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Jang G, Kim DW, Park WP, Kim HJ, Chung YS. Heterogeneity Assessment of Kenaf Breeding Field through Spatial Dependence Analysis on Crop Growth Status Map Derived by Unmanned Aerial Vehicle. PLANTS (BASEL, SWITZERLAND) 2023; 12:1638. [PMID: 37111861 PMCID: PMC10144067 DOI: 10.3390/plants12081638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Revised: 04/11/2023] [Accepted: 04/11/2023] [Indexed: 06/19/2023]
Abstract
The investigation of quantitative phenotypic traits resulting from the interaction between targeted genotypic traits and environmental factors is essential for breeding selection. Therefore, plot-wise controlled environmental factors must be invariable for accurate identification of phenotypes. However, the assumption of homogeneous variables within the open-field is not always accepted, and requires a spatial dependence analysis to determine whether site-specific environmental factors exist. In this study, spatial dependence within the kenaf breeding field was assessed in a geo-tagged height map derived from an unmanned aerial vehicle (UAV). Local indicators of spatial autocorrelation (LISA) were applied to the height map using Geoda software, and the LISA map was generated in order to recognize the existence of kenaf height status clusters. The spatial dependence of the breeding field used in this study appeared in a specific region. The cluster pattern was similar to the terrain elevation pattern of this field and highly correlated with drainage capacity. The cluster pattern could be utilized to design random blocks based on regions that have similar spatial dependence. We confirmed the potential of spatial dependence analysis on a crop growth status map, derived by UAV, for breeding strategy design with a tight budget.
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Affiliation(s)
- Gyujin Jang
- Department of Biosystems Engineering, Seoul National University, Seoul 08826, Republic of Korea
- Integrated Major in Global Smart Farm, Seoul National University, Seoul 08826, Republic of Korea
| | - Dong-Wook Kim
- Department of Biosystems Engineering, Seoul National University, Seoul 08826, Republic of Korea
| | - Won-Pyo Park
- Department of Plant Resources and Environment, Jeju National University, Jeju 63243, Republic of Korea
| | - Hak-Jin Kim
- Department of Biosystems Engineering, Seoul National University, Seoul 08826, Republic of Korea
- BrainKorea21 Global Smart Farm Educational Research Center, Seoul National University, Seoul 08826, Republic of Korea
| | - Yong-Suk Chung
- Department of Plant Resources and Environment, Jeju National University, Jeju 63243, Republic of Korea
- Bio-Resources and Computing Research Center, Jeju National University, Jeju 63243, Republic of Korea
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Zang J, Jin S, Zhang S, Li Q, Mu Y, Li Z, Li S, Wang X, Su Y, Jiang D. Field-measured canopy height may not be as accurate and heritable as believed: evidence from advanced 3D sensing. PLANT METHODS 2023; 19:39. [PMID: 37009892 PMCID: PMC10069135 DOI: 10.1186/s13007-023-01012-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Accepted: 03/21/2023] [Indexed: 06/19/2023]
Abstract
Canopy height (CH) is an important trait for crop breeding and production. The rapid development of 3D sensing technologies shed new light on high-throughput height measurement. However, a systematic comparison of the accuracy and heritability of different 3D sensing technologies is seriously lacking. Moreover, it is questionable whether the field-measured height is as reliable as believed. This study uncovered these issues by comparing traditional height measurement with four advanced 3D sensing technologies, including terrestrial laser scanning (TLS), backpack laser scanning (BLS), gantry laser scanning (GLS), and digital aerial photogrammetry (DAP). A total of 1920 plots covering 120 varieties were selected for comparison. Cross-comparisons of different data sources were performed to evaluate their performances in CH estimation concerning different CH, leaf area index (LAI), and growth stage (GS) groups. Results showed that 1) All 3D sensing data sources had high correlations with field measurement (r > 0.82), while the correlations between different 3D sensing data sources were even better (r > 0.87). 2) The prediction accuracy between different data sources decreased in subgroups of CH, LAI, and GS. 3) Canopy height showed high heritability from all datasets, and 3D sensing datasets had even higher heritability (H2 = 0.79-0.89) than FM (field measurement) (H2 = 0.77). Finally, outliers of different datasets are analyzed. The results provide novel insights into different methods for canopy height measurement that may ensure the high-quality application of this important trait.
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Affiliation(s)
- Jingrong Zang
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shichao Jin
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Songyin Zhang
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Qing Li
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yue Mu
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ziyu Li
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shaochen Li
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xiao Wang
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yanjun Su
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Dong Jiang
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Collaborative Innovation Centre for Modern Crop Production Co-Sponsored By Province and Ministry, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
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Wu DH, Chen CT, Yang MD, Wu YC, Lin CY, Lai MH, Yang CY. Controlling the lodging risk of rice based on a plant height dynamic model. BOTANICAL STUDIES 2022; 63:25. [PMID: 36008613 PMCID: PMC9411474 DOI: 10.1186/s40529-022-00356-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 08/14/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Rice is a key global food crop. Rice lodging causes a reduction in plant height and crop yield, and rice is prone to lodging in the late growth stage because of panicle initiation. We used two water irrigation modes and four fertilizer application intervals to investigate the relationship between lodging and various cultivation conditions over 2 years. RESULTS Plant height data were collected and combined with aerial images, revealing that rice lodging was closely related to the nitrogen fertilizer content. The aerial images demonstrated that lodging mainly occurred in the fields treated with a high-nitrogen fertilizer, and analysis of variance revealed that plant height was signifi-cantly affected by nitrogen fertilizer. These results demonstrated that rice plant height in the booting stage was significantly positively correlated with the lodging results (r = 0.67) and nega-tively correlated with yield (r = - 0.46). If the rice plant height in the booting stage exceeded 70.7 cm and nitrogen fertilizer was continuously applied, according to the predicted growing curve of plant height, the plant would be at risk of lodging. Results showed more rainfall accumulated in the later stage of rice growth accompanied by strong instantaneous gusts, the risk of lodging in-creased. CONCLUSION The results provide predictions that can be applied in intelligent production and lodging risk management, and they form the basis of cultivation management and response policies for each growth period.
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Affiliation(s)
- Dong-Hong Wu
- Crop Science Division, Taiwan Agricultural Research Institute, Council of Agriculture, Taichung, 413008 Taiwan
| | - Chung-Tse Chen
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40227 Taiwan
| | - Ming-Der Yang
- Department of Civil Engineering, and Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung, 40227 Taiwan
- Pervasive AI Research (PAIR) Labs, Hsinchu, 30010 Taiwan
- Smart Sustainable New Agriculture Research Center (SMARTer), National Chung Hsing University, Taichung, 40227 Taiwan
| | - Yi-Chien Wu
- Taichung District Agricultural Research and Extension Station, Council of Agriculture, Taichung, Taiwan
| | - Chia-Yu Lin
- Miaoli District Agricultural Research and Extension Station, Council of Agriculture, Miaoli, Taiwan
| | - Ming-Hsin Lai
- Crop Science Division, Taiwan Agricultural Research Institute, Council of Agriculture, Taichung, 413008 Taiwan
| | - Chin-Ying Yang
- Department of Agronomy, National Chung Hsing University, Taichung, 40227 Taiwan
- Smart Sustainable New Agriculture Research Center (SMARTer), National Chung Hsing University, Taichung, 40227 Taiwan
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Singh P, Pani A, Mujumdar AS, Shirkole SS. New strategies on the application of artificial intelligence in the field of phytoremediation. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:505-523. [PMID: 35802802 DOI: 10.1080/15226514.2022.2090500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Artificial Intelligence (AI) is expected to play a crucial role in the field of phytoremediation and its effective management in monitoring the growth of the plant in different contaminated soils and their phenotype characteristic such as the biomass of plants. This review focuses on recent applications of various AI techniques and remote sensing approaches in the field of phytoremediation to monitor plant growth with relevant morphological parameters using novel sensors, cameras, and associated modern technologies. Novel sensing and various measurement techniques are highlighted. Input parameters are used to develop futuristic models utilizing AI and statistical approaches. Additionally, a brief discussion has been presented on the use of AI techniques to detect metal hyperaccumulation in all parts of the plant, carbon capture, and sequestration along with its effect on food production to ensure food safety and security. This article highlights the application, limitation, and future perspectives of phytoremediation in monitoring the mobility, bioavailability, seasonal variation, effect of temperature on plant growth, and plant response to the heavy metals in soil by using the AI technique. Suggestions are made for future research in this area to analyze which would help to enhance plant growth and improve food security in long run.
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Affiliation(s)
- Pratyasha Singh
- Department of Civil Engineering, KIIT University, Bhubaneswar, Odisha, India
| | - Aparupa Pani
- Department of Civil Engineering, KIIT University, Bhubaneswar, Odisha, India
| | - Arun S Mujumdar
- Department of Bioresource Engineering, McGill University, Montreal, Canada
| | - Shivanand S Shirkole
- Department of Food Engineering and Technology, Institute of Chemical Technology Mumbai, Bhubaneshwar, Odisha, India
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Abstract
In recent years, technological advances have led to the increasing use of unmanned aerial vehicles (UAVs) for forestry applications. One emerging field for drone application is forest health monitoring (FHM). Common approaches for FHM involve small-scale resource-extensive fieldwork combined with traditional remote sensing platforms. However, the highly dynamic nature of forests requires timely and repetitive data acquisition, often at very high spatial resolution, where conventional remote sensing techniques reach the limits of feasibility. UAVs have shown that they can meet the demands of flexible operation and high spatial resolution. This is also reflected in a rapidly growing number of publications using drones to study forest health. Only a few reviews exist which do not cover the whole research history of UAV-based FHM. Since a comprehensive review is becoming critical to identify research gaps, trends, and drawbacks, we offer a systematic analysis of 99 papers covering the last ten years of research related to UAV-based monitoring of forests threatened by biotic and abiotic stressors. Advances in drone technology are being rapidly adopted and put into practice, further improving the economical use of UAVs. Despite the many advantages of UAVs, such as their flexibility, relatively low costs, and the possibility to fly below cloud cover, we also identified some shortcomings: (1) multitemporal and long-term monitoring of forests is clearly underrepresented; (2) the rare use of hyperspectral and LiDAR sensors must drastically increase; (3) complementary data from other RS sources are not sufficiently being exploited; (4) a lack of standardized workflows poses a problem to ensure data uniformity; (5) complex machine learning algorithms and workflows obscure interpretability and hinders widespread adoption; (6) the data pipeline from acquisition to final analysis often relies on commercial software at the expense of open-source tools.
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Teaching Innovation in STEM Education Using an Unmanned Aerial Vehicle (UAV). EDUCATION SCIENCES 2022. [DOI: 10.3390/educsci12030224] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The use of unmanned aerial vehicles (UAVs) has increased in the science, technology, engineering, and mathematics (STEM) professions. This means there is a growing need to integrate UAV training into STEM education. This study aimed to develop and evaluate a UAV education module and laboratory exercise for natural resource science students. The study used a series of reusable learning objects (RLOs) to assess students’ prior knowledge of remote sensing and UAVs. Students were taught the steps of UAV data acquisition and processing through lectures and UAV simulation videos. Students applied this knowledge by completing a laboratory exercise that used previously collected UAV data. Student knowledge retention and understanding were evaluated using an online quiz to determine the effectiveness of the education module. The average quiz score was 92%, indicating that the UAV laboratory exercise effectively taught students about UAV data acquisition and processing for natural resource research. Overall, students expressed positive opinions about the UAV education module. Student feedback indicated that the laboratory exercise was engaging, but some students would have preferred a hands-on experience for some parts of the exercise. However, in-person UAV instruction may not be accessible for all educators because of UAV cost or lack of instructor training. This study provides educators with crucial recommendations for designing UAV exercises to improve access to UAV-related educational content. This study indicates that online training can effectively introduce students to UAVs. Given the wide range of UAV uses across STEM fields, students in many STEM disciplines would benefit from UAV education.
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Ji Y, Chen Z, Cheng Q, Liu R, Li M, Yan X, Li G, Wang D, Fu L, Ma Y, Jin X, Zong X, Yang T. Estimation of plant height and yield based on UAV imagery in faba bean (Vicia faba L.). PLANT METHODS 2022; 18:26. [PMID: 35246179 PMCID: PMC8897926 DOI: 10.1186/s13007-022-00861-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Accepted: 02/20/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Faba bean is an important legume crop in the world. Plant height and yield are important traits for crop improvement. The traditional plant height and yield measurement are labor intensive and time consuming. Therefore, it is essential to estimate these two parameters rapidly and efficiently. The purpose of this study was to provide an alternative way to accurately identify and evaluate faba bean germplasm and breeding materials. RESULTS The results showed that 80% of the maximum plant height extracted from two-dimensional red-green-blue (2D-RGB) images had the best fitting degree with the ground measured values, with the coefficient of determination (R2), root-mean-square error (RMSE), and normalized root-mean-square error (NRMSE) were 0.9915, 1.4411 cm and 5.02%, respectively. In terms of yield estimation, support vector machines (SVM) showed the best performance (R2 = 0.7238, RMSE = 823.54 kg ha-1, NRMSE = 18.38%), followed by random forests (RF) and decision trees (DT). CONCLUSION The results of this study indicated that it is feasible to monitor the plant height of faba bean during the whole growth period based on UAV imagery. Furthermore, the machine learning algorithms can estimate the yield of faba bean reasonably with the multiple time points data of plant height.
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Affiliation(s)
- Yishan Ji
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Zhen Chen
- Institute of Farmland Irrigation, Chinese Academy of Agricultural Sciences, Xinxiang, 453002, China
| | - Qian Cheng
- Institute of Farmland Irrigation, Chinese Academy of Agricultural Sciences, Xinxiang, 453002, China
| | - Rong Liu
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Mengwei Li
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Xin Yan
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Guan Li
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Dong Wang
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Li Fu
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China
| | - Yu Ma
- Department of Horticulture, Washington State University, Pullman, WA, 99164, USA
| | - Xiuliang Jin
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China.
| | - Xuxiao Zong
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China.
| | - Tao Yang
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Haidian District, Beijing, 100081, China.
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Fernández-Guisuraga JM, Calvo L, Suárez-Seoane S. Monitoring post-fire neighborhood competition effects on pine saplings under different environmental conditions by means of UAV multispectral data and structure-from-motion photogrammetry. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 305:114373. [PMID: 34954682 DOI: 10.1016/j.jenvman.2021.114373] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 11/18/2021] [Accepted: 12/19/2021] [Indexed: 06/14/2023]
Abstract
In burned landscapes, the recruitment success of the tree dominant species mainly depends on plant competition mechanisms operating at fine spatial scale, that may hinder resource availability during the former years after the disturbance. Data acquisition at very high spatial resolution from unmanned aerial vehicles (UAV) have promoted new opportunities for understanding context-dependent competition processes in post-fire environments. Here, we explored the potentiality of UAV-borne data for assessing inter-specific competition effects of understory woody vegetation on pine saplings, as well as intra-specific interactions of neighboring saplings, across three burned landscapes located along a climatic/productivity gradient in the Iberian Peninsula. Geographic object-based image analysis (GEOBIA), including multiresolution segmentation and support vector machine (SVM) classification, was used to map pine saplings and understory shrubs at species level. Input data were, on the one hand, multispectral (11.31 cm·pixel-1) and Structure-from-Motion (SfM) canopy height model (CHM) data fusion, hereafter MS-CHM, and, on the other, RGB (3.29 cm·pixel-1) and CHM data fusion, hereafter RGB-CHM. A Random Forest (RF) regression algorithm was used to evaluate the effects of neighborhood competition on the relative growth in height of 50 pine saplings randomly sampled across the MS-CHM classified map. Circular plots of 3 m radius were set from the centroid of each target pine sapling to measure percentage cover, mean height of all individuals in the plot and mean height of individuals contacting the target sapling. Competing shrub species were differentiated according to their fire-adaptive traits (i.e. seeders vs resprouters). Object-based image classification applied on MS-CHM yielded higher overall accuracy for the three sites (83.67% ± 3.06%) than RGB-CHM (74.33% ± 3.21%). Intra-specific competitive effects were not detected, whereas increasing cover and height of shrub neighbors had a significant non-linear impact on the growth on pine saplings across the study sites. The strongest competitive effects of seeder shrubs occurred in open areas with low vegetation cover and fuel continuity, following a gap-dependent model. The non-linear relationships evidenced in this study between the structure of neighboring shrubs and the growth of pine seedlings/saplings have profound implications for considering possible competing thresholds in post-fire decision-making processes. These results endorse the use of UAV multispectral and SfM photogrammetry as a valuable post-fire management tool for measuring accurately the effect of competition in heterogeneous burned landscapes.
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Affiliation(s)
| | - Leonor Calvo
- Area of Ecology, Faculty of Biological and Environmental Sciences, University of León, 24071,León, Spain
| | - Susana Suárez-Seoane
- Department of Organisms and Systems Biology (Ecology Unit) and Research Unit of Biodiversity (UO-CSIC-PA), University of Oviedo, Oviedo, Mieres, Spain
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Rice Height Monitoring between Different Estimation Models Using UAV Photogrammetry and Multispectral Technology. REMOTE SENSING 2021. [DOI: 10.3390/rs14010078] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Unmanned aerial vehicle (UAV) photogrammetry was used to monitor crop height in a flooded paddy field. Three multi-rotor UAVs were utilized to conduct flight missions in order to capture RGB (RedGreenBlue) and multispectral images, and these images were analyzed using several different models to provide the best results. Two image sets taken by two UAVs, mounted with RGB cameras of the same resolution and Global Navigation Satellite System (GNSS) receivers of different accuracies, were applied to perform photogrammetry. Two methods were then proposed for creating crop height models (CHMs), one of which was denoted as the M1 method and was based on the Digital Surface Point Cloud (DSPC) and the Digital Terrain Point Cloud (DSPT). The other was denoted as the M2 method and was based on the DSPC and a bathymetric sensor. An image set taken by another UAV mounted with a multispectral camera was used for multispectral-based photogrammetry. A Normal Differential Vegetation Index (NDVI) and a Vegetation Fraction (VF) were then extracted. A new method based on multiple linear regression (MLR) combining the NDVI, the VF, and a Soil Plant Analysis Development (SPAD) value for estimating the measured height (MH) of rice was then proposed and denoted as the M3 method. The results show that the M1 method, the UAV with a GNSS receiver with a higher accuracy, obtained more reliable estimations, while the M2 method, the UAV with a GNSS receiver of moderate accuracy, was actually slightly better. The effect on the performance of CHMs created by the M1 and M2 methods is more negligible in different plots with different treatments; however, remarkably, the more uniform the distribution of vegetation over the water surface, the better the performance. The M3 method, which was created using only a SPAD value and a canopy NDVI value, showed the highest coefficient of determination (R2) for overall MH estimation, 0.838, compared with other combinations.
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Evaluation of RGB and Multispectral Unmanned Aerial Vehicle (UAV) Imagery for High-Throughput Phenotyping and Yield Prediction in Barley Breeding. REMOTE SENSING 2021. [DOI: 10.3390/rs13142670] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
With advances in plant genomics, plant phenotyping has become a new bottleneck in plant breeding and the need for reliable high-throughput plant phenotyping techniques has emerged. In the face of future climatic challenges, it does not seem appropriate to continue to solely select for grain yield and a few agronomically important traits. Therefore, new sensor-based high-throughput phenotyping has been increasingly used in plant breeding research, with the potential to provide non-destructive, objective and continuous plant characterization that reveals the formation of the final grain yield and provides insights into the physiology of the plant during the growth phase. In this context, we present the comparison of two sensor systems, Red-Green-Blue (RGB) and multispectral cameras, attached to unmanned aerial vehicles (UAV), and investigate their suitability for yield prediction using different modelling approaches in a segregating barley introgression population at three environments with weekly data collection during the entire vegetation period. In addition to vegetation indices, morphological traits such as canopy height, vegetation cover and growth dynamics traits were used for yield prediction. Repeatability analyses and genotype association studies of sensor-based traits were compared with reference values from ground-based phenotyping to test the use of conventional and new traits for barley breeding. The relative height estimation of the canopy by UAV achieved high precision (up to r = 0.93) and repeatability (up to R2 = 0.98). In addition, we found a great overlap of detected significant genotypes between the reference heights and sensor-based heights. The yield prediction accuracy of both sensor systems was at the same level and reached a maximum prediction accuracy of r2 = 0.82 with a continuous increase in precision throughout the entire vegetation period. Due to the lower costs and the consumer-friendly handling of image acquisition and processing, the RGB imagery seems to be more suitable for yield prediction in this study.
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Guo W, Carroll ME, Singh A, Swetnam TL, Merchant N, Sarkar S, Singh AK, Ganapathysubramanian B. UAS-Based Plant Phenotyping for Research and Breeding Applications. PLANT PHENOMICS (WASHINGTON, D.C.) 2021; 2021:9840192. [PMID: 34195621 PMCID: PMC8214361 DOI: 10.34133/2021/9840192] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Accepted: 04/29/2021] [Indexed: 05/19/2023]
Abstract
Unmanned aircraft system (UAS) is a particularly powerful tool for plant phenotyping, due to reasonable cost of procurement and deployment, ease and flexibility for control and operation, ability to reconfigure sensor payloads to diversify sensing, and the ability to seamlessly fit into a larger connected phenotyping network. These advantages have expanded the use of UAS-based plant phenotyping approach in research and breeding applications. This paper reviews the state of the art in the deployment, collection, curation, storage, and analysis of data from UAS-based phenotyping platforms. We discuss pressing technical challenges, identify future trends in UAS-based phenotyping that the plant research community should be aware of, and pinpoint key plant science and agronomic questions that can be resolved with the next generation of UAS-based imaging modalities and associated data analysis pipelines. This review provides a broad account of the state of the art in UAS-based phenotyping to reduce the barrier to entry to plant science practitioners interested in deploying this imaging modality for phenotyping in plant breeding and research areas.
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Affiliation(s)
- Wei Guo
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Japan
| | | | - Arti Singh
- Department of Agronomy, Iowa State University, Ames, Iowa, USA
| | | | - Nirav Merchant
- Data Science Institute, University of Arizona, Tucson, USA
| | - Soumik Sarkar
- Department of Mechanical Engineering, Iowa State University, Ames, Iowa, USA
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Abdullah MM, Al-Ali ZM, Abdullah MT, Al-Anzi B. The Use of Very-High-Resolution Aerial Imagery to Estimate the Structure and Distribution of the Rhanterium epapposum Community for Long-Term Monitoring in Desert Ecosystems. PLANTS 2021; 10:plants10050977. [PMID: 34068447 PMCID: PMC8153646 DOI: 10.3390/plants10050977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 05/11/2021] [Accepted: 05/11/2021] [Indexed: 11/16/2022]
Abstract
The rapid assessment and monitoring of native desert plants are essential in restoration and revegetation projects to track the changes in vegetation patterns in terms of vegetation coverage and structure. This work investigated advanced vegetation monitoring methods utilizing UAVs and remote sensing techniques at the Al Abdali protected site in Kuwait. The study examined the effectiveness of using UAV techniques to assess the structure of desert plants. We specifically examined the use of very-high-resolution aerial imagery to estimate the vegetation structure of Rhanterium epapposum (perennial desert shrub), assess the vegetation cover density changes in desert plants after rainfall events, and investigate the relationship between the distribution of perennial shrub structure and vegetation cover density of annual plants. The images were classified using supervised classification techniques (the SVM method) to assess the changes in desert plants after extreme rainfall events. A digital terrain model (DTM) and a digital surface model (DSM) were also generated to estimate the maximum shrub heights. The classified imagery results show that a significant increase in vegetation coverage occurred in the annual plants after rainfall events. The results also show a reasonable correlation between the shrub heights estimated using UAVs and the ground-truth measurements (R2 = 0.66, p < 0.01). The shrub heights were higher in the high-cover-density plots, with coverage >30% and an average height of 77 cm. However, in the medium-cover-density (MD) plots, the coverage was <30%, and the average height was 52 cm. Our study suggests that utilizing UAVs can provide several advantages to critically support future ecological studies and revegetation and restoration programs in desert ecosystems.
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Affiliation(s)
- Meshal M. Abdullah
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX 77843, USA
- Natural Environmental Systems and Technologies (NEST) Research Group, Ecolife Sciences Research and Consultation, Hawally 30002, Kuwait; (Z.M.A.-A.); (M.T.A.)
- Correspondence: (M.M.A.); (B.A.-A.)
| | - Zahraa M. Al-Ali
- Natural Environmental Systems and Technologies (NEST) Research Group, Ecolife Sciences Research and Consultation, Hawally 30002, Kuwait; (Z.M.A.-A.); (M.T.A.)
| | - Mansour T. Abdullah
- Natural Environmental Systems and Technologies (NEST) Research Group, Ecolife Sciences Research and Consultation, Hawally 30002, Kuwait; (Z.M.A.-A.); (M.T.A.)
- Science Department, College of Basic Education, The Public Authority for Applied Education and Training, Kuwait City 12064, Kuwait
| | - Bader Al-Anzi
- Department of Environmental Technologies and Management, College of Life Sciences, Kuwait University, Kuwait City 13060, Kuwait
- Correspondence: (M.M.A.); (B.A.-A.)
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13
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Tang Z, Parajuli A, Chen CJ, Hu Y, Revolinski S, Medina CA, Lin S, Zhang Z, Yu LX. Validation of UAV-based alfalfa biomass predictability using photogrammetry with fully automatic plot segmentation. Sci Rep 2021; 11:3336. [PMID: 33558558 PMCID: PMC7870825 DOI: 10.1038/s41598-021-82797-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Accepted: 01/25/2021] [Indexed: 11/20/2022] Open
Abstract
Alfalfa is the most widely cultivated forage legume, with approximately 30 million hectares planted worldwide. Genetic improvements in alfalfa have been highly successful in developing cultivars with exceptional winter hardiness and disease resistance traits. However, genetic improvements have been limited for complex economically important traits such as biomass. One of the major bottlenecks is the labor-intensive phenotyping burden for biomass selection. In this study, we employed two alfalfa fields to pave a path to overcome the challenge by using UAV images with fully automatic field plot segmentation for high-throughput phenotyping. The first field was used to develop the prediction model and the second field to validate the predictions. The first and second fields had 808 and 1025 plots, respectively. The first field had three harvests with biomass measured in May, July, and September of 2019. The second had one harvest with biomass measured in September of 2019. These two fields were imaged one day before harvesting with a DJI Phantom 4 pro UAV carrying an additional Sentera multispectral camera. Alfalfa plot images were extracted by GRID software to quantify vegetative area based on the Normalized Difference Vegetation Index. The prediction model developed from the first field explained 50-70% (R Square) of biomass variation in the second field by incorporating four features from UAV images: vegetative area, plant height, Normalized Green-Red Difference Index, and Normalized Difference Red Edge Index. This result suggests that UAV-based, high-throughput phenotyping could be used to improve the efficiency of the biomass selection process in alfalfa breeding programs.
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Affiliation(s)
- Zhou Tang
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
| | - Atit Parajuli
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
| | - Chunpeng James Chen
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
| | - Yang Hu
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
| | - Samuel Revolinski
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
| | - Cesar Augusto Medina
- United States Department of Agriculture-Agricultural Research Service, Plant Germplasm Introduction and Testing Research, 24106 N Bunn Road, Prosser, WA, 99350, USA
| | - Sen Lin
- United States Department of Agriculture-Agricultural Research Service, Plant Germplasm Introduction and Testing Research, 24106 N Bunn Road, Prosser, WA, 99350, USA
| | - Zhiwu Zhang
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA.
| | - Long-Xi Yu
- United States Department of Agriculture-Agricultural Research Service, Plant Germplasm Introduction and Testing Research, 24106 N Bunn Road, Prosser, WA, 99350, USA.
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Li D, Quan C, Song Z, Li X, Yu G, Li C, Muhammad A. High-Throughput Plant Phenotyping Platform (HT3P) as a Novel Tool for Estimating Agronomic Traits From the Lab to the Field. Front Bioeng Biotechnol 2021; 8:623705. [PMID: 33520974 PMCID: PMC7838587 DOI: 10.3389/fbioe.2020.623705] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 12/15/2020] [Indexed: 11/13/2022] Open
Abstract
Food scarcity, population growth, and global climate change have propelled crop yield growth driven by high-throughput phenotyping into the era of big data. However, access to large-scale phenotypic data has now become a critical barrier that phenomics urgently must overcome. Fortunately, the high-throughput plant phenotyping platform (HT3P), employing advanced sensors and data collection systems, can take full advantage of non-destructive and high-throughput methods to monitor, quantify, and evaluate specific phenotypes for large-scale agricultural experiments, and it can effectively perform phenotypic tasks that traditional phenotyping could not do. In this way, HT3Ps are novel and powerful tools, for which various commercial, customized, and even self-developed ones have been recently introduced in rising numbers. Here, we review these HT3Ps in nearly 7 years from greenhouses and growth chambers to the field, and from ground-based proximal phenotyping to aerial large-scale remote sensing. Platform configurations, novelties, operating modes, current developments, as well the strengths and weaknesses of diverse types of HT3Ps are thoroughly and clearly described. Then, miscellaneous combinations of HT3Ps for comparative validation and comprehensive analysis are systematically present, for the first time. Finally, we consider current phenotypic challenges and provide fresh perspectives on future development trends of HT3Ps. This review aims to provide ideas, thoughts, and insights for the optimal selection, exploitation, and utilization of HT3Ps, and thereby pave the way to break through current phenotyping bottlenecks in botany.
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Affiliation(s)
- Daoliang Li
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Centre for Internet of Things in Agriculture, China Agricultural University, Beijing, China
- China-EU Center for Information and Communication Technologies in Agriculture, China Agriculture University, Beijing, China
- Key Laboratory of Agriculture Information Acquisition Technology, Ministry of Agriculture, China Agricultural University, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Chaoqun Quan
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Centre for Internet of Things in Agriculture, China Agricultural University, Beijing, China
- China-EU Center for Information and Communication Technologies in Agriculture, China Agriculture University, Beijing, China
- Key Laboratory of Agriculture Information Acquisition Technology, Ministry of Agriculture, China Agricultural University, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Zhaoyang Song
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Centre for Internet of Things in Agriculture, China Agricultural University, Beijing, China
- China-EU Center for Information and Communication Technologies in Agriculture, China Agriculture University, Beijing, China
- Key Laboratory of Agriculture Information Acquisition Technology, Ministry of Agriculture, China Agricultural University, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Xiang Li
- Department of Psychology, College of Education, Hubei University, Wuhan, China
| | - Guanghui Yu
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Centre for Internet of Things in Agriculture, China Agricultural University, Beijing, China
- China-EU Center for Information and Communication Technologies in Agriculture, China Agriculture University, Beijing, China
- Key Laboratory of Agriculture Information Acquisition Technology, Ministry of Agriculture, China Agricultural University, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Cheng Li
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- Beijing Engineering and Technology Research Centre for Internet of Things in Agriculture, China Agricultural University, Beijing, China
- China-EU Center for Information and Communication Technologies in Agriculture, China Agriculture University, Beijing, China
- Key Laboratory of Agriculture Information Acquisition Technology, Ministry of Agriculture, China Agricultural University, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
| | - Akhter Muhammad
- National Innovation Center for Digital Fishery, China Agricultural University, Beijing, China
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
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15
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Singh A, Jones S, Ganapathysubramanian B, Sarkar S, Mueller D, Sandhu K, Nagasubramanian K. Challenges and Opportunities in Machine-Augmented Plant Stress Phenotyping. TRENDS IN PLANT SCIENCE 2021; 26:53-69. [PMID: 32830044 DOI: 10.1016/j.tplants.2020.07.010] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Revised: 07/15/2020] [Accepted: 07/23/2020] [Indexed: 05/06/2023]
Abstract
Plant stress phenotyping is essential to select stress-resistant varieties and develop better stress-management strategies. Standardization of visual assessments and deployment of imaging techniques have improved the accuracy and reliability of stress assessment in comparison with unaided visual measurement. The growing capabilities of machine learning (ML) methods in conjunction with image-based phenotyping can extract new insights from curated, annotated, and high-dimensional datasets across varied crops and stresses. We propose an overarching strategy for utilizing ML techniques that methodically enables the application of plant stress phenotyping at multiple scales across different types of stresses, program goals, and environments.
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Affiliation(s)
- Arti Singh
- Department of Agronomy, Iowa State University, Ames, IA, USA.
| | - Sarah Jones
- Department of Agronomy, Iowa State University, Ames, IA, USA
| | | | - Soumik Sarkar
- Department of Mechanical Engineering, Iowa State University, Ames, IA, USA
| | - Daren Mueller
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA
| | - Kulbir Sandhu
- Department of Agronomy, Iowa State University, Ames, IA, USA
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Han X, Thomasson JA, Swaminathan V, Wang T, Siegfried J, Raman R, Rajan N, Neely H. Field-Based Calibration of Unmanned Aerial Vehicle Thermal Infrared Imagery with Temperature-Controlled References. SENSORS (BASEL, SWITZERLAND) 2020; 20:E7098. [PMID: 33322326 PMCID: PMC7762989 DOI: 10.3390/s20247098] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 12/08/2020] [Accepted: 12/10/2020] [Indexed: 11/17/2022]
Abstract
Accurate and reliable calibration methods are required when applying unmanned aerial vehicle (UAV)-based thermal remote sensing in precision agriculture for crop stress monitoring, irrigation planning, and harvesting. The primary objective of this study was to improve the calibration accuracies of UAV-based thermal images using temperature-controlled ground references. Two temperature-controlled ground references were installed in the field to serve as high- and low-temperature references, approximately spanning the expected range of crop surface temperatures during the growing season. Our results showed that the proposed method using temperature-controlled references was able to reduce errors due to ambient conditions from 9.29 to 1.68 °C, when tested with validation panels. There was a significant improvement in crop temperature estimation from the thermal image mosaic, as the error reduced from 14.0 °C in the un-calibrated image to 1.01 °C in the calibrated image. Furthermore, a multiple linear regression model (R2 = 0.78; p-value < 0.001; relative RMSE = 2.42%) was established to quantify soil moisture content based on canopy surface temperature and soil type, using UAV-based thermal image data and soil electrical conductivity (ECa) data as the predictor variables.
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Affiliation(s)
- Xiongzhe Han
- Department of Biosystems Engineering, College of Agriculture and Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon, Korea
| | - J. Alex Thomasson
- Department of Agricultural and Biological Engineering, Mississippi State University, Starkville, MS 39759, USA;
| | - Vaishali Swaminathan
- Department of Biological and Agricultural Engineering, Texas A&M University, College Station, TX 77843, USA;
| | - Tianyi Wang
- Texas A&M AgriLife Research, Dallas, TX 75252, USA;
| | - Jeffrey Siegfried
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX 77843, USA; (J.S.); (R.R.); (N.R.)
| | - Rahul Raman
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX 77843, USA; (J.S.); (R.R.); (N.R.)
| | - Nithya Rajan
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX 77843, USA; (J.S.); (R.R.); (N.R.)
| | - Haly Neely
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA;
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17
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The potential of remote sensing and artificial intelligence as tools to improve the resilience of agriculture production systems. Curr Opin Biotechnol 2020; 70:15-22. [PMID: 33038780 DOI: 10.1016/j.copbio.2020.09.003] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 09/01/2020] [Accepted: 09/06/2020] [Indexed: 12/20/2022]
Abstract
Modern agriculture and food production systems are facing increasing pressures from climate change, land and water availability, and, more recently, a pandemic. These factors are threatening the environmental and economic sustainability of current and future food supply systems. Scientific and technological innovations are needed more than ever to secure enough food for a fast-growing global population. Scientific advances have led to a better understanding of how various components of the agricultural system interact, from the cell to the field level. Despite incredible advances in genetic tools over the past few decades, our ability to accurately assess crop status in the field, at scale, has been severely lacking until recently. Thanks to recent advances in remote sensing and Artificial Intelligence (AI), we can now quantify field scale phenotypic information accurately and integrate the big data into predictive and prescriptive management tools. This review focuses on the use of recent technological advances in remote sensing and AI to improve the resilience of agricultural systems, and we will present a unique opportunity for the development of prescriptive tools needed to address the next decade's agricultural and human nutrition challenges.
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18
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A Canopy Information Measurement Method for Modern Standardized Apple Orchards Based on UAV Multimodal Information. SENSORS 2020; 20:s20102985. [PMID: 32466120 PMCID: PMC7288116 DOI: 10.3390/s20102985] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/03/2020] [Revised: 05/22/2020] [Accepted: 05/22/2020] [Indexed: 11/25/2022]
Abstract
To make canopy information measurements in modern standardized apple orchards, a method for canopy information measurements based on unmanned aerial vehicle (UAV) multimodal information is proposed. Using a modern standardized apple orchard as the study object, a visual imaging system on a quadrotor UAV was used to collect canopy images in the apple orchard, and three-dimensional (3D) point-cloud models and vegetation index images of the orchard were generated with Pix4Dmapper software. A row and column detection method based on grayscale projection in orchard index images (RCGP) is proposed. Morphological information measurements of fruit tree canopies based on 3D point-cloud models are established, and a yield prediction model for fruit trees based on the UAV multimodal information is derived. The results are as follows: (1) When the ground sampling distance (GSD) was 2.13–6.69 cm/px, the accuracy of row detection in the orchard using the RCGP method was 100.00%. (2) With RCGP, the average accuracy of column detection based on grayscale images of the normalized green (NG) index was 98.71–100.00%. The hand-measured values of H, SXOY, and V of the fruit tree canopy were compared with those obtained with the UAV. The results showed that the coefficient of determination R2 was the most significant, which was 0.94, 0.94, and 0.91, respectively, and the relative average deviation (RADavg) was minimal, which was 1.72%, 4.33%, and 7.90%, respectively, when the GSD was 2.13 cm/px. Yield prediction was modeled by the back-propagation artificial neural network prediction model using the color and textural characteristic values of fruit tree vegetation indices and the morphological characteristic values of point-cloud models. The R2 value between the predicted yield values and the measured values was 0.83–0.88, and the RAD value was 8.05–9.76%. These results show that the UAV-based canopy information measurement method in apple orchards proposed in this study can be applied to the remote evaluation of canopy 3D morphological information and can yield information about modern standardized orchards, thereby improving the level of orchard informatization. This method is thus valuable for the production management of modern standardized orchards.
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19
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Producing Urban Aerobiological Risk Map for Cupressaceae Family in the SW Iberian Peninsula from LiDAR Technology. REMOTE SENSING 2020. [DOI: 10.3390/rs12101562] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Given the rise in the global population and the consequently high levels of pollution, urban green areas, such as those that include plants in the Cupressaceae family, are suitable to reduce the pollution levels, improving the air quality. However, some species with ornamental value are also very allergenic species whose planting should be regulated and their pollen production reduced by suitable pruning. The Aerobiological Index to create Risk maps for Ornamental Trees (AIROT), in its previous version, already included parameters that other indexes did not consider, such as the width of the streets, the height of buildings and the geographical characteristics of cities. It can be considered by working with LiDAR (Light Detection and Ranging) data from five urban areas, which were used to create the DEM and DSM (digital elevation and surface models) needed to create one of the parameters. Pollen production is proposed as a parameter (α) based on characteristics and uses in the forms of hedges or trees that will be incorporated into the index. It will allow the comparison of different species for the evaluation of the pruning effect when aerobiological risks are established. The maps for some species of Cupressaceae (Cupressus arizonica, Cupressus macrocarpa, Cupressus sempervirens, Cupressocyparis leylandii and Platycladus orientalis) generated in a GIS (geographic information system) from the study of several functions of Kriging, have been used in cities to identify aerobiological risks in areas of tourist and gastronomic interest. Thus, allergy patients can make decisions about the places to visit depending on the levels of risk near those areas. The AIROT index provides valuable information for allergy patients, tourists, urban planning councillors and restaurant owners in order to structure the vegetation, as well as planning tourism according to the surrounding environmental risks and reducing the aerobiological risk of certain areas.
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20
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Review: Cost-Effective Unmanned Aerial Vehicle (UAV) Platform for Field Plant Breeding Application. REMOTE SENSING 2020. [DOI: 10.3390/rs12060998] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Utilization of remote sensing is a new wave of modern agriculture that accelerates plant breeding and research, and the performance of farming practices and farm management. High-throughput phenotyping is a key advanced agricultural technology and has been rapidly adopted in plant research. However, technology adoption is not easy due to cost limitations in academia. This article reviews various commercial unmanned aerial vehicle (UAV) platforms as a high-throughput phenotyping technology for plant breeding. It compares known commercial UAV platforms that are cost-effective and manageable in field settings and demonstrates a general workflow for high-throughput phenotyping, including data analysis. The authors expect this article to create opportunities for academics to access new technologies and utilize the information for their research and breeding programs in more workable ways.
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21
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Autonomous Mobile Ground Control Point Improves Accuracy of Agricultural Remote Sensing through Collaboration with UAV. INVENTIONS 2020. [DOI: 10.3390/inventions5010012] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Ground control points (GCPs) are critical for agricultural remote sensing that require georeferencing and calibration of images collected from an unmanned aerial vehicles (UAV) at different times. However, the conventional stationary GCPs are time-consuming and labor-intensive to measure, distribute, and collect their information in a large field setup. An autonomous mobile GCP and a collaboration strategy to communicate with the UAV were developed to improve the efficiency and accuracy of the UAV-based data collection process. Prior to actual field testing, preliminary tests were conducted using the system to show the capability of automatic path tracking by reducing the root mean square error (RMSE) for lateral deviation from 34.3 cm to 15.6 cm based on the proposed look-ahead tracking method. The tests also indicated the feasibility of moving reflectance reference panels successively along all the waypoints without having detrimental effects on pixel values in the mosaicked images, with the percentage errors in digital number values ranging from −1.1% to 0.1%. In the actual field testing, the autonomous mobile GCP was able to successfully cooperate with the UAV in real-time without any interruption, showing superior performances for georeferencing, radiometric calibration, height calibration, and temperature calibration, compared to the conventional calibration method that has stationary GCPs.
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22
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Assessment of DSMs Using Backpack-Mounted Systems and Drone Techniques to Characterise Ancient Underground Cellars in the Duero Basin (Spain). SENSORS 2019; 19:s19245352. [PMID: 31817242 PMCID: PMC6961049 DOI: 10.3390/s19245352] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 11/29/2019] [Accepted: 12/02/2019] [Indexed: 01/18/2023]
Abstract
In this study, a backpack-mounted 3D mobile scanning system and a fixed-wing drone (UAV) have been used to register terrain data on the same space. The study area is part of the ancient underground cellars in the Duero Basin. The aim of this work is to characterise the state of the roofs of these wine cellars by obtaining digital surface models (DSM) using the previously mentioned systems to detect any possible cases of collapse, using four geomatic products obtained with these systems. The results obtained from the process offer sufficient quality to generate valid DSMs in the study area or in a similar area. One limitation of the DSMs generated by backpack MMS is that the outcome depends on the distance of the points to the axis of the track and on the irregularities in the terrain. Specific parameters have been studied, such as the measuring distance from the scanning point in the laser scanner, the angle of incidence with regard to the ground, the surface vegetation, and any irregularities in the terrain. The registration speed and the high definition of the terrain offered by these systems produce a model that can be used to select the correct conservation priorities for this unique space.
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23
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Abstract
Emerging technologies such as Internet of Things (IoT) can provide significant potential in Smart Farming and Precision Agriculture applications, enabling the acquisition of real-time environmental data. IoT devices such as Unmanned Aerial Vehicles (UAVs) can be exploited in a variety of applications related to crops management, by capturing high spatial and temporal resolution images. These technologies are expected to revolutionize agriculture, enabling decision-making in days instead of weeks, promising significant reduction in cost and increase in the yield. Such decisions enable the effective application of farm inputs, supporting the four pillars of precision agriculture, i.e., apply the right practice, at the right place, at the right time and with the right quantity. However, the actual proliferation and exploitation of UAVs in Smart Farming has not been as robust as expected mainly due to the challenges confronted when selecting and deploying the relevant technologies, including the data acquisition and image processing methods. The main problem is that still there is no standardized workflow for the use of UAVs in such applications, as it is a relatively new area. In this article, we review the most recent applications of UAVs for Precision Agriculture. We discuss the most common applications, the types of UAVs exploited and then we focus on the data acquisition methods and technologies, appointing the benefits and drawbacks of each one. We also point out the most popular processing methods of aerial imagery and discuss the outcomes of each method and the potential applications of each one in the farming operations.
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Multifunctional Ground Control Points with a Wireless Network for Communication with a UAV. SENSORS 2019; 19:s19132852. [PMID: 31252556 PMCID: PMC6651049 DOI: 10.3390/s19132852] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Revised: 06/21/2019] [Accepted: 06/25/2019] [Indexed: 11/16/2022]
Abstract
Ground control points (GCPs) are commonly used for georeferencing in remote sensing. Precise position measurement of the GCPs typically requires careful ground surveying, which is time-consuming and labor-intensive and thus excessively costly if it needs to be repeated multiple times in a season. A system of multifunctional GCPs and a wireless network for communication with an unmanned aerial vehicle (UAV) was developed to improve the speed of GCP setup and provide GCP data collection in real-time during the flight. While testing the system, a single-board computer on a fixed-wing UAV used in the study successfully recorded position data from all the GCPs during the flight. The multifunctional GCPs were also tested for use as references for calibration of reflectance and height for field objects like crops. The test of radiometric calibration resulted in an average reflectance error of 2.0% and a strong relationship (R2 = 0.99) between UAV-based estimates and ground reflectance. Furthermore, the average height difference between UAV-based height estimates and ground measurements was within 10 cm.
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25
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Estimating Rice Agronomic Traits Using Drone-Collected Multispectral Imagery. REMOTE SENSING 2019. [DOI: 10.3390/rs11050545] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The knowledge of rice nitrogen (N) requirements and uptake capacity are fundamental for the development of improved N management. This paper presents empirical models for predicting agronomic traits that are relevant to yield and N requirements of rice (Oryza sativa L.) through remotely sensed data. Multiple linear regression models were constructed at key growth stages (at tillering and at booting), using as input reflectance values and vegetation indices obtained from a compact multispectral sensor (green, red, red-edge, and near-infrared channels) onboard an unmanned aerial vehicle (UAV). The models were constructed using field data and images from two consecutive years in a number of experimental rice plots in Greece (Thessaloniki Regional Unit), by applying four different N treatments (C0: 0 N kg∙ha−1, C1: 80 N kg∙ha−1, C2: 160 N kg∙ha−1, and C4: 320 N kg∙ha−1). Models for estimating the current crop status (e.g., N uptake at the time of image acquisition) and predicting the future one (e.g., N uptake of grains at maturity) were developed and evaluated. At the tillering stage, high accuracies (R2 ≥ 0.8) were achieved for N uptake and biomass. At the booting stage, similarly high accuracies were achieved for yield, N concentration, N uptake, biomass, and plant height, using inputs from either two or three images. The results of the present study can be useful for providing N recommendations for the two top-dressing fertilizations in rice cultivation, through a cost-efficient workflow.
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26
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Itakura K, Kamakura I, Hosoi F. Three-Dimensional Monitoring of Plant Structural Parameters and Chlorophyll Distribution. SENSORS (BASEL, SWITZERLAND) 2019; 19:E413. [PMID: 30669537 PMCID: PMC6359203 DOI: 10.3390/s19020413] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 01/16/2019] [Accepted: 01/18/2019] [Indexed: 11/16/2022]
Abstract
Image analysis is widely used for accurate and efficient plant monitoring. Plants have complex three-dimensional (3D) structures; hence, 3D image acquisition and analysis is useful for determining the status of plants. Here, 3D images of plants were reconstructed using a photogrammetric approach, called "structure from motion". Chlorophyll content is an important parameter that determines the status of plants. Chlorophyll content was estimated from 3D images of plants with color information. To observe changes in the chlorophyll content and plant structure, a potted plant was kept for five days under a water stress condition and its 3D images were taken once a day. As a result, the normalized Red value and the chlorophyll content were correlated; a high R² value (0.81) was obtained. The absolute error of the chlorophyll content estimation in cross-validation studies was 4.0 × 10-2 μg/mm². At the same time, the structural parameters (i.e., the leaf inclination angle and the azimuthal angle) were calculated by simultaneously monitoring the changes in the plant's status in terms of its chlorophyll content and structural parameters. By combining these parameters related to plant information in plant image analysis, early detection of plant stressors, such as water stress, becomes possible.
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Affiliation(s)
- Kenta Itakura
- Graduate School, University of Tokyo, Tokyo 113-8657, Japan.
| | | | - Fumiki Hosoi
- Graduate School, University of Tokyo, Tokyo 113-8657, Japan.
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