the biosynthesis mechanism of cytokinins in cyanobacteria and plants. Cytokinins are important for the establishment of interaction between plants and cyanobacteria as evidenced by gene knockout experiments. These hormones are also helpful in alleviating the adverse effects of abiotic stresses on plant development. Cyanobacterial supplements in the field result in the induction of adventitious roots and shoots on petiolar as well as internodal segments. The leaf, root, and stem explants of certain plants exhibited successful regeneration when treated with cyanobacterial extract/cell suspension. These successful regeneration practices mark the way of cyanobacterial deployment in the field as a great move toward the goal of sustainable agriculture.
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Affiliation(s)
- Shashi Uniyal
- Department of Microbiology, School of Life Sciences, H.N.B Garhwal University, Srinagar, Uttarakhand, India
| | - Munni Bhandari
- Department of Microbiology, School of Life Sciences, H.N.B Garhwal University, Srinagar, Uttarakhand, India
| | - Preeti Singh
- Department of Microbiology, School of Life Sciences, H.N.B Garhwal University, Srinagar, Uttarakhand, India
| | - Rahul Kunwar Singh
- Department of Microbiology, School of Life Sciences, H.N.B Garhwal University, Srinagar, Uttarakhand, India
| | - Shree Prakash Tiwari
- Department of Microbiology, V.B.S Purvanchal University, Jaunpur, Uttar Pradesh, India
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Sun L, Lv L, Zhao J, Hu M, Zhang Y, Zhao Y, Tang X, Wang P, Li Q, Chen X, Li H, Zhang Y. Genome-wide identification and expression analysis of the TaRRA gene family in wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2022; 13:1006409. [PMID: 36110359 PMCID: PMC9468597 DOI: 10.3389/fpls.2022.1006409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 08/12/2022] [Indexed: 06/15/2023]
Abstract
Cytokinin is an important endogenous hormone in plants performing a wide spectrum of biological roles. The type-A response regulators (RRAs) are primary cytokinin response genes, which are important components of the cytokinin signaling pathway and are involved in the regulation of plant growth and development. By analysis of the whole genome sequence of wheat, we identified 20 genes encoding RRAs which were clustered into eight homologous groups. The gene structure, conserved motifs, chromosomal location, and cis-acting regulatory elements of the TaRRAs were analyzed. Quantitative real-time polymerase chain reaction (qRT-PCR) results showed that the expression levels of most of the TaRRAs increased rapidly on exogenous cytokinin application. Moreover, the TaRRA family members displayed different expression profiles under the stress treatments of drought, salt, cold, and heat. This study provides valuable insights into the RRA gene family in wheat and promotes the potential application of these genes in wheat genetic improvement.
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Sharma A, Prakash S, Chattopadhyay D. Killing two birds with a single stone-genetic manipulation of cytokinin oxidase/dehydrogenase ( CKX) genes for enhancing crop productivity and amelioration of drought stress response. Front Genet 2022; 13:941595. [PMID: 35923693 PMCID: PMC9340367 DOI: 10.3389/fgene.2022.941595] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 06/29/2022] [Indexed: 12/02/2022] Open
Abstract
The development of high-yielding, bio-fortified, stress-tolerant crop cultivars is the need of the hour in the wake of increasing global food insecurity, abrupt climate change, and continuous shrinking of resources and landmass suitable for agriculture. The cytokinin group of phytohormones positively regulates seed yield by simultaneous regulation of source capacity (leaf senescence) and sink strength (grain number and size). Cytokinins also regulate root-shoot architecture by promoting shoot growth and inhibiting root growth. Cytokinin oxidase/dehydrogenase (CKX) are the only enzymes that catalyze the irreversible degradation of active cytokinins and thus negatively regulate the endogenous cytokinin levels. Genetic manipulation of CKX genes is the key to improve seed yield and root-shoot architecture through direct manipulation of endogenous cytokinin levels. Downregulation of CKX genes expressed in sink tissues such as inflorescence meristem and developing seeds, through reverse genetics approaches such as RNAi and CRISPR/Cas9 resulted in increased yield marked by increased number and size of grains. On the other hand, root-specific expression of CKX genes resulted in decreased endogenous cytokinin levels in roots which in turn resulted in increased root growth indicated by increased root branching, root biomass, and root-shoot biomass ratio. Enhanced root growth provided enhanced tolerance to drought stress and improved micronutrient uptake efficiency. In this review, we have emphasized the role of CKX as a genetic factor determining yield, micronutrient uptake efficiency, and response to drought stress. We have summarised the efforts made to increase crop productivity and drought stress tolerance in different crop species through genetic manipulation of CKX family genes.
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34
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Prasad R. Cytokinin and Its Key Role to Enrich the Plant Nutrients and Growth Under Adverse Conditions-An Update. Front Genet 2022; 13:883924. [PMID: 35795201 PMCID: PMC9252289 DOI: 10.3389/fgene.2022.883924] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 05/05/2022] [Indexed: 11/13/2022] Open
Abstract
Among the field crops, wheat is regarded as one of the most paramount cereal crops because it is widely grown, consumed as food across the world, and also known as the staple food for nearly 35 per cent of the world population. However, it is threatened by spot blotch disease causing considerable yield loss, with existing genotypes lacking the resistance and the necessary nutrients. Cytokinins (CKs) are key phytohormones that not only regulate the plant growth/development but also play an important role during stress and in the nutrient metabolic pathway of crop plants. Deficiency of important nutrients like zinc, iron, and vitamin A causes irreparable damage to the body, pressing the need to increase the accumulation of such micronutrients in the edible parts of the plant. Crop bio-fortification is one of the emerging approaches through which the quantities of these nutrients could be increased to an advisable amount. Cytokinin is observed to have a pivotal role in managing environmental stress/climate change and defense systems of plants, and apart from this, it is also found that it has an impact over Zn accumulation in cereal crops. Manipulation of the cytokine dehydrogenase (CKX) enzyme that degrades cytokinin could affect the yield, root growth, and important nutrients. Several instances revealed that an increment in the contents of Zn, S, Fe, and Mn in the seeds of cereals is a reflection of increasing the activity of CKX enzyme resulting the enhancement of the root system which not only helps in the absorption of water in a drought prone area but is also beneficial for scavenging nutrients to the deeper ends of the soil. Exploring micronutrients from the lithosphere via the root system helps in the uptake of the micronutrients and transporting them via the vascular system to the sink of crop plants, therefore, identification and incorporation of CKs/CKX linked gene(s) into targeted crop plants, exploring a bio-fortification approach including CRISPR-Cas9 through conventional and molecular breeding approaches could be the most paramount job for improving the important traits and stress management in order to enhance the plant growth, productivity, and nutritional value of the wheat crops, which would be useful for mankind.
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35
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Zhang X, Liu D, Gao D, Zhao W, Du H, Qiu Z, Huang J, Wen P, Wang Y, Li Q, Wang W, Xu H, He J, Liu Y, Wan J. Cytokinin Confers Brown Planthopper Resistance by Elevating Jasmonic Acid Pathway in Rice. Int J Mol Sci 2022; 23:5946. [PMID: 35682620 PMCID: PMC9180265 DOI: 10.3390/ijms23115946] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 05/22/2022] [Accepted: 05/22/2022] [Indexed: 01/23/2023] Open
Abstract
Plants have evolved a sophisticated defense system that employs various hormone pathways to defend against attacks by insect pests. Cytokinin (CK) plays an important role in plant growth and stress tolerance, but the role of CKs in plant-insect interaction remains largely unclear. Here, we report that CKs act as a positive regulator in rice resistance against brown planthopper (BPH), a devastating insect pest of rice. We found that BPH feeding promotes CK biosynthesis and signaling in rice. Exogenous application of CKs significantly increased the rice resistance to BPH. Increasing endogenous CKs by knocking out cytokinin oxidase/dehydrogenase (OsCKXs) led to enhanced resistance to BPH. Moreover, the levels of the plant hormone jasmonic acid (JA) and the expression of JA-responsive genes were elevated by CK treatment and in OsCKXs knockout plants. Furthermore, JA-deficient mutant og1 was more susceptible to BPH, and CK-induced BPH resistance was suppressed in og1. These results indicate that CK-mediated BPH resistance is JA-dependent. Our findings provide the direct evidence for the novel role of CK in promoting insect resistance, and demonstrate that CK-induced insect resistance is JA-dependent. These results provide important guidance for effective pest management strategies in the future.
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Affiliation(s)
- Xiao Zhang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Daoming Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Dong Gao
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Weining Zhao
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Huaying Du
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Zeyu Qiu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Jie Huang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Peizheng Wen
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Yongsheng Wang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Qi Li
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Wenhui Wang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Haosen Xu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Jun He
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Yuqiang Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Jianmin Wan
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
- National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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Papon N, Courdavault V. ARResting cytokinin signaling for salt-stress tolerance. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 314:111116. [PMID: 34895545 DOI: 10.1016/j.plantsci.2021.111116] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 11/08/2021] [Accepted: 11/12/2021] [Indexed: 06/14/2023]
Abstract
Cytokinins (CKs) are primarily known as a prominent type of plant hormones with pleiotropic functions such as the control of the cell division and morphogenesis. CKs are also well known to orchestrate plant responses to many types of environmental stresses. More specifically, CKs were previously shown to negatively regulate the response to salinity stress. However, the molecular mechanisms underlying this physiological process have not been investigated in detail. In a new report, Yan and colleagues show that salt stress interrupts the CK transduction pathway by promoting the degradation of some CK signaling modules. This represents an unprecedented advancement in our comprehension of how plants are able to inhibit their own development under stress conditions by interfering with the cell signaling circuitry of a growth hormone.
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Affiliation(s)
- Nicolas Papon
- Univ Angers, Univ Brest, GEIHP, SFR ICAT, F-49000, Angers, France.
| | - Vincent Courdavault
- Université de Tours, EA2106 "Biomolécules et Biotechnologies Végétales", Tours, France.
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Sadura I, Janeczko A. Brassinosteroids and the Tolerance of Cereals to Low and High Temperature Stress: Photosynthesis and the Physicochemical Properties of Cell Membranes. Int J Mol Sci 2021; 23:342. [PMID: 35008768 PMCID: PMC8745458 DOI: 10.3390/ijms23010342] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 12/17/2021] [Accepted: 12/27/2021] [Indexed: 12/12/2022] Open
Abstract
Cereals, which belong to the Poaceae family, are the most economically important group of plants. Among abiotic stresses, temperature stresses are a serious and at the same time unpredictable problem for plant production. Both frost (in the case of winter cereals) and high temperatures in summer (especially combined with a water deficit in the soil) can result in significant yield losses. Plants have developed various adaptive mechanisms that have enabled them to survive periods of extreme temperatures. The processes of acclimation to low and high temperatures are controlled, among others, by phytohormones. The current review is devoted to the role of brassinosteroids (BR) in cereal acclimation to temperature stress with special attention being paid to the impact of BR on photosynthesis and the membrane properties. In cereals, the exogenous application of BR increases frost tolerance (winter rye, winter wheat), tolerance to cold (maize) and tolerance to a high temperature (rice). Disturbances in BR biosynthesis and signaling are accompanied by a decrease in frost tolerance but unexpectedly an improvement of tolerance to high temperature (barley). BR exogenous treatment increases the efficiency of the photosynthetic light reactions under various temperature conditions (winter rye, barley, rice), but interestingly, BR mutants with disturbances in BR biosynthesis are also characterized by an increased efficiency of PSII (barley). BR regulate the sugar metabolism including an increase in the sugar content, which is of key importance for acclimation, especially to low temperatures (winter rye, barley, maize). BR either participate in the temperature-dependent regulation of fatty acid biosynthesis or control the processes that are responsible for the transport or incorporation of the fatty acids into the membranes, which influences membrane fluidity (and subsequently the tolerance to high/low temperatures) (barley). BR may be one of the players, along with gibberellins or ABA, in acquiring tolerance to temperature stress in cereals (particularly important for the acclimation of cereals to low temperature).
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Affiliation(s)
- Iwona Sadura
- Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Niezapominajek 21, 30-239 Kraków, Poland
| | - Anna Janeczko
- Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Niezapominajek 21, 30-239 Kraków, Poland
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Diverse Effect of Two Cytokinins, Kinetin and Benzyladenine, on Plant Development, Biotic Stress Tolerance, and Gene Expression. Life (Basel) 2021; 11:life11121404. [PMID: 34947935 PMCID: PMC8706806 DOI: 10.3390/life11121404] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 12/07/2021] [Accepted: 12/11/2021] [Indexed: 02/02/2023] Open
Abstract
The plant hormones cytokinins affect a various array of plant growth and development processes as well as responses to biotic and abiotic stresses. In this study, the opposite effect of two different cytokinins kinetin (N6-furfuryladenine) and benzyladenine (BA) on development and on the tolerance of Arabidopsis and tobacco plants to virus, bacteria, and fungi infection was reported. Treatments of Arabidopsis and tobacco seedlings with saturated solutions of BA inhibited plant progress, while treatments with saturated water solution of kinetin promoted plant development. Furthermore, BA pre-treatments strongly reduced the number of TMV (Tobacco mosaic virus) lesions on tobacco and the tissue damage caused by the incompatible Pseudomonas bacteria on Arabidopsis and tobacco leaves. Similarly, BA pre-treatment significantly reduced the necrotic disease symptoms of Botrytis cinerea infection. Kinetin pre-treatments had a much weaker or no protective effect on the damage caused by the above pathogens. Accordingly, Arabidopsis gene expression profiles after treatments also showed that the two cytokinins have different effects on several plant processes. The gene expression results supported the more robust effect of BA, which up and downregulated more than 2000 genes, while only 436 genes were influenced by kinetin treatment. It is noteworthy that BA and kinetin treatment changed gene expressions in the same direction only in a relatively few cases (73 upregulated and 70 downregulated genes), and even 28 genes were regulated into the opposite directions by BA and kinetin. Both treatments had a strong effect on auxin and gibberellin-related genes, but only BA had a significant effect on cytokinin-induced processes. While kinetin exclusively activated the flavonoid synthesis genes, BA affected more significantly protein synthesis, photosynthesis, and plant defence-related genes. In conclusion, BA solution had sometimes the opposite and generally a much stronger effect than kinetin solution not only on the development and on biotic stress tolerance of tobacco and Arabidopsis plants but also on the gene expressions. The stronger protective effect of BA to necrotic stresses is probably due to its stronger senescence inhibitory effect on plant tissues, as supported by the stronger chlorophyll retardation of the BA-treated leaves.
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Dannfald A, Favory JJ, Deragon JM. Variations in transfer and ribosomal RNA epitranscriptomic status can adapt eukaryote translation to changing physiological and environmental conditions. RNA Biol 2021; 18:4-18. [PMID: 34159889 PMCID: PMC8677040 DOI: 10.1080/15476286.2021.1931756] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 05/07/2021] [Accepted: 05/13/2021] [Indexed: 01/27/2023] Open
Abstract
The timely reprogramming of gene expression in response to internal and external cues is essential to eukaryote development and acclimation to changing environments. Chemically modifying molecular receptors and transducers of these signals is one way to efficiently induce proper physiological responses. Post-translation modifications, regulating protein biological activities, are central to many well-known signal-responding pathways. Recently, messenger RNA (mRNA) chemical (i.e. epitranscriptomic) modifications were also shown to play a key role in these processes. In contrast, transfer RNA (tRNA) and ribosomal RNA (rRNA) chemical modifications, although critical for optimal function of the translation apparatus, and much more diverse and quantitatively important compared to mRNA modifications, were until recently considered as mainly static chemical decorations. We present here recent observations that are challenging this view and supporting the hypothesis that tRNA and rRNA modifications dynamically respond to various cell and environmental conditions and contribute to adapt translation to these conditions.
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Affiliation(s)
- Arnaud Dannfald
- CNRS LGDP-UMR5096, Pepignan, France
- Université de Perpignan via Domitia, Perpignan, France
| | - Jean-Jacques Favory
- CNRS LGDP-UMR5096, Pepignan, France
- Université de Perpignan via Domitia, Perpignan, France
| | - Jean-Marc Deragon
- CNRS LGDP-UMR5096, Pepignan, France
- Université de Perpignan via Domitia, Perpignan, France
- Institut Universitaire de France, Paris, France
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Wang WN, Min Z, Wu JR, Liu BC, Xu XL, Fang YL, Ju YL. Physiological and transcriptomic analysis of Cabernet Sauvginon (Vitis vinifera L.) reveals the alleviating effect of exogenous strigolactones on the response of grapevine to drought stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 167:400-409. [PMID: 34411779 DOI: 10.1016/j.plaphy.2021.08.010] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 08/05/2021] [Accepted: 08/07/2021] [Indexed: 06/13/2023]
Abstract
Drought stress can significantly affect the growth and yield of grapevine. The application of exogenous strigolactone can relieve the drought symptoms of grapevine; however, little is known about the transcription levels in grapevine under drought stress following exogenous strigolactone application. The mitigative effect of exogenous strigolactone on grapevine leaves under drought stress was studied by transcriptome analysis based on RNA sequencing. On the 10th day of drought stress, the strigolactone treatment group had a higher relative water content and lower electrical conductivity, which significantly alleviated the drought damage. Compared to the drought (D) group, a total of 5955 differentially expressed genes (DEGs) (2966 up-regulated genes and 2989 down-regulated genes) were detected in the exogenous strigolactone (DG) groups. Based on Gene Ontology analysis, the DEGs in the D and DG treatments were enriched in the processes of photosynthesis and organic acid catabolism. Pathway analysis showed that the DEGs in the D and DG treatments were enriched in carbon metabolism, ribosome, starch and sucrose metabolism, flavonoid biosynthesis, and circadian rhythm. Additionally, in the DG group, the antioxidant enzyme genes of CAT1, GSHPX1, GSHPX2, POD42, APX6, and SODCP were up-regulated, two NAC, three WRKY, and four MYB transcription factor genes were down-regulated, and the key gene of strigolactone synthesis D14 was up-regulated, compared with that in the D group. The results provide a new perspective for studying the adaptation of plants to drought stress.
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Affiliation(s)
- Wan-Ni Wang
- College of Enology, Northwest A & F University, Yangling, 712100, Shaanxi, China
| | - Zhuo Min
- Department of Brewing Engineering, Moutai University, Renhuai, Guizhou, 564507, China
| | - Jin-Ren Wu
- College of Enology, Northwest A & F University, Yangling, 712100, Shaanxi, China
| | - Bo-Chen Liu
- College of Enology, Northwest A & F University, Yangling, 712100, Shaanxi, China
| | - Xue-Lei Xu
- College of Enology, Northwest A & F University, Yangling, 712100, Shaanxi, China
| | - Yu-Lin Fang
- College of Enology, Northwest A & F University, Yangling, 712100, Shaanxi, China; Heyang Viti-viniculture Station, Northwest A & F University, Yangling, 712100, Shaanxi, China.
| | - Yan-Lun Ju
- College of Enology, Northwest A & F University, Yangling, 712100, Shaanxi, China.
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Yan Z, Wang J, Wang F, Xie C, Lv B, Yu Z, Dai S, Liu X, Xia G, Tian H, Li C, Ding Z. MPK3/6-induced degradation of ARR1/10/12 promotes salt tolerance in Arabidopsis. EMBO Rep 2021; 22:e52457. [PMID: 34402578 DOI: 10.15252/embr.202152457] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 07/18/2021] [Accepted: 07/30/2021] [Indexed: 11/09/2022] Open
Abstract
Cytokinins are phytohormones that regulate plant development, growth, and responses to stress. In particular, cytokinin has been reported to negatively regulate plant adaptation to high salinity; however, the molecular mechanisms that counteract cytokinin signaling and enable salt tolerance are not fully understood. Here, we provide evidence that salt stress induces the degradation of the cytokinin signaling components Arabidopsis (Arabidopisis thaliana) response regulator 1 (ARR1), ARR10 and ARR12. Furthermore, the stress-activated mitogen-activated protein kinase 3 (MPK3) and MPK6 interact with and phosphorylate ARR1/10/12 to promote their degradation in response to salt stress. As expected, salt tolerance is decreased in the mpk3/6 double mutant, but enhanced upon ectopic MPK3/MPK6 activation in an MKK5DD line. Importantly, salt hypersensitivity phenotypes of the mpk3/6 line were significantly alleviated by mutation of ARR1/12. The above results indicate that MPK3/6 enhance salt tolerance in part via their negative regulation of ARR1/10/12 protein stability. Thus, our work reveals a new molecular mechanism underlying salt-induced stress adaptation and the inhibition of plant growth, via enhanced degradation of cytokinin signaling components.
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Affiliation(s)
- Zhenwei Yan
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Junxia Wang
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Fengxia Wang
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Chuantian Xie
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Bingsheng Lv
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Zipeng Yu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Shaojun Dai
- Development Center of Plant Germplasm Resources, College of Life Sciences, Shanghai Normal University, Shanghai, China
| | - Xia Liu
- Maize Research Institute, Shandong Academy of Agricultural Sciences/National Engineering Laboratory of Wheat and Maize/Key Laboratory of Biology and Genetic Improvement of Maize in Northern Yellow-huai River Plain, Ministry of Agriculture, Jinan, China
| | - Guangmin Xia
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Huiyu Tian
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Cuiling Li
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
| | - Zhaojun Ding
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, China
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Pantoja-Benavides AD, Garces-Varon G, Restrepo-Díaz H. Foliar Growth Regulator Sprays Induced Tolerance to Combined Heat Stress by Enhancing Physiological and Biochemical Responses in Rice. FRONTIERS IN PLANT SCIENCE 2021; 12:702892. [PMID: 34367222 PMCID: PMC8343023 DOI: 10.3389/fpls.2021.702892] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 06/23/2021] [Indexed: 05/11/2023]
Abstract
Rice yield has decreased due to climate variability and change in Colombia. Plant growth regulators have been used as a strategy to mitigate heat stress in different crops. Therefore, this study aimed to evaluate the effect of foliar applications of four growth regulators [auxins (AUX), brassinosteroids (BR), cytokinins (CK), or gibberellins (GA)] on physiological (stomatal conductance, total chlorophyll content, Fv/Fm ratio, plant canopy temperature, and relative water content) and biochemical (Malondialdehyde (MDA) and proline contents) variables in two commercial rice genotypes exposed to combined heat stress (high day and nighttime temperatures). Two separate experiments were carried out using plants of two rice genotypes, Fedearroz 67 ("F67") and Fedearroz 2000 ("F2000") for the first and second experiments, respectively. Both trials were analyzed together as a series of experiments. The established treatments were as follows: absolute control (AC) (rice plants grown under optimal temperatures (30/25°C day/nighttime temperatures), heat stress control (SC) [rice plants only exposed to combined heat stress (40/30°C)], and stressed rice plants and sprayed twice (5 days before and after heat stress) with a plant growth regulator (stress+AUX, stress+BR, stress+CK, or stress+GA). The results showed that foliar CK sprays enhanced the total chlorophyll content in both cultivars (3.25 and 3.65 mg g-1 fresh weight for "F67" and "F2000" rice plants, respectively) compared to SC plants (2.36 and 2.56 mg g-1 fresh weight for "F67," and "F2000" rice plants, respectively). Foliar CK application also improved stomatal conductance mainly in "F2000" rice plants compared to their heat stress control (499.25 vs.150.60 mmol m-2s-1). Foliar BR or CK sprays reduced plant canopy temperature between 2 and 3°C and MDA content in plants under heat stress. The relative tolerance index suggested that foliar CK (97.69%), and BR (60.73%) applications helped to mitigate combined heat stress mainly in "F2000" rice plants. In conclusion, foliar BR or CK applications can be considered an agronomic strategy to help to ameliorate the negative effect of combined heat stress conditions on the physiological behavior of rice plants.
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Affiliation(s)
| | | | - Hermann Restrepo-Díaz
- Universidad Nacional de Colombia, Sede Bogotá, Facultad de Ciencias Agrarias, Departamento de Agronomía, Bogotá, Colombia
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