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Hu Q, Pan Y, Xia H, Yu K, Yao Y, Guan F. Species Identification of Caviar Based on Multiple DNA Barcoding. Molecules 2023; 28:5046. [PMID: 37446706 DOI: 10.3390/molecules28135046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 06/11/2023] [Accepted: 06/26/2023] [Indexed: 07/15/2023] Open
Abstract
This study aimed to explore the applicability of DNA barcoding for assessing the authenticity of caviar on the Chinese market. A set of universal COI primers and two sets of designed primers based on COI and D-loop genes were used to identify maternal species of samples from 21 batches of caviar. The results showed that the PCR products from three sets of primers had more than 98% similarity to the sequences in database. The COI gene could not distinguish sturgeons with closed genetic relationships, while D-loop gene could effectively improve the accuracy of DNA barcoding and was more suitable to the identification of interspecific sturgeon than the COI gene. The neighbor-joining dendrogram further confirmed the applicability and accuracy of COI and D-loop genes in identifying maternal relatives of caviar (Acipenser baerii/Acipenser gueldenstaedtii/Acipenser schrenckii/Huso dauricus/Huso huso). Despite the limitations of mitochondrial DNA in identifying hybrid sturgeon species, the presence of counterfeit caviar of non-sturgeon ingredients could be excluded. All the caviar samples were identified successfully as sturgeon species, but the mislabeling rate of species was 33.4%, indicating that there were illegal phenomena such as disorderly labeling, mislabeling, and adulteration on the market.
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Affiliation(s)
- Qingqing Hu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Yingqiu Pan
- Taizhou Food and Drug Inspection and Research Institute, Taizhou 318000, China
| | - Huili Xia
- Taizhou Food and Drug Inspection and Research Institute, Taizhou 318000, China
| | - Kexin Yu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Yian Yao
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Feng Guan
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
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2
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Ahmadifar E, Eslami M, Kalhor N, Zaretabar A, Mohammadzadeh S, Shahriari Moghadam M, Yousefi M, Ahmadifar M, Hoseinifar SH, Pusadee T, van Doan H. Effect of a diet enriched with sodium propionate on growth performance, antioxidant property, innate-adaptive immune response, and growth-related genes expression in critically endangered beluga sturgeon (Huso huso). FISH & SHELLFISH IMMUNOLOGY 2022; 125:101-108. [PMID: 35472403 DOI: 10.1016/j.fsi.2022.04.031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 03/03/2022] [Accepted: 04/21/2022] [Indexed: 06/14/2023]
Abstract
Organic acids are active substances required for improving the productivity and wellbeing of aquatic animals. Herein, the study investigated the effects of sodium propionate on growth performance, antioxidative and immune responses, and growth-related genes expression in beluga sturgeon (Huso huso). For eight weeks, fish fed sodium propionate at 0, 1.2, 2.5, and 5 g kg-1. The final weight, weight gain, and SGR were substantially increased while FCR decreased by dietary sodium propionate at 2.5 and 5 g kg-1 (P < 0.05). The expression of Growth hormone (GH) and insulin-like growth factor 1 (IGF-1) was markedly upregulated (P < 0.05) by dietary sodium propionate in the gills and livers of beluga. The highest mRNA level of GH and IGF-1 has been observed in fish fed a 2.5 g sodium propionate/kg diet. The red blood cells count, and hemoglobin level were meaningfully increased (P < 0.05) by 2.5 and 5 g sodium propionate/kg diet compared with 0 and 1.2 g kg-1 levels. Further, the hematocrit level was increased (P < 0.05) by a dietary 5 g sodium propionate/kg diet. The total protein level and lysozyme activity were meaningfully increased (P < 0.05) by 2.5 and 5 g sodium propionate/kg diet compared with 0 and 1.2 g kg-1 levels. The highest superoxide dismutase was observed in fish fed 2.5 g sodium propionate/kg diet. Catalase activity was significantly higher in fish fed 5 g kg-1 than 1.2 g kg-1. The glutathione peroxidase activity was markedly higher in fish fed 2.5, and 5 g kg-1 than fish fed control diet. The lowest malondialdehyde levels were observed in fish fed 1.2, and 2.5 g sodium propionate/kg diets. Moreover, the highest mucosal total protein, total immunoglobulin and lysozyme were recorded in fish fed 2.5, and 5 g sodium propionate/kg diets. The obtained results indicate that dietary sodium propionate is recommended at 2.5-5 g kg-1 to improve beluga sturgeon's growth performance, feed utilization, and wellbeing.
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Affiliation(s)
- Ehsan Ahmadifar
- Department of Fisheries, Faculty of Natural Resources, University of Zabol, Zabol, Iran.
| | | | - Naser Kalhor
- Department of Mesanchymal Stem Cell, Academic Center for Education, Culture and Research, Qom Branch, Qom, Iran
| | - Amine Zaretabar
- Fisheries Department, Faculty of Animal Sciences and Fisheries, Sari Agricultural Sciences and Natural Resources University, Sari, Iran
| | - Sedigheh Mohammadzadeh
- Fisheries Department, Faculty of Animal Sciences and Fisheries, Sari Agricultural Sciences and Natural Resources University, Sari, Iran
| | - Mohsen Shahriari Moghadam
- Department of Environmental Sciences, Faculty of Natural Resources, University of Zabol, Zabol, Iran
| | - Morteza Yousefi
- Department of Veterinary Medicine, Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St, Moscow 117198, Russian Federation
| | - Mehdi Ahmadifar
- Department of Stem Cell Biology and Technology of ACECR, Royan Institute, Cell Science Research Center, Collage of Stem Cell and Developmental Biology, Tehran, Iran
| | - Seyed Hossein Hoseinifar
- Department of Fisheries, Faculty of Fisheries and Environmental Sciences, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran.
| | - Tonapha Pusadee
- Department of Plant and Soil Sciences, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand; Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand
| | - Hien van Doan
- Department of Animal and Aquatic Sciences, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand; Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand.
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Pappalardo AM, Giuga M, Raffa A, Nania M, Rossitto L, Calogero GS, Ferrito V. COIBar-RFLP Molecular Strategy Discriminates Species and Unveils Commercial Frauds in Fishery Products. Foods 2022; 11:foods11111569. [PMID: 35681319 PMCID: PMC9180250 DOI: 10.3390/foods11111569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 05/20/2022] [Accepted: 05/24/2022] [Indexed: 12/03/2022] Open
Abstract
The DNA analysis is the best approach to authenticate species in seafood products and to unveil frauds based on species substitution. In this study, a molecular strategy coupling Cytochrome Oxidase I (COI) DNA barcoding with the consolidated methodology of Restriction Fragment Length Polymorphisms (RFLPs), named COIBar-RFLP, was applied for searching pattern of restriction enzyme digestion, useful to discriminate seven different fish species (juveniles of Engraulis encrasicolus and Sardina pilchardus sold in Italy as “bianchetto” and Aphia minuta sold as “rossetto”; icefish Neosalanx tangkahkeii; European perch, Perca fluviatilis and the Nile Perch, Lates niloticus; striped catfish, Pangasianodon hypophthalmus). A total of 30 fresh and frozen samples were processed for DNA barcoding, analyzed against a barcode library of COI sequences retrieved from GenBank, and validated for COIBar–RFLP analysis. Cases of misdescription were detected: 3 samples labeled as “bianchetto” were substituted by N. tangkahkeii (2 samples) and A. minuta (1 sample); 3 samples labeled as “persico reale” (P. fluviatilis) were substituted by L. niloticus and P. hypophthalmus. All species were simultaneously discriminated through the restriction pattern obtained with MspI enzyme. The results highlighted that the COIBar-RFLP could be an effective tool to authenticate fish in seafood products by responding to the emerging interest in molecular identification technologies.
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Affiliation(s)
- Anna Maria Pappalardo
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
| | - Marta Giuga
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
- Institute for the Study of Antropic Impact and Sustainability in the Marine Environment, IAS-CNR, 91021 Trapani, Italy
| | - Alessandra Raffa
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
| | - Marco Nania
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
| | - Luana Rossitto
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
| | - Giada Santa Calogero
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
| | - Venera Ferrito
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology “M. La Greca”, University of Catania, Via Androne 81, 95124 Catania, Italy; (A.M.P.); (M.G.); (A.R.); (M.N.); (L.R.); (G.S.C.)
- Correspondence: ; Tel.: +39-095-730-6030
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Real-time Fluorescence and Visual Colorimetric Loop–Mediated Isothermal Amplification Assays for the Rapid and Visual Identification of the Genus Diodon. FOOD ANAL METHOD 2022. [DOI: 10.1007/s12161-022-02307-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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5
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A Multistep DNA-Based Methodology for Accurate Authentication of Sturgeon Species. Foods 2022; 11:foods11071007. [PMID: 35407094 PMCID: PMC8998085 DOI: 10.3390/foods11071007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 03/25/2022] [Accepted: 03/26/2022] [Indexed: 11/21/2022] Open
Abstract
The sturgeons (order Acipenseriformes) are caviar producers and some of the most valuable fish species worldwide. Due to different reasons, wild populations are now at the brink of extinction. The high demand for caviar has led to the development of aquaculture for restocking and caviar production. Since the caviar from different species has different prices depending on the quality and attempts of commercial fraud based on species substitution have been found, correct species identification is more than necessary. We report a new multistep methodology for an accurate species identification based on both nuclear and mitochondrial markers. Our test integrates data from the analysis of microsatellites (Afu19, Afu34, Afu39, Afu54, Aox27, AoxD234, AnacC11 and AnacE4), nuclear gene markers (RPS7, vimentin and rhodopsin) and mtDNA barcoding to give a reliable molecular diagnostic for five sturgeon species (Huso huso, Acipenser stellatus, Acipenser ruthenus, Acipenser gueldenstaedtii and Acipenser baerii). In addition to species identification, our methodology allows the identification of bester, sterbe and best beluga hybrids, but also the identification of hybrids of unknown origin. This methodology has a good potential to contribute to the conservation of highly threatened sturgeon populations and also to the traceability of their products.
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Zhang X, Tinacci L, Xie S, Wang J, Ying X, Wen J, Armani A. Caviar products sold on Chinese Business to customer (B2C) online platforms: Labelling assessment supported by molecular identification. Food Control 2022. [DOI: 10.1016/j.foodcont.2021.108370] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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7
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Fish intended for human consumption: from DNA barcoding to a next-generation sequencing (NGS)-based approach. Curr Opin Food Sci 2021. [DOI: 10.1016/j.cofs.2021.05.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Geographic Pattern of Sushi Product Misdescription in Italy-A Crosstalk between Citizen Science and DNA Barcoding. Foods 2021; 10:foods10040756. [PMID: 33918119 PMCID: PMC8066630 DOI: 10.3390/foods10040756] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Revised: 03/22/2021] [Accepted: 03/27/2021] [Indexed: 01/19/2023] Open
Abstract
The food safety of sushi and the health of consumers are currently of high concern for food safety agencies across the world due to the globally widespread consumption of these products. The microbiological and toxicological risks derived from the consumption of raw fish and seafood have been highlighted worldwide, while the practice of species substitution in sushi products has attracted the interest of researchers more than food safety agencies. In this study, samples of sushi were processed for species authentication using the Cytochrome Oxidase I (COI) gene as a DNA barcode. The approach of Citizen Science was used to obtain the sushi samples by involving people from eighteen different Italian cities (Northern, Central and Southern Italy). The results indicate that a considerable rate of species substitution exists with a percentage of misdescription ranging from 31.8% in Northern Italy to 40% in Central Italy. The species most affected by replacement was Thunnus thynnus followed by the flying fish roe substituted by eggs of Mallotus villosus. These results indicate that a standardization of fish market names should be realized at the international level and that the indication of the scientific names of species should be mandatory for all products of the seafood supply chain.
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Farag MA, Abib B, Tawfik S, Shafik N, Khattab AR. Caviar and fish roe substitutes: Current status of their nutritive value, bio-chemical diversity, authenticity and quality control methods with future perspectives. Trends Food Sci Technol 2021. [DOI: 10.1016/j.tifs.2021.02.015] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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10
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Wu HY, Chan KT, But GWC, Shaw PC. Assessing the reliability of medicinal Dendrobium sequences in GenBank for botanical species identification. Sci Rep 2021; 11:3439. [PMID: 33564041 PMCID: PMC7873228 DOI: 10.1038/s41598-021-82385-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 01/19/2021] [Indexed: 12/04/2022] Open
Abstract
DNA-based method is a promising tool in species identification and is widely used in various fields. DNA barcoding method has already been included in different pharmacopoeias for identification of medicinal materials or botanicals. Accuracy and validity of DNA-based methods rely on the accuracy and taxonomic reliability of the DNA sequences in the database to be compared against. Here we evaluated the annotation quality and taxonomic reliability of selected barcode loci (rbcL, matK, psbA-trnH, trnL-trnF and ITS) of 41 medicinal Dendrobium species downloaded from GenBank. Annotations of most accessions are incomplete. Only 53.06% of the 2041 accessions downloaded contain a reference to a voucher specimen. Only 31.60% and 4.8% of the entries are annotated with country of origin and collector or assessor, respectively. Taxonomic reliability of the sequences was evaluated by a Megablast search based on similarity to sequences submitted by other research groups. A small number of sequences (211, 7.14%) was regarded as highly doubted. Moreover, 10 out of 60 complete chloroplast genomes contain highly doubted sequences. Our findings suggest that sequences of GenBank should be used with caution for species-level identification. The scientific community should provide more important information regarding identity and traceability of the sample when they deposit sequences to public databases.
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Affiliation(s)
- Hoi-Yan Wu
- Li Dak Sum Yip Yio Chin R&D Centre for Chinese Medicine, The Chinese University of Hong Kong, Hong Kong, China
| | - Kwun-Tin Chan
- Li Dak Sum Yip Yio Chin R&D Centre for Chinese Medicine, The Chinese University of Hong Kong, Hong Kong, China
- School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Grace Wing-Chiu But
- School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Pang-Chui Shaw
- Li Dak Sum Yip Yio Chin R&D Centre for Chinese Medicine, The Chinese University of Hong Kong, Hong Kong, China.
- State Key Laboratory of Research on Bioactivities and Clinical Applications of Medicinal Plants (The Chinese University of Hong Kong) and Institute of Chinese Medicine, The Chinese University of Hong Kong, Hong Kong, China.
- School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China.
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Prida V, Sepúlveda M, Quezada-Romegialli C, Harrod C, Gomez-Uchida D, Cid B, Canales-Aguirre CB. Chilean Salmon Sushi: Genetics Reveals Product Mislabeling and a Lack of Reliable Information at the Point of Sale. Foods 2020; 9:E1699. [PMID: 33228244 PMCID: PMC7699462 DOI: 10.3390/foods9111699] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 11/14/2020] [Accepted: 11/16/2020] [Indexed: 11/16/2022] Open
Abstract
Species diagnosis is essential to assess the level of mislabeling or misnamed seafood products such as sushi. In Chile, sushi typically includes salmon as the main ingredient, but species used are rarely declared on the menu. In order to identify which species are included in the Chilean sushi market, we analyzed 84 individual sushi rolls sold as "salmon" from sushi outlets in ten cities across Chile. Using a polymerase chain reaction-restriction fragment length polymorphism protocol (PCR-RFLP), we identified mislabeled and misnamed products. Atlantic salmon was the most common salmonid fish used in sushi, followed by coho salmon, rainbow trout, and Chinook salmon. We found a total of 23% and 18% of the products were mislabeled and misnamed, respectively. In 64% of cases, the salesperson selling the product could not identify the species. We also identified the use of wild-captured Chinook salmon samples from a naturalized population. Our results provide a first indication regarding species composition in Chilean sushi, a quantification of mislabeling and the level of misinformation declared by sales people to consumers. Finally, considering that Chinook salmon likely originates from a non-licensed origin and that sushi is an uncooked product, proper identification in the food production chain may have important consequences for the health of consumers.
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Affiliation(s)
- Valentina Prida
- Centro i~mar, Universidad de Los Lagos, Puerto Montt 5480000, Chile;
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
| | - Maritza Sepúlveda
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
- Centro de Investigación y Gestión de Recursos Naturales (CIGREN), Instituto de Biología, Facultad de Ciencias, Universidad de Valparaíso, Playa Ancha, Valparaíso 2340000, Chile
| | - Claudio Quezada-Romegialli
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
- Departamento de Biología, Facultad de Ciencias Naturales y Exactas, Universidad de Valparaíso, Playa Ancha, Valparaíso 2340000, Chile
| | - Chris Harrod
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
- Instituto de Ciencias Naturales Alexander von Humboldt, Universidad de Antofagasta, Antofagasta 1271155, Chile
| | - Daniel Gomez-Uchida
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
- Departamento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción 4070032, Chile
| | - Beatriz Cid
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
- Departamento de Sociología, Facultad de Ciencias Sociales, Universidad de Concepción, Concepción 4070032, Chile
| | - Cristian B. Canales-Aguirre
- Centro i~mar, Universidad de Los Lagos, Puerto Montt 5480000, Chile;
- Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción 4030000, Chile; (M.S.); (C.Q.-R.); (C.H.); (D.G.-U.); (B.C.)
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DNA-based techniques for seafood species authentication. ADVANCES IN FOOD AND NUTRITION RESEARCH 2020; 95:207-255. [PMID: 33745513 DOI: 10.1016/bs.afnr.2020.09.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Global trade of seafood has increased in the last decade, leading to significant concerns associated with seafood fraud. Seafood fraud involves the intentional misrepresentation of fish or shellfish for the purpose of economic gain and includes acts such as species substitution, illegal transshipment, overtreatment/short weighting, and mislabeling country of origin or production method. These fraudulent acts have had economic, environmental, and public health consequences on a global level. DNA-based techniques for seafood authentication are utilized by regulatory agencies and can be employed as part of a food fraud risk mitigation plan. This chapter will focus specifically on the use of DNA-based methods for the detection of seafood species substitution. Various methods have been developed for DNA-based species identification of seafood, including polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), species-specific PCR, real-time PCR, Sanger sequencing, microarrays, and high-resolution melting (HRM). Emerging techniques for seafood authentication include droplet digital PCR, isothermal amplification, PCR-enzyme-linked immunosorbent assay (ELISA), and high-throughput or next-generation sequencing. Some of these DNA-based methods target specific species, such as real-time PCR and droplet digital PCR, while other methods allow for simultaneous differentiation of a wide range of fish species, including Sanger sequencing and high-throughput sequencing. This chapter will begin with an introduction on seafood fraud and species substitution, followed by an analysis of the main DNA-based authentication methods and emerging techniques for species identification.
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Rossel S, Barco A, Kloppmann M, Martínez Arbizu P, Huwer B, Knebelsberger T. Rapid species level identification of fish eggs by proteome fingerprinting using MALDI-TOF MS. J Proteomics 2020; 231:103993. [PMID: 32971306 DOI: 10.1016/j.jprot.2020.103993] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 08/27/2020] [Accepted: 09/18/2020] [Indexed: 11/29/2022]
Abstract
Quantifying spawning biomass of commercially relevant fish species is important to generate fishing quotas. This will mostly rely on the annual or daily production of fish eggs. However, these have to be identified precisely to species level to obtain a reliable estimate of offspring production of the different species. Because morphological identification can be very difficult, recent developments are heading towards application of molecular tools. Methods such as COI barcoding have long handling times and cause high costs for single specimen identifications. In order to test MALDI-TOF MS, a rapid and cost-effective alternative for species identification, we identified fish eggs using COI barcoding and used the same specimens to set up a MALDI-TOF MS reference library. This library, constructed from two different MALDI-TOF MS instruments, was then used to identify unknown eggs from a different sampling occasion. By using a line of evidence from hierarchical clustering and different supervised identification approaches we obtained concordant species identifications for 97.5% of the unknown fish eggs, proving MALDI-TOF MS a good tool for rapid species level identification of fish eggs. At the same time we point out the necessity of adjusting identification scores of supervised methods for identification to optimize identification success. SIGNIFICANCE: Fish products are commercially highly important and many societies rely on them as a major food resource. Over many decades stocks of various relevant fish species have been reduced due to unregulated overfishing. Nowadays, to avoid overfishing and threatening of important fish species, fish stocks are regularly monitored. One component of this monitoring is the monitoring of spawning stock sizes. Whereas this is highly dependent on correct species identification of fish eggs, morphological identification is difficult because of lack of morphological features.
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Affiliation(s)
- Sven Rossel
- Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Südstrand 44, 26382 Wilhelmshaven, Germany.
| | - Andrea Barco
- biome-ID, Südstrand 44, 26382 Wilhelmshaven, Germany
| | - Matthias Kloppmann
- Thünen Institut für Seefischerei, Herwigstraße 31, 27572, Bremerhaven, Germany
| | - Pedro Martínez Arbizu
- Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Südstrand 44, 26382 Wilhelmshaven, Germany
| | - Bastian Huwer
- Technical University of Denmark, National Institute of Aquatic Resources, Kemitorvet, Bygning 202, 2800 Kgs. Lyngby, Denmark
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Pappalardo AM, Copat C, Raffa A, Rossitto L, Grasso A, Fiore M, Ferrante M, Ferrito V. Fish-Based Baby Food Concern-From Species Authentication to Exposure Risk Assessment. Molecules 2020; 25:E3961. [PMID: 32878026 PMCID: PMC7504785 DOI: 10.3390/molecules25173961] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 08/25/2020] [Accepted: 08/28/2020] [Indexed: 12/11/2022] Open
Abstract
In this work, two different but complementary approaches were used to evaluate the reliability of fish-based baby foods as a source of safe nourishment for babies. More specifically, barcoding analysis based on the Cytochrome Oxidase I sequences was used for fish species authentication and an analysis of metal/metalloid levels was performed to estimate the exposure risk assessment derived from consumption of selected fish-based baby food in infants and toddlers. COI DNA barcoding revealed that in three samples the species detected did not match the common name of the species shown on the label. In particular, G. chalcogrammus and M. australis were found in place of M. merluccius and O. mykiss was found in place of S. salar. The analysis of exposure risk assessment indicated a low risk for developing chronic systemic and carcinogenic effects in infants and toddler, under an exposure scenario based on daily consumption of a single box of fish-based baby food. However, it is important to highlight that in order to provide a comprehensive risk assessment it would be important to supplement the levels of exposure resulting from the total diet. Overall, our results suggest that more attention should be paid by authorities to ensure the safety of food for infants and toddlers.
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Affiliation(s)
- Anna Maria Pappalardo
- Department of Biological, Geological and Environmental Sciences–Section of Animal Biology “M. La Greca”, University of Catania, 95124 Catania, Italy; (A.R.); (L.R.)
| | - Chiara Copat
- Department of Medical, Surgical Sciences and Advanced Technologies “G.F. Ingrassia”, Hygiene and Public Health, University of Catania, I-95123 Catania, Italy; (C.C.); (A.G.); (M.F.); (M.F.)
| | - Alessandra Raffa
- Department of Biological, Geological and Environmental Sciences–Section of Animal Biology “M. La Greca”, University of Catania, 95124 Catania, Italy; (A.R.); (L.R.)
| | - Luana Rossitto
- Department of Biological, Geological and Environmental Sciences–Section of Animal Biology “M. La Greca”, University of Catania, 95124 Catania, Italy; (A.R.); (L.R.)
| | - Alfina Grasso
- Department of Medical, Surgical Sciences and Advanced Technologies “G.F. Ingrassia”, Hygiene and Public Health, University of Catania, I-95123 Catania, Italy; (C.C.); (A.G.); (M.F.); (M.F.)
| | - Maria Fiore
- Department of Medical, Surgical Sciences and Advanced Technologies “G.F. Ingrassia”, Hygiene and Public Health, University of Catania, I-95123 Catania, Italy; (C.C.); (A.G.); (M.F.); (M.F.)
| | - Margherita Ferrante
- Department of Medical, Surgical Sciences and Advanced Technologies “G.F. Ingrassia”, Hygiene and Public Health, University of Catania, I-95123 Catania, Italy; (C.C.); (A.G.); (M.F.); (M.F.)
| | - Venera Ferrito
- Department of Biological, Geological and Environmental Sciences–Section of Animal Biology “M. La Greca”, University of Catania, 95124 Catania, Italy; (A.R.); (L.R.)
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15
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Fernandes TJR, Amaral JS, Mafra I. DNA barcode markers applied to seafood authentication: an updated review. Crit Rev Food Sci Nutr 2020; 61:3904-3935. [DOI: 10.1080/10408398.2020.1811200] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
| | - Joana S. Amaral
- Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Bragança, Portugal
| | - Isabel Mafra
- REQUIMTE-LAQV, Faculdade de Farmácia, Universidade do Porto, Porto, Portugal
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16
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Lopez A, Vasconi M, Bellagamba F, Mentasti T, Pazzaglia M, Moretti VM. Volatile Organic Compounds Profile in White Sturgeon (Acipenser transmontanus) Caviar at Different Stages of Ripening by Multiple Headspace Solid Phase Microextraction. Molecules 2020; 25:molecules25051074. [PMID: 32121013 PMCID: PMC7179139 DOI: 10.3390/molecules25051074] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Revised: 02/24/2020] [Accepted: 02/25/2020] [Indexed: 11/16/2022] Open
Abstract
Caviar is considered a delicacy by luxury product consumers, but few data are available about its flavour chemistry to date. In this study, a multiple headspace-solid phase microextraction (MHS-SPME) followed by gas chromatography and mass spectrometry (GC-MS) approach was developed and employed to identify and quantitatively estimate key volatile organic compounds (VOCs) representative in white sturgeon (A. transmontanus) caviar at five different stages of ripening: raw eggs (t0), after 60 days (t1), 120 days (t2), 180 days (t3), and 240 days (t4) of ripening. The method showed the ability to detect and estimate the quantity of 25 flavour compounds, without any severe alteration of the matrix before the analysis and in a short time. The VOCs detected as representative in caviar samples were primarily aldehydes and alcohols, already well known as responsible of fresh fish and seafood flavours, and mainly deriving from lipid peroxidation processes and microbial activity against lipids and amino acids. We found a significant (p < 0.01) increase in the amount of total aldehydes within t0 (29.64 ng/g) and t4 (121.96 ng/g); moreover, an interesting, great arise of 3-hydroxy-2-butanone at the final stage of storage (48.17 ng/g) was recorded. Alcohols were not detected in raw eggs (t0) and then a decrease from t1 (17.77 ng/g) to t4 (10.18 ng/g) was recorded in their amount, with no statistical significance.
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Affiliation(s)
- Annalaura Lopez
- Department of Veterinary Medicine – Università degli Studi di Milano, Via dell’Università 6, 26900 Lodi, Italy; (M.V.); (F.B.); (T.M.); (V.M.M.)
- Correspondence: ; Tel.:+39−0250315759
| | - Mauro Vasconi
- Department of Veterinary Medicine – Università degli Studi di Milano, Via dell’Università 6, 26900 Lodi, Italy; (M.V.); (F.B.); (T.M.); (V.M.M.)
| | - Federica Bellagamba
- Department of Veterinary Medicine – Università degli Studi di Milano, Via dell’Università 6, 26900 Lodi, Italy; (M.V.); (F.B.); (T.M.); (V.M.M.)
| | - Tiziana Mentasti
- Department of Veterinary Medicine – Università degli Studi di Milano, Via dell’Università 6, 26900 Lodi, Italy; (M.V.); (F.B.); (T.M.); (V.M.M.)
| | - Mario Pazzaglia
- Agroittica Lombarda S.p.A. - Via J.F. Kennedy, 25012 Calvisano (BS), Italy;
| | - Vittorio Maria Moretti
- Department of Veterinary Medicine – Università degli Studi di Milano, Via dell’Università 6, 26900 Lodi, Italy; (M.V.); (F.B.); (T.M.); (V.M.M.)
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17
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Ferrito V, Raffa A, Rossitto L, Federico C, Saccone S, Pappalardo AM. Swordfish or Shark Slice? A Rapid Response by COIBar-RFLP. Foods 2019; 8:foods8110537. [PMID: 31683903 PMCID: PMC6915651 DOI: 10.3390/foods8110537] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 10/21/2019] [Accepted: 10/28/2019] [Indexed: 11/19/2022] Open
Abstract
Market transparency is in strong demand by consumers, and the authentication of species is an important step for seafood traceability. In this study, a simple molecular strategy, COIBar–RFLP (cytochrome oxidase I barcode–restriction fragment length polymorphism), is proposed to unveil commercial fraud based on the practice of species substitution in the swordfish trade. In particular, COI barcoding allowed the identification of the species Prionace glauca, Mustelus mustelus, and Oxynotus centrina in slices labeled as Xiphias gladius. Furthermore, the enzymatic digestion of COI amplicons using the MboI restriction endonuclease allowed the simultaneous discrimination of the four species. Interestingly, an intraspecific differential MboI pattern was obtained for the swordfish samples. This pattern was useful to differentiate the two different clades revealed in this species by phylogenetic analyses using several molecular markers. These results indicate the need to strengthen regulations and define molecular tools for combating the occurrence of fraud along the seafood supply chain and show that COIBar–RFLP could become a standardized molecular tool to assess seafood authenticity.
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Affiliation(s)
- Venera Ferrito
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology "M. La Greca", University of Catania, Via Androne 81, 95124 Catania, Italy.
| | - Alessandra Raffa
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology "M. La Greca", University of Catania, Via Androne 81, 95124 Catania, Italy.
| | - Luana Rossitto
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology "M. La Greca", University of Catania, Via Androne 81, 95124 Catania, Italy.
| | - Concetta Federico
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology "M. La Greca", University of Catania, Via Androne 81, 95124 Catania, Italy.
| | - Salvatore Saccone
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology "M. La Greca", University of Catania, Via Androne 81, 95124 Catania, Italy.
| | - Anna Maria Pappalardo
- Department of Biological, Geological and Environmental Sciences, Section of Animal Biology "M. La Greca", University of Catania, Via Androne 81, 95124 Catania, Italy.
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