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Voltura EV, Tracy JL, Heatley JJ, Kiacz S, Brightsmith DJ, Filippi AM, Franco JG, Coulson R. Modelling Red-Crowned Parrot (Psittaciformes: Amazona viridigenalis [Cassin, 1853]) distributions in the Rio Grande Valley of Texas using elevation and vegetation indices and their derivatives. PLoS One 2023; 18:e0294118. [PMID: 38055729 PMCID: PMC10699612 DOI: 10.1371/journal.pone.0294118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 10/26/2023] [Indexed: 12/08/2023] Open
Abstract
Texas Rio Grande Valley Red-crowned Parrots (Psittaciformes: Amazona viridigenalis [Cassin, 1853]) primarily occupy vegetated urban rather than natural areas. We investigated the utility of raw vegetation indices and their derivatives as well as elevation in modelling the Red-crowned parrot's general use, nest site, and roost site habitat distributions. A feature selection algorithm was employed to create and select an ensemble of fine-scale, top-ranked MaxEnt models from optimally-sized, decorrelated subsets of four to seven of 199 potential variables. Variables were ranked post hoc by frequency of appearance and mean permutation importance in top-ranked models. Our ensemble models accurately predicted the three distributions of interest ([Formula: see text] Area Under the Curve [AUC] = 0.904-0.969). Top-ranked variables for different habitat distribution models included: (a) general use-percent cover of preferred ranges of entropy texture of Normalized Difference Vegetation Index (NDVI) values, entropy and contrast textures of NDVI, and elevation; (b) nest site-entropy textures of NDVI and Green-Blue NDVI, and percent cover of preferred range of entropy texture of NDVI values; (c) roost site-percent cover of preferred ranges of entropy texture of NDVI values, contrast texture of NDVI, and entropy texture of Green-Red Normalized Difference Index. Texas Rio Grande Valley Red-crowned Parrot presence was associated with urban areas with high heterogeneity and randomness in the distribution of vegetation and/or its characteristics (e.g., arrangement, type, structure). Maintaining existing preferred vegetation types and incorporating them into new developments should support the persistence of Red-crowned Parrots in southern Texas.
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Affiliation(s)
- Elise Varaela Voltura
- Department of Veterinary Pathobiology, Texas A&M University, College Station, Texas, United States of America
- Schubot Center for Avian Health, Texas A&M University, College Station, Texas, United States of America
| | - James L. Tracy
- Department of Entomology, Texas A&M University, College Station, Texas, United States of America
| | - J. Jill Heatley
- Schubot Center for Avian Health, Texas A&M University, College Station, Texas, United States of America
- Department of Small Animal Clinical Sciences, Texas A&M University, College Station, Texas, United States of America
| | - Simon Kiacz
- Schubot Center for Avian Health, Texas A&M University, College Station, Texas, United States of America
- Department of Ecology and Evolutionary Biology, Texas A&M University, College Station, Texas, United States of America
| | - Donald J. Brightsmith
- Department of Veterinary Pathobiology, Texas A&M University, College Station, Texas, United States of America
- Schubot Center for Avian Health, Texas A&M University, College Station, Texas, United States of America
| | - Anthony M. Filippi
- Department of Geography, Texas A&M University, College Station, Texas, United States of America
| | - Jesús G. Franco
- Rio Grande Joint Venture, American Bird Conservancy, McAllen, Texas, United States of America
| | - Robert Coulson
- Department of Entomology, Texas A&M University, College Station, Texas, United States of America
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Assessing Vegetation Decline Due to Pollution from Solid Waste Management by a Multitemporal Remote Sensing Approach. REMOTE SENSING 2022. [DOI: 10.3390/rs14020428] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Nowadays, the huge production of Municipal Solid Waste (MSW) is one of the most strongly felt environmental issues. Consequently, the European Union (EU) delivers laws and regulations for better waste management, identifying the essential requirements for waste disposal operations and the characteristics that make waste hazardous to human health and the environment. In Italy, environmental regulations define, among other things, the characteristics of sites to be classified as “potentially contaminated”. From this perspective, the Basilicata region is currently one of the Italian regions with the highest number of potentially polluted sites in proportion to the number of inhabitants. This research aimed to identify the possible effects of potentially toxic element (PTE) pollution due to waste disposal activities in three “potentially contaminated” sites in southern Italy. The area was affected by a release of inorganic pollutants with values over the thresholds ruled by national/European legislation. Potential physiological efficiency variations of vegetation were analyzed through the multitemporal processing of satellite images. Landsat 5 Thematic Mapper (TM) and Landsat 8 Operational Land Imager (OLI) images were used to calculate the trend in the Normalized Difference Vegetation Index (NDVI) over the years. The multitemporal trends were analyzed using the median of the non-parametric Theil–Sen estimator. Finally, the Mann–Kendall test was applied to evaluate trend significance featuring areas according to the contamination effects on investigated vegetation. The applied procedure led to the exclusion of significant effects on vegetation due to PTEs. Thus, waste disposal activities during previous years do not seem to have significantly affected vegetation around targeted sites.
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Comparative Analysis of GF-1 and HJ-1 Data to Derive the Optimal Scale for Monitoring Heavy Metal Stress in Rice. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:ijerph15030461. [PMID: 29509724 PMCID: PMC5877006 DOI: 10.3390/ijerph15030461] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 03/01/2018] [Accepted: 03/04/2018] [Indexed: 12/04/2022]
Abstract
Remote sensing can actively monitor heavy metal contamination in crops, but with the increase of satellite sensors, the optimal scale for monitoring heavy metal stress in rice is still unknown. This study focused on identifying the optimal scale by comparing the ability to detect heavy metal stress in rice at various spatial scales. The 2 m, 8 m, and 16 m resolution GF-1 (China) data and the 30 m resolution HJ-1 (China) data were used to invert leaf area index (LAI). The LAI was the input parameter of the World Food Studies (WOFOST) model, and we obtained the dry weight of storage organs (WSO) and dry weight of roots (WRT) through the assimilation method; then, the mass ratio of rice storage organs and roots (SORMR) was calculated. Through the comparative analysis of SORMR at each spatial scale of data, we determined the optimal scale to monitor heavy metal stress in rice. The following conclusions were drawn: (1) SORMR could accurately and effectively monitor heavy metal stress; (2) the 8 m and 16 m images from GF-1 were suitable for monitoring heavy metal stress in rice; (3) 16 m was considered the optimal scale to assess heavy metal stress in rice.
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Liu S, Liu X, Liu M, Wu L, Ding C, Huang Z. Extraction of Rice Phenological Differences under Heavy Metal Stress Using EVI Time-Series from HJ-1A/B Data. SENSORS 2017; 17:s17061243. [PMID: 28556819 PMCID: PMC5492372 DOI: 10.3390/s17061243] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Revised: 05/03/2017] [Accepted: 05/26/2017] [Indexed: 11/16/2022]
Abstract
An effective method to monitor heavy metal stress in crops is of critical importance to assure agricultural production and food security. Phenology, as a sensitive indicator of environmental change, can respond to heavy metal stress in crops and remote sensing is an effective method to detect plant phenological changes. This study focused on identifying the rice phenological differences under varied heavy metal stress using EVI (enhanced vegetation index) time-series, which was obtained from HJ-1A/B CCD images and fitted with asymmetric Gaussian model functions. We extracted three phenological periods using first derivative analysis: the tillering period, heading period, and maturation period; and constructed two kinds of metrics with phenological characteristics: date-intervals and time-integrated EVI, to explore the rice phenological differences under mild and severe stress levels. Results indicated that under severe stress the values of the metrics for presenting rice phenological differences in the experimental areas of heavy metal stress were smaller than the ones under mild stress. This finding represents a new method for monitoring heavy metal contamination through rice phenology.
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Affiliation(s)
- Shuyuan Liu
- School of Information Engineering, China University of Geosciences, Beijing 100083, China.
| | - Xiangnan Liu
- School of Information Engineering, China University of Geosciences, Beijing 100083, China.
| | - Meiling Liu
- School of Information Engineering, China University of Geosciences, Beijing 100083, China.
| | - Ling Wu
- School of Information Engineering, China University of Geosciences, Beijing 100083, China.
| | - Chao Ding
- School of Information Engineering, China University of Geosciences, Beijing 100083, China.
| | - Zhi Huang
- School of Information Engineering, China University of Geosciences, Beijing 100083, China.
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Mapping Winter Wheat with Multi-Temporal SAR and Optical Images in an Urban Agricultural Region. SENSORS 2017; 17:s17061210. [PMID: 28587066 PMCID: PMC5492115 DOI: 10.3390/s17061210] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Revised: 05/21/2017] [Accepted: 05/21/2017] [Indexed: 12/12/2022]
Abstract
Winter wheat is the second largest food crop in China. It is important to obtain reliable winter wheat acreage to guarantee the food security for the most populous country in the world. This paper focuses on assessing the feasibility of in-season winter wheat mapping and investigating potential classification improvement by using SAR (Synthetic Aperture Radar) images, optical images, and the integration of both types of data in urban agricultural regions with complex planting structures in Southern China. Both SAR (Sentinel-1A) and optical (Landsat-8) data were acquired, and classification using different combinations of Sentinel-1A-derived information and optical images was performed using a support vector machine (SVM) and a random forest (RF) method. The interference coherence and texture images were obtained and used to assess the effect of adding them to the backscatter intensity images on the classification accuracy. The results showed that the use of four Sentinel-1A images acquired before the jointing period of winter wheat can provide satisfactory winter wheat classification accuracy, with an F1 measure of 87.89%. The combination of SAR and optical images for winter wheat mapping achieved the best F1 measure-up to 98.06%. The SVM was superior to RF in terms of the overall accuracy and the kappa coefficient, and was faster than RF, while the RF classifier was slightly better than SVM in terms of the F1 measure. In addition, the classification accuracy can be effectively improved by adding the texture and coherence images to the backscatter intensity data.
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Estimating FAPAR of Rice Growth Period Using Radiation Transfer Model Coupled with the WOFOST Model for Analyzing Heavy Metal Stress. REMOTE SENSING 2017. [DOI: 10.3390/rs9050424] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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