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Namasudra S, Dhamodharavadhani S, Rathipriya R. Nonlinear Neural Network Based Forecasting Model for Predicting COVID-19 Cases. Neural Process Lett 2023; 55:171-191. [PMID: 33821142 PMCID: PMC8012519 DOI: 10.1007/s11063-021-10495-w] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/12/2021] [Indexed: 02/07/2023]
Abstract
The recent COVID-19 outbreak has severely affected people around the world. There is a need of an efficient decision making tool to improve awareness about the spread of COVID-19 infections among the common public. An accurate and reliable neural network based tool for predicting confirmed, recovered and death cases of COVID-19 can be very helpful to the health consultants for taking appropriate actions to control the outbreak. This paper proposes a novel Nonlinear Autoregressive (NAR) Neural Network Time Series (NAR-NNTS) model for forecasting COVID-19 cases. This NAR-NNTS model is trained with Scaled Conjugate Gradient (SCG), Levenberg Marquardt (LM) and Bayesian Regularization (BR) training algorithms. The performance of the proposed model has been compared by using Root Mean Square Error (RMSE), Mean Square Error (MSE) and correlation co-efficient i.e. R-value. The results show that NAR-NNTS model trained with LM training algorithm performs better than other models for COVID-19 epidemiological data prediction.
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Affiliation(s)
- Suyel Namasudra
- Department of Computer Science and Engineering, National Institute of Technology Patna, Bihar, India
| | | | - R Rathipriya
- Department of Computer Science, Periyar University, Salem, India
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Nanni L, Brahnam S, Paci M, Ghidoni S. Comparison of Different Convolutional Neural Network Activation Functions and Methods for Building Ensembles for Small to Midsize Medical Data Sets. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22166129. [PMID: 36015898 PMCID: PMC9415767 DOI: 10.3390/s22166129] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Revised: 08/09/2022] [Accepted: 08/12/2022] [Indexed: 05/08/2023]
Abstract
CNNs and other deep learners are now state-of-the-art in medical imaging research. However, the small sample size of many medical data sets dampens performance and results in overfitting. In some medical areas, it is simply too labor-intensive and expensive to amass images numbering in the hundreds of thousands. Building Deep CNN ensembles of pre-trained CNNs is one powerful method for overcoming this problem. Ensembles combine the outputs of multiple classifiers to improve performance. This method relies on the introduction of diversity, which can be introduced on many levels in the classification workflow. A recent ensembling method that has shown promise is to vary the activation functions in a set of CNNs or within different layers of a single CNN. This study aims to examine the performance of both methods using a large set of twenty activations functions, six of which are presented here for the first time: 2D Mexican ReLU, TanELU, MeLU + GaLU, Symmetric MeLU, Symmetric GaLU, and Flexible MeLU. The proposed method was tested on fifteen medical data sets representing various classification tasks. The best performing ensemble combined two well-known CNNs (VGG16 and ResNet50) whose standard ReLU activation layers were randomly replaced with another. Results demonstrate the superiority in performance of this approach.
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Affiliation(s)
- Loris Nanni
- Department of Information Engineering, University of Padua, Via Gradenigo 6, 35131 Padova, Italy
| | - Sheryl Brahnam
- Department of Information Technology and Cybersecurity, Missouri State University, 901 S. National Street, Springfield, MO 65804, USA
- Correspondence:
| | - Michelangelo Paci
- BioMediTech, Faculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34, D 219, FI-33520 Tampere, Finland
| | - Stefano Ghidoni
- Department of Information Engineering, University of Padua, Via Gradenigo 6, 35131 Padova, Italy
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Deep Ensembles Based on Stochastic Activations for Semantic Segmentation. SIGNALS 2021. [DOI: 10.3390/signals2040047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Semantic segmentation is a very popular topic in modern computer vision, and it has applications in many fields. Researchers have proposed a variety of architectures for semantic image segmentation. The most common ones exploit an encoder–decoder structure that aims to capture the semantics of the image and its low-level features. The encoder uses convolutional layers, in general with a stride larger than one, to extract the features, while the decoder recreates the image by upsampling and using skip connections with the first layers. The objective of this study is to propose a method for creating an ensemble of CNNs by enhancing diversity among networks with different activation functions. In this work, we use DeepLabV3+ as an architecture to test the effectiveness of creating an ensemble of networks by randomly changing the activation functions inside the network multiple times. We also use different backbone networks in our DeepLabV3+ to validate our findings. A comprehensive evaluation of the proposed approach is conducted across two different image segmentation problems: the first is from the medical field, i.e., polyp segmentation for early detection of colorectal cancer, and the second is skin detection for several different applications, including face detection, hand gesture recognition, and many others. As to the first problem, we manage to reach a Dice coefficient of 0.888, and a mean intersection over union (mIoU) of 0.825, in the competitive Kvasir-SEG dataset. The high performance of the proposed ensemble is confirmed in skin detection, where the proposed approach is ranked first concerning other state-of-the-art approaches (including HarDNet) in a large set of testing datasets.
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Baldissera D, Nanni L, Brahnam S, Lumini A. Postprocessing for Skin Detection. J Imaging 2021; 7:95. [PMID: 39080883 PMCID: PMC8321377 DOI: 10.3390/jimaging7060095] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 05/24/2021] [Accepted: 05/28/2021] [Indexed: 12/01/2022] Open
Abstract
Skin detectors play a crucial role in many applications: face localization, person tracking, objectionable content screening, etc. Skin detection is a complicated process that involves not only the development of apposite classifiers but also many ancillary methods, including techniques for data preprocessing and postprocessing. In this paper, a new postprocessing method is described that learns to select whether an image needs the application of various morphological sequences or a homogeneity function. The type of postprocessing method selected is learned based on categorizing the image into one of eleven predetermined classes. The novel postprocessing method presented here is evaluated on ten datasets recommended for fair comparisons that represent many skin detection applications. The results show that the new approach enhances the performance of the base classifiers and previous works based only on learning the most appropriate morphological sequences.
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Affiliation(s)
- Diego Baldissera
- Department of Information Engineering (DEI), University of Padova, 35131 Padova, Italy;
| | - Loris Nanni
- Department of Information Engineering (DEI), University of Padova, 35131 Padova, Italy;
| | - Sheryl Brahnam
- Department of Information Technology and Cybersecurity, Missouri State University, Springfield, MO 65804, USA;
| | - Alessandra Lumini
- Department of Computer Science and Engineering (DISI), University of Bologna, 47521 Cesena, Italy;
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Sonoda S, Shiihara H, Terasaki H, Kakiuchi N, Funatsu R, Tomita M, Shinohara Y, Uchino E, Udagawa T, An G, Akiba M, Yokota H, Sakamoto T. Artificial intelligence for classifying uncertain images by humans in determining choroidal vascular running pattern and comparisons with automated classification between artificial intelligence. PLoS One 2021; 16:e0251553. [PMID: 33989334 PMCID: PMC8121314 DOI: 10.1371/journal.pone.0251553] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 04/28/2021] [Indexed: 11/26/2022] Open
Abstract
Purpose Abnormalities of the running pattern of choroidal vessel have been reported in eyes with pachychoroid diseases. However, it is difficult for clinicians to judge the running pattern with high reproducibility. Thus, the purpose of this study was to compare the degree of concordance of the running pattern of the choroidal vessels between that determined by artificial intelligence (AI) to that determined by experienced clinicians. Methods The running pattern of the choroidal vessels in en face images of Haller’s layer of 413 normal and pachychoroid diseased eyes was classified as symmetrical or asymmetrical by human raters and by three supervised machine learning models; the support vector machine (SVM), Xception, and random forest models. The data from the human raters were used as the supervised data. The accuracy rates of the human raters and the certainty of AI’s answers were compared using confidence scores (CSs). Results The choroidal vascular running pattern could be determined by each AI model with an area under the curve better than 0.94. The random forest method was able to discriminate with the highest accuracy among the three AIs. In the CS analyses, the percentage of certainty was highest (66.4%) and that of uncertainty was lowest (6.1%) in the agreement group. On the other hand, the rate of uncertainty was highest (27.3%) in the disagreement group. Conclusion AI algorithm can automatically classify with ambiguous criteria the presence or absence of a symmetrical blood vessel running pattern of the choroid. The classification was as good as that of supervised humans in accuracy and reproducibility.
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Affiliation(s)
- Shozo Sonoda
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
- Sonoda Eye Clinic, Kagoshima, Japan
| | - Hideki Shiihara
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
| | - Hiroto Terasaki
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
| | - Naoko Kakiuchi
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
| | - Ryoh Funatsu
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
| | - Masatoshi Tomita
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
| | - Yuki Shinohara
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
| | | | - Takuma Udagawa
- R&D Division, Topcon Corporation, Tokyo, Japan
- Image Processing Research Team, RIKEN Center for Advanced Photonics, RIKEN, Wako, Japan
| | - Guangzhou An
- R&D Division, Topcon Corporation, Tokyo, Japan
- Image Processing Research Team, RIKEN Center for Advanced Photonics, RIKEN, Wako, Japan
| | - Masahiro Akiba
- R&D Division, Topcon Corporation, Tokyo, Japan
- Image Processing Research Team, RIKEN Center for Advanced Photonics, RIKEN, Wako, Japan
| | - Hideo Yokota
- Image Processing Research Team, RIKEN Center for Advanced Photonics, RIKEN, Wako, Japan
| | - Taiji Sakamoto
- Department of Ophthalmology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
- * E-mail:
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Artificial intelligence applications in medical imaging: A review of the medical physics research in Italy. Phys Med 2021; 83:221-241. [DOI: 10.1016/j.ejmp.2021.04.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 03/31/2021] [Accepted: 04/03/2021] [Indexed: 02/06/2023] Open
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Combined Color Semantics and Deep Learning for the Automatic Detection of Dolphin Dorsal Fins. ELECTRONICS 2020. [DOI: 10.3390/electronics9050758] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Photo-identification is a widely used non-invasive technique in biological studies for understanding if a specimen has been seen multiple times only relying on specific unique visual characteristics. This information is essential to infer knowledge about the spatial distribution, site fidelity, abundance or habitat use of a species. Today there is a large demand for algorithms that can help domain experts in the analysis of large image datasets. For this reason, it is straightforward that the problem of identify and crop the relevant portion of an image is not negligible in any photo-identification pipeline. This paper approaches the problem of automatically cropping cetaceans images with a hybrid technique based on domain analysis and deep learning. Domain knowledge is applied for proposing relevant regions with the aim of highlighting the dorsal fins, then a binary classification of fin vs. no-fin is performed by a convolutional neural network. Results obtained on real images demonstrate the feasibility of the proposed approach in the automated process of large datasets of Risso’s dolphins photos, enabling its use on more complex large scale studies. Moreover, the results of this study suggest to extend this methodology to biological investigations of different species.
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