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Voitiuk K, Seiler ST, Pessoa de Melo M, Geng J, van der Molen T, Hernandez S, Schweiger HE, Sevetson JL, Parks DF, Robbins A, Torres-Montoya S, Ehrlich D, Elliott MAT, Sharf T, Haussler D, Mostajo-Radji MA, Salama SR, Teodorescu M. A feedback-driven brain organoid platform enables automated maintenance and high-resolution neural activity monitoring. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.15.585237. [PMID: 38559212 PMCID: PMC10979982 DOI: 10.1101/2024.03.15.585237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
The analysis of tissue cultures, particularly brain organoids, requires a sophisticated integration and coordination of multiple technologies for monitoring and measuring. We have developed an automated research platform enabling independent devices to achieve collaborative objectives for feedback-driven cell culture studies. Our approach enables continuous, communicative, non-invasive interactions within an Internet of Things (IoT) architecture among various sensing and actuation devices, achieving precisely timed control of in vitro biological experiments. The framework integrates microfluidics, electrophysiology, and imaging devices to maintain cerebral cortex organoids while measuring their neuronal activity. The organoids are cultured in custom, 3D-printed chambers affixed to commercial microelectrode arrays. Periodic feeding is achieved using programmable microfluidic pumps. We developed a computer vision fluid volume estimator used as feedback to rectify deviations in microfluidic perfusion during media feeding/aspiration cycles. We validated the system with a set of 7-day studies of mouse cerebral cortex organoids, comparing manual and automated protocols. The automated protocols were validated in maintaining robust neural activity throughout the experiment. The automated system enabled hourly electrophysiology recordings for the 7-day studies. Median neural unit firing rates increased for every sample and dynamic patterns of organoid firing rates were revealed by high-frequency recordings. Surprisingly, feeding did not affect firing rate. Furthermore, performing media exchange during a recording showed no acute effects on firing rate, enabling the use of this automated platform for reagent screening studies.
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Affiliation(s)
- Kateryna Voitiuk
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
| | - Spencer T. Seiler
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
| | - Mirella Pessoa de Melo
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Electrical and Computer Engineering, University of
California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Jinghui Geng
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Electrical and Computer Engineering, University of
California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Tjitse van der Molen
- Neuroscience Research Institute, University of California Santa
Barbara, Santa Barbara, CA 93106, USA
- Department of Molecular, Cellular and Developmental Biology,
University of California Santa Barbara, Santa Barbara, CA 93106, USA
| | - Sebastian Hernandez
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Electrical and Computer Engineering, University of
California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Hunter E. Schweiger
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Molecular, Cell, and Developmental Biology,
University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Jess L. Sevetson
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Molecular, Cell, and Developmental Biology,
University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - David F. Parks
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
| | - Ash Robbins
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Electrical and Computer Engineering, University of
California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Sebastian Torres-Montoya
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Electrical and Computer Engineering, University of
California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Drew Ehrlich
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Computational Media, University of California Santa
Cruz, Santa Cruz, CA 95064, USA
| | - Matthew A. T. Elliott
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
| | - Tal Sharf
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
| | - David Haussler
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
| | - Mohammed A. Mostajo-Radji
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Molecular, Cell, and Developmental Biology,
University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Sofie R. Salama
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Biomolecular Engineering, University of California
Santa Cruz, Santa Cruz, CA 95064, USA
- Department of Molecular, Cell, and Developmental Biology,
University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Mircea Teodorescu
- Genomics Institute, University of California Santa Cruz, Santa
Cruz, CA 95064, USA
- Department of Electrical and Computer Engineering, University of
California Santa Cruz, Santa Cruz, CA 95064, USA
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Plastras S, Tsoumatidis D, Skoutas DN, Rouskas A, Kormentzas G, Skianis C. Non-Terrestrial Networks for Energy-Efficient Connectivity of Remote IoT Devices in the 6G Era: A Survey. SENSORS (BASEL, SWITZERLAND) 2024; 24:1227. [PMID: 38400391 PMCID: PMC10891744 DOI: 10.3390/s24041227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 02/06/2024] [Accepted: 02/12/2024] [Indexed: 02/25/2024]
Abstract
The Internet of Things (IoT) is gaining popularity and market share, driven by its ability to connect devices and systems that were previously siloed, enabling new applications and services in a cost-efficient manner. Thus, the IoT fuels societal transformation and enables groundbreaking innovations like autonomous transport, robotic assistance, and remote healthcare solutions. However, when considering the Internet of Remote Things (IoRT), which refers to the expansion of IoT in remote and geographically isolated areas where neither terrestrial nor cellular networks are available, internet connectivity becomes a challenging issue. Non-Terrestrial Networks (NTNs) are increasingly gaining popularity as a solution to provide connectivity in remote areas due to the growing integration of satellites and Unmanned Aerial Vehicles (UAVs) with cellular networks. In this survey, we provide the technological framework for NTNs and Remote IoT, followed by a classification of the most recent scientific research on NTN-based IoRT systems. Therefore, we provide a comprehensive overview of the current state of research in IoRT and identify emerging research areas with high potential. In conclusion, we present and discuss 3GPP's roadmap for NTN standardization, which aims to establish an energy-efficient IoRT environment in the 6G era.
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Affiliation(s)
- Stefanos Plastras
- Department of Information and Communication Systems Engineering, University of the Aegean, 83200 Samos, Greece; (D.T.); (D.N.S.); (G.K.); (C.S.)
| | - Dimitrios Tsoumatidis
- Department of Information and Communication Systems Engineering, University of the Aegean, 83200 Samos, Greece; (D.T.); (D.N.S.); (G.K.); (C.S.)
| | - Dimitrios N. Skoutas
- Department of Information and Communication Systems Engineering, University of the Aegean, 83200 Samos, Greece; (D.T.); (D.N.S.); (G.K.); (C.S.)
| | - Angelos Rouskas
- Department of Digital Systems, University of Piraeus, 18532 Piraeus, Greece;
| | - Georgios Kormentzas
- Department of Information and Communication Systems Engineering, University of the Aegean, 83200 Samos, Greece; (D.T.); (D.N.S.); (G.K.); (C.S.)
| | - Charalabos Skianis
- Department of Information and Communication Systems Engineering, University of the Aegean, 83200 Samos, Greece; (D.T.); (D.N.S.); (G.K.); (C.S.)
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Hashimoto A, Suehara KI, Kameoka T. Development of a Simultaneous Quantification Method for Multiple Modes of Nitrogen in Leaf Models Using Near-Infrared Spectroscopic Measurement. SENSORS (BASEL, SWITZERLAND) 2024; 24:1160. [PMID: 38400318 PMCID: PMC10892461 DOI: 10.3390/s24041160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 02/03/2024] [Accepted: 02/06/2024] [Indexed: 02/25/2024]
Abstract
By focusing our attention on nitrogen components in plants, which are important for cultivation management in data-driven agriculture, we developed a simple, rapid, non-chemical and simultaneous quantification method for proteinic and nitrate nitrogen in a leaf model based on near-infrared (NIR) spectroscopic information obtained using a compact Fourier Transform NIR (FT-NIR) spectrometer. The NIR spectra of wet leaf models impregnated with a protein-nitric acid mixed solution and a dry leaf model obtained by drying filter paper were acquired. For spectral acquisition, a compact MEMS (Micro Electro Mechanical Systems) FT-NIR spectrometer equipped with a diffuse reflectance probe accessory was used. Partial least square regression analysis was performed using the spectral information of the extracted absorption bands based on the determination coefficients between the spectral absorption intensities and the contents of the two-dimensional spectral analysis between NIR and mid-infrared spectral information. Proteinic nitrogen content in the dry leaf model was well predicted using the MEMS FT-NIR spectroscopic method. Additionally, nitrate nitrogen in the dry leaf model was also determined by the provided method, but the necessity of adding the data for a wider range of nitric acid concentrations was experimentally indicated for the prediction of nitrate nitrogen content in the wet leaf model. Consequently, these results experimentally suggest the possibility of the application of the compact MEMS FT-NIR for obtaining the bioinformation of crops at agricultural on-sites.
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Affiliation(s)
- Atsushi Hashimoto
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya-cho, Tsu 514-8507, Japan;
| | - Ken-ichiro Suehara
- Graduate School of Regional Innovation Studies, Mie University, 1577 Kurimamachiya-cho, Tsu 514-8507, Japan;
| | - Takaharu Kameoka
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya-cho, Tsu 514-8507, Japan;
- Research Center for Social Systems, Shinshu University, 5304-6 Nagakura, Karuizawa 389-0111, Japan
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