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Li X, Liu C, Li W, Qi G, Dai Y, Gu C, Sun Y, Zhou W, Ciliberto VC, Liang J, Kumar S U, Guan D, Hu Z, Zheng H, Liu Z, Chen H, Wan Y, Sun Z. Multi-omics delineate growth factor network underlying exercise effects in an Alzheimer's mouse model. Alzheimers Dement 2025; 21:e70024. [PMID: 40156268 PMCID: PMC11953571 DOI: 10.1002/alz.70024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 01/27/2025] [Accepted: 01/29/2025] [Indexed: 04/01/2025]
Abstract
INTRODUCTION Physical exercise is a primary defense against age-related cognitive decline and Alzheimer's disease (AD). METHODS We conducted single-nucleus transcriptomic and chromatin accessibility analyses (snRNA-seq and snATAC-seq) on the hippocampus of mice carrying mutations in the amyloid precursor protein gene (APPNL-G-F) following prolonged voluntary wheel-running exercise. RESULTS Exercise mitigates amyloid-induced changes in transcriptome and chromatin accessibility through cell type-specific regulatory networks converging on growth factor signaling, particularly the epidermal growth factor receptor (EGFR) signaling. The beneficial effects of exercise on neurocognition can be blocked by pharmacological inhibition of EGFR and its downstream PI3K signaling. Exercise leads to elevated levels of heparin-binding EGF (HB-EGF), and intranasal administration of HB-EGF enhances memory function in sedentary APPNL-G-F mice. DISCUSSION These findings offer a panoramic delineation of cell type-specific hippocampal transcriptional networks activated by exercise and suggest EGFR signaling as a druggable contributor to exercise-induced memory enhancement to combat AD-related cognitive decline. HIGHLIGHTS snRNA-seq and snATAC-seq analysis of APPNL-G-F mice after prolonged wheel-running. Exercise counteracts amyloid-induced transcriptomic and accessibility changes. Networks converge on the activation of EGFR and insulin signaling. Pharmacological inhibition of EGFR and PI3K blocked cognitive benefits of exercise. Intranasal HB-EGF administration enhances memory in sedentary APPNL-G-F mice.
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Affiliation(s)
- Xin Li
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Chaozhong Liu
- Department of PediatricsJan and Dan Duncan Neurological Research Institute, Baylor College of MedicineHoustonTexasUSA
- Jan and Dan Duncan Neurologic Research InstituteTexas Children's HospitalHoustonTexasUSA
- Graduate School of Biomedical Sciences, Program in Quantitative & Computational BiosciencesBaylor College of MedicineHoustonTexasUSA
| | - Wenbo Li
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Guantong Qi
- Jan and Dan Duncan Neurologic Research InstituteTexas Children's HospitalHoustonTexasUSA
- Graduate School of Biomedical Sciences, Program in GeneticsBaylor College of MedicineHoustonTexasUSA
| | - Yanwan Dai
- Department of PediatricsJan and Dan Duncan Neurological Research Institute, Baylor College of MedicineHoustonTexasUSA
| | - Chaohao Gu
- Department of PediatricsJan and Dan Duncan Neurological Research Institute, Baylor College of MedicineHoustonTexasUSA
- Jan and Dan Duncan Neurologic Research InstituteTexas Children's HospitalHoustonTexasUSA
- Graduate School of Biomedical Sciences, Program in Quantitative & Computational BiosciencesBaylor College of MedicineHoustonTexasUSA
| | - Yuxiang Sun
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Wenjun Zhou
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Veronica C. Ciliberto
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Jing Liang
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
- Department of Biochemistry and Molecular BiologySchool of Basic Medical Sciences, Peking University Health Science CenterBeijingChina
| | - Udhaya Kumar S
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Dongyin Guan
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
| | - Zhaoyong Hu
- Department of Medicine – NephrologyBaylor College of MedicineHoustonTexasUSA
| | - Hui Zheng
- Huffington Center on AgingBaylor College of MedicineHoustonTexasUSA
| | - Zhandong Liu
- Department of PediatricsJan and Dan Duncan Neurological Research Institute, Baylor College of MedicineHoustonTexasUSA
- Jan and Dan Duncan Neurologic Research InstituteTexas Children's HospitalHoustonTexasUSA
| | - Hu Chen
- Department of PediatricsJan and Dan Duncan Neurological Research Institute, Baylor College of MedicineHoustonTexasUSA
- Jan and Dan Duncan Neurologic Research InstituteTexas Children's HospitalHoustonTexasUSA
| | - Ying‐Wooi Wan
- Department of PediatricsJan and Dan Duncan Neurological Research Institute, Baylor College of MedicineHoustonTexasUSA
- Jan and Dan Duncan Neurologic Research InstituteTexas Children's HospitalHoustonTexasUSA
| | - Zheng Sun
- Department of MedicineEndocrinology, Diabetes, and MetabolismBaylor College of MedicineHoustonTexasUSA
- Huffington Center on AgingBaylor College of MedicineHoustonTexasUSA
- Department of Molecular and Cellular BiologyBaylor College of MedicineHoustonTexasUSA
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Li X, Liu C, Li W, Dai Y, Gu C, Zhou W, Ciliberto VC, Liang J, Udhaya KS, Guan D, Hu Z, Zheng H, Chen H, Liu Z, Wan YW, Sun Z. Multi-omics delineate growth factor network underlying exercise effects in an Alzheimer's mouse model. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.02.592289. [PMID: 38746443 PMCID: PMC11092636 DOI: 10.1101/2024.05.02.592289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Physical exercise represents a primary defense against age-related cognitive decline and neurodegenerative disorders like Alzheimer's disease (AD). To impartially investigate the underlying mechanisms, we conducted single-nucleus transcriptomic and chromatin accessibility analyses (snRNA-seq and ATAC-seq) on the hippocampus of mice carrying AD-linked NL-G-F mutations in the amyloid precursor protein gene (APPNL-G-F) following prolonged voluntary wheel-running exercise. Our study reveals that exercise mitigates amyloid-induced changes in both transcriptomic expression and chromatin accessibility through cell type-specific transcriptional regulatory networks. These networks converge on the activation of growth factor signaling pathways, particularly the epidermal growth factor receptor (EGFR) and insulin signaling, correlating with an increased proportion of immature dentate granule cells and oligodendrocytes. Notably, the beneficial effects of exercise on neurocognitive functions can be blocked by pharmacological inhibition of EGFR and the downstream phosphoinositide 3-kinases (PI3K). Furthermore, exercise leads to elevated levels of heparin-binding EGF (HB-EGF) in the blood, and intranasal administration of HB-EGF enhances memory function in sedentary APPNL-G-F mice. These findings offer a panoramic delineation of cell type-specific hippocampal transcriptional networks activated by exercise and suggest EGF-related growth factor signaling as a druggable contributor to exercise-induced memory enhancement, thereby suggesting therapeutic avenues for combatting AD-related cognitive decline.
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Affiliation(s)
- Xin Li
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Chaozhong Liu
- Department of Pediatrics, Jan and Dan Duncan Neurological Research Institute, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Wenbo Li
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Yanwan Dai
- Department of Pediatrics, Jan and Dan Duncan Neurological Research Institute, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Chaohao Gu
- Department of Pediatrics, Jan and Dan Duncan Neurological Research Institute, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Wenjun Zhou
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Veronica C. Ciliberto
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Jing Liang
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
- Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China
| | - Kumar. S Udhaya
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Dongyin Guan
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Zhaoyong Hu
- Department of Medicine – Nephrology, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Hui Zheng
- Huffington Center on Aging, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Hu Chen
- Department of Pediatrics, Jan and Dan Duncan Neurological Research Institute, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Zhandong Liu
- Department of Pediatrics, Jan and Dan Duncan Neurological Research Institute, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Ying-Wooi Wan
- Department of Pediatrics, Jan and Dan Duncan Neurological Research Institute, Baylor College of Medicine, Houston, Texas 77030, USA
| | - Zheng Sun
- Department of Medicine – Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, Texas 77030, USA
- Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas77030, USA
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Ou W, Ohno Y, Yang J, Chandrashekar DV, Abdullah T, Sun J, Murphy R, Roules C, Jagadeesan N, Cribbs DH, Sumbria RK. Efficacy and Safety of a Brain-Penetrant Biologic TNF-α Inhibitor in Aged APP/PS1 Mice. Pharmaceutics 2022; 14:2200. [PMID: 36297637 PMCID: PMC9612380 DOI: 10.3390/pharmaceutics14102200] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/04/2022] [Accepted: 10/10/2022] [Indexed: 11/17/2022] Open
Abstract
Tumor necrosis factor alpha (TNF-α) plays a vital role in Alzheimer's disease (AD) pathology, and TNF-α inhibitors (TNFIs) modulate AD pathology. We fused the TNF-α receptor (TNFR), a biologic TNFI that sequesters TNF-α, to a transferrin receptor antibody (TfRMAb) to deliver the TNFI into the brain across the blood-brain barrier (BBB). TfRMAb-TNFR was protective in 6-month-old transgenic APP/PS1 mice in our previous work. However, the effects and safety following delayed chronic TfRMAb-TNFR treatment are unknown. Herein, we initiated the treatment when the male APP/PS1 mice were 10.7 months old (delayed treatment). Mice were injected intraperitoneally with saline, TfRMAb-TNFR, etanercept (non-BBB-penetrating TNFI), or TfRMAb for ten weeks. Biologic TNFIs did not alter hematology indices or tissue iron homeostasis; however, TfRMAb altered hematology indices, increased splenic iron transporter expression, and increased spleen and liver iron. TfRMAb-TNFR and etanercept reduced brain insoluble-amyloid beta (Aβ) 1-42, soluble-oligomeric Aβ, and microgliosis; however, only TfRMAb-TNFR reduced Aβ peptides, Thioflavin-S-positive Aβ plaques, and insoluble-oligomeric Aβ and increased plaque-associated phagocytic microglia. Accordingly, TfRMAb-TNFR improved spatial reference memory and increased BBB-tight junction protein expression, whereas etanercept did not. Overall, despite delayed treatment, TfRMAb-TNFR resulted in a better therapeutic response than etanercept without any TfRMAb-related hematology- or iron-dysregulation in aged APP/PS1 mice.
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Affiliation(s)
- Weijun Ou
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
| | - Yuu Ohno
- Henry E. Riggs School of Applied Life Sciences, Keck Graduate Institute, 535 Watson Dr, Claremont, CA 91711, USA
| | - Joshua Yang
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
- Henry E. Riggs School of Applied Life Sciences, Keck Graduate Institute, 535 Watson Dr, Claremont, CA 91711, USA
| | - Devaraj V. Chandrashekar
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
| | - Tamara Abdullah
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
| | - Jiahong Sun
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
| | - Riley Murphy
- Crean College of Health and Behavioral Sciences, Chapman University, Irvine, CA 92618, USA
| | - Chuli Roules
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
| | - Nataraj Jagadeesan
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
| | - David H. Cribbs
- MIND Institute, University of California, Irvine, CA 92697, USA
| | - Rachita K. Sumbria
- Department of Biomedical and Pharmaceutical Sciences, School of Pharmacy, Chapman University, Irvine, CA 92618, USA
- Department of Neurology, University of California, Irvine, CA 92868, USA
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