A foundation monograph of Ipomoea (Convolvulaceae) in the New World

Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato

The hexaploid sweetpotato (Ipomoea batatas) is one of the most important root crops worldwide. However, its genetic origin remains controversial, and its domestication history remains unknown. In this study, we used a range of genetic evidence and a newly developed haplotype-based phylogenetic analysis to identify two probable progenitors of sweetpotato. The diploid progenitor was likely closely related to Ipomoea aequatoriensis and contributed the B1 subgenome, IbT-DNA2, and the lineage 1 type of chloroplast genome to sweetpotato. The tetraploid progenitor of sweetpotato was most likely I. batatas 4x, which donated the B2 subgenome, IbT-DNA1, and the lineage 2 type of chloroplast genome. Sweetpotato most likely originated from reciprocal crosses between the diploid and tetraploid progenitors, followed by a subsequent whole-genome duplication. In addition, we detected biased gene exchanges between the subgenomes; the rate of B1 to B2 subgenome conversions was nearly three times higher than that of B2 to B1 subgenome conversions. Our analyses revealed that genes involved in storage root formation, maintenance of genome stability, biotic resistance, sugar transport, and potassium uptake were selected during the speciation and domestication of sweetpotato. This study sheds light on the evolution of sweetpotato and paves the way for improvement of this crop.

Chemical variability of volatile concentrate from two Ipomoea L. species within a seasonal gradient

In the present study, are extracted volatile concentrate from Ipomoea asarifolia Poir. and Ipomoea setifera (Desr.) Roem. & Schult. in five-month seasonal gradient. The flowers were subjected to simultaneous distillation - extraction (SDE). The chemical composition of the volatile concentrate was determined by gas chromatography (CG/MS) and (CG-FID). Principal Component Analysis (PCA) and Hierarchical Clustering Analysis (HCA) were performed with the chemical constituents. It was observed that the chemical composition of I. asarifolia varied more with seasonality in relation to the species I. setifera. Furthermore, there is a possibility that germacrene D and α-copaene, the main components of the variation volatile of I. asarifolia and with higher concentrations in the rainy months, have ecological importance, attracting specific pollinators for the rainy season. This is the first study to report the chemical composition of the volatile compounds of I. asarifolia and I. setifera along a seasonal gradient.

Vascular Plant Species Inventory of Mexico's Revillagigedo National Park: Awareness of Alien Invaders as a Sine Qua Non Prerequisite for Island Conservation

The Revillagigedo Archipelago, located in the Eastern Pacific Ocean, stands out for its unique biological richness and endemism. These islands remained uninhabited until the second half of the twentieth century, allowing a better conservation status than on other oceanic islands. However, the continuous introduction of potentially invasive alien plant species, and the lack of adequate control or eradication actions, jeopardize the conservation and restoration of these islands' fragile ecosystems. We present the most complete vascular plant species inventory and an updated list of alien plant species of the Revillagigedo Archipelago, which was compiled through an extensive review of national and international plant collections and other sources. Our 272 species list includes 106 alien plant species (39.3%; 104 in Socorro, and 16 in Clarion): 67 (24.8%) are naturalized, 14 (5.2%) are casual aliens, and 25 (9.3%) subsist under cultivation. The documented alien species belong to 73 families. Annual and perennial herbs are the prevailing life forms in the alien flora, while naturalized species are primarily native to North America. The number of introduced species has increased significantly since the islands became inhabited. Many of the recently introduced species pose a major invasion risk like on other islands of the world.

A new species of Argyreia (Convolvulaceae) from Yunnan, China

Argyreiasubrotunda, a new species from Yunnan Province, China, is described and illustrated. The new species resembles A.fulvocymosa and A.wallichii, but differs from these in the flowers with an entire or shallowly lobed corolla, as well as smaller elliptic bracts, lax flat-topped cymes and shorter corolla tubes. An updated key to the species of Argyreia from Yunnan province is also provided.

Phylogenetic patterns of bioactive secondary metabolites produced by fungal endosymbionts in morning glories (Ipomoeeae, Convolvulaceae)

Heritable fungal endosymbiosis is underinvestigated in plant biology and documented in only three plant families (Convolvulaceae, Fabaceae, and Poaceae). An estimated 40% of morning glory species in the tribe Ipomoeeae (Convolvulaceae) have associations with one of two distinct heritable, endosymbiotic fungi (Periglandula and Chaetothyriales) that produce the bioactive metabolites ergot alkaloids, indole diterpene alkaloids, and swainsonine, which have been of interest for their toxic effects on animals and potential medical applications. Here, we report the occurrence of ergot alkaloids, indole diterpene alkaloids, and swainsonine in the Convolvulaceae; and the fungi that produce them based on synthesis of previous studies and new indole diterpene alkaloid data from 27 additional species in a phylogenetic, geographic, and life-history context. We find that individual morning glory species host no more than one metabolite-producing fungal endosymbiont (with one possible exception), possibly due to costs to the host and overlapping functions of the alkaloids. The symbiotic morning glory lineages occur in distinct phylogenetic clades, and host species have significantly larger seed size than nonsymbiotic species. The distinct and widely distributed endosymbiotic relationships in the morning glory family and their alkaloids provide an accessible study system for understanding heritable plant-fungal symbiosis evolution and their potential functions for host plants.

The genome size, chromosome number and the seed adaption to long-distance dispersal of Ipomoea pes-caprae (L.)

Ipomoeapes-caprae (L.) (IPC) is a common species in tropical and subtropical coastal areas and one of the world's most widely distributed plants. It has attracted researchers for its outstanding biological, ecological and medicinal values. It has been reported that the genetic diversity of IPCs located on different continents is very low because of their frequent gene flow. During the long journey of evolution, every aspect of the plant morphologies has evolved to the best adaptivity to the environment, seeking their survival and progeny expansion. However, the fundamental genetic characteristics of IPC and how their seed adapted to the success of population expansion remain unknown. In this study, the fundamental genetic characteristics, including the genome size and the chromosome number of IPC, were investigated. The results showed that IPC's genome size is approximately 0.98-1.08 GB, and the chromosome number is 2n=30, providing the basic information for further genome analysis. In order to decipher the long-distance dispersal secret of this species, the fruit and seed developments, seed morphology, and seed germination were extensively investigated and described. The results showed an exquisite adaptive mechanism of IPC seeds to fulfil the population expansion via ocean currents. The large cavity inside the seeds and the dense tomenta on the surface provide the buoyancy force for the seeds to float on the seawater. The hard seed coats significantly obstructed the water absorption, thus preventing the seed from germination during the dispersal. Meanwhile, the fully developed embryos of IPC also have physiological dormancy. The physical and physiological characteristics of IPC seeds provide insight into the mechanism of their long-distance dispersal across the oceans. Moreover, based on morphological observation and semi-section microscopy, the development pattern of IPC glander trichomes was described, and their physiological functions were also discussed.

Flora of Pernambuco, Brazil: Ipomoea (Convolvulaceae)

Abstract Ipomoea L. is the largest genus in Convolvulaceae with approximately 150 species reported from Brazil, more than 50% of which are from the northeastern region of the country. The genus is represented by 48 species in Pernambuco state, occurring in Atlantic Forest and Caatinga vegetation as well as areas impacted by human activities. We present here an identification key, photographic documentation, taxonomic comments, and the geographical distributions of species in Pernambuco. New records of Ipomoea cearensis O’Donell, I. hirsutissima Gardner and I. squamosa Choisy for the state are reported.

Appressed, directed and silicified trichomes of the kudzu climbing vine

Kudzu (Pueraria montana var. lobata) is becoming one of the most prevalent climbing vines in urban forests. Here, surface characteristics of kudzu leaves and stems are investigated using field-emission scanning electron microscopy and X-ray microanalysis. The leaf and stem surfaces were characterized by different types of trichomes. No adhesive pads, modified hooks or tendrils were found on kudzu vines. Trichomes on the leaves and stems of kudzu could be categorized into (i) complex bulbous glandular trichomes and (ii) needle-shaped nonglandular trichomes (NSNGTs). Two morphotypes of the nonglandular trichomes were present on the stems: (i) long hairy nonglandular trichomes and (ii) short NSNGTs. The leaf trichomes were appressed and oriented in an uphill direction, whereas the stem trichomes were appressed and oriented in a downhill direction. This opposite trichome orientation appears to facilitate climbing and prohibits slipping of kudzu vines through differential friction between the plants and the kudzu vines. X-ray microanalysis revealed a distinct accumulation of silicon in the leaf and stem trichomes. These results suggest that appressed, directed and silicified trichomes may contribute to the twining behavior of kudzu vines.

Exploring and exploiting genetics and genomics for sweetpotato improvement: Status and perspectives

Sweetpotato (Ipomoea batatas (L.) Lam.) is one of the most important root crops cultivated worldwide. Because of its adaptability, high yield potential, and nutritional value, sweetpotato has become an important food crop, particularly in developing countries. To ensure adequate crop yields to meet increasing demand, it is essential to enhance the tolerance of sweetpotato to environmental stresses and other yield-limiting factors. The highly heterozygous hexaploid genome of I. batatas complicates genetic studies and limits improvement of sweetpotato through traditional breeding. However, application of next-generation sequencing and high-throughput genotyping and phenotyping technologies to sweetpotato genetics and genomics research has provided new tools and resources for crop improvement. In this review, we discuss the genomics resources that are available for sweetpotato, including the current reference genome, databases, and available bioinformatics tools. We systematically review the current state of knowledge on the polyploid genetics of sweetpotato, including studies of its origin and germplasm diversity and the associated mapping of important agricultural traits. We then outline the conventional and molecular breeding approaches that have been applied to sweetpotato. Finally, we discuss future goals for genetic studies of sweetpotato and crop improvement via breeding in combination with state-of-the-art multi-omics approaches such as genomic selection and gene editing. These approaches will advance and accelerate genetic improvement of this important root crop and facilitate its sustainable global production.

Phylogenetic Patterns of Swainsonine Presence in Morning Glories

Endosymbionts play important roles in the life cycles of many macro-organisms. The indolizidine alkaloid swainsonine is produced by heritable fungi that occurs in diverse plant families, such as locoweeds (Fabaceae) and morning glories (Convolvulaceae) plus two species of Malvaceae. Swainsonine is known for its toxic effects on livestock following the ingestion of locoweeds and the potential for pharmaceutical applications. We sampled and tested herbarium seed samples (n = 983) from 244 morning glory species for the presence of swainsonine and built a phylogeny based on available internal transcribed spacer (ITS) sequences of the sampled species. We show that swainsonine occurs only in a single morning glory clade and host species are established on multiple continents. Our results further indicate that this symbiosis developed ∼5 mya and that swainsonine-positive species have larger seeds than their uninfected conspecifics.

Discovery and characterization of sweetpotato's closest tetraploid relative

The origin of sweetpotato, a hexaploid species, is poorly understood, partly because the identity of its tetraploid progenitor remains unknown. In this study, we identify, describe and characterize a new species of Ipomoea that is sweetpotato's closest tetraploid relative known to date and probably a direct descendant of its tetraploid progenitor. We integrate morphological, phylogenetic, and genomic analyses of herbarium and germplasm accessions of the hexaploid sweetpotato, its closest known diploid relative Ipomoea trifida, and various tetraploid plants closely related to them from across the American continent. We identify wild autotetraploid plants from Ecuador that are morphologically distinct from Ipomoea batatas and I. trifida, but monophyletic and sister to I. batatas in phylogenetic analysis of nuclear data. We describe this new species as Ipomoea aequatoriensis T. Wells & P. Muñoz sp. nov., distinguish it from hybrid tetraploid material collected in Mexico; and show that it likely played a direct role in the origin of sweetpotato's hexaploid genome. This discovery transforms our understanding of sweetpotato's origin.

New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon

Ipomoea is a large pantropical genus globally distributed, which importance goes beyond the economic value as food resources or ornamental crops. This highly diverse genus has been the focus of a great number of studies, enriching the plant genomics knowledge, and challenging the plant evolution models. In the Carajás mountain range, located in Eastern Amazon, the savannah-like ferruginous ecosystem known as canga harbors highly specialized plant and animal populations, and Ipomoea is substantially representative in such restrictive habitat. Thus, to provide genetic data and insights into whole plastome phylogenetic relationships among key Ipomoea species from Eastern Amazon with little to none previously available data, we present the complete plastome sequences of twelve lineages of the genus, including the canga microendemic I. cavalcantei, the closely related I. marabaensis, and their putative hybrids. The twelve plastomes presented similar gene content as most publicly available Ipomoea plastomes, although the putative hybrids were correctly placed as closely related to the two parental species. The cavalcantei-marabaensis group was consistently grouped between phylogenetic methods. The closer relationship of the I. carnea plastome with the cavalcantei-marabaensis group, as well as the branch formed by I. quamoclit, I. asarifolia and I. maurandioides, were probably a consequence of insufficient taxonomic representativity, instead of true genetic closeness, reinforcing the importance of new plastome assemblies to resolve inconsistencies and boost statistical confidence, especially the case for South American clades of Ipomoea. The search for k-mers presenting high dispersion among the frequency distributions pointed to highly variable coding and intergenic regions, which may potentially contribute to the genetic diversity observed at species level. Our results contribute to the resolution of uncertain clades within Ipomoea and future phylogenomic studies, bringing unprecedented results to Ipomoea species with restricted distribution, such as I. cavalcantei.

Species as a heuristic: reconciling theory and practice

Species are crucial to most branches of biological research, yet remain controversial in terms of definition, delimitation, and reality. The difficulty of resolving the “species problem” stems from the tension between their theoretical concept as groups of evolving and highly variable organisms and the practical need for a stable and comparable unit of biology. Here, we suggest that treating species as a heuristic can be consistent with a theoretical definition of what species are and with the practical means by which they are identified and delimited. Specifically, we suggest that theoretically species are heuristic since they comprise clusters of closely related individuals responding in a similar manner to comparable sets of evolutionary and ecological forces, whilst they are practically heuristic because they are identifiable by the congruence of contingent properties indicative of those forces. This reconciliation of the theoretical basis of species with their practical applications in biological research allows for a loose but relatively consistent definition of species based on the strategic analysis and integration of genotypic, phenotypic, and ecotypic data. [Cohesion; heuristic; homeostasis; lineage; species problem.]

Crop Wild Relatives (CWR) Priority in Italy: Distribution, Ecology, In Situ and Ex Situ Conservation and Expected Actions

The study presents an updated overview of the 14 non-endemic threatened crop wild relatives (CWR) in Italy: Aegilops biuncialis, Ae. uniaristata, Ae. ventricosa, Asparagus pastorianus, Beta macrocarpa, Brassica insularis, B. montana, Crambe hispanica subsp. hispanica, C. tataria subsp. tataria, Ipomoea sagittata, Lathyrus amphicarpos, L. palustris, Vicia cusnae and V. serinica. Geographical distribution, ecology (with plant communities and habitat 92/43/EEC aspects), genetics (focused on gene pools), property, and in situ and ex situ conservation were analyzed. In addition, with the aim of their protection and valorization, specific actions are recommended.

Ipomoea lanifolia sp. nov. (Convolvulaceae), a new species endemic to the Ibiapaba plateau in northeastern Brazil

Abstract A new species of Ipomoea, thus far endemic to Caatinga domain, is described. The species occurs in a “carrasco” physiognomy - a shrubby vegetation on sandy soils characterized by the presence of cacti and bromeliads. The new species can be recognized by a combination of morphological characters, including a leaf blade with a lanate abaxial surface with long hairs, and sepals lanceolate, acuminate, tomentose, and smooth. A complete description, diagnosis, an identification key for Ipomoea species from the Ibiapaba plateau, illustrations, conservation assessments, a distribution map, and taxonomic comments are provided.

Three New Alien Taxa for Europe and a Chorological Update on the Alien Vascular Flora of Calabria (Southern Italy)

Knowledge on alien species is needed nowadays to protect natural habitats and prevent ecological damage. The presence of new alien plant species in Italy is increasing every day. Calabria, its southernmost region, is not yet well known with regard to this aspect. Thanks to fieldwork, sampling, and observing many exotic plants in Calabria, here, we report new data on 34 alien taxa. In particular, we found three new taxa for Europe (Cascabela thevetia, Ipomoea setosa subsp. pavonii, and Tecoma stans), three new for Italy (Brugmansia aurea, Narcissus 'Cotinga', and Narcissus 'Erlicheer'), one new one for the Italian Peninsula (Luffa aegyptiaca), and 21 new taxa for Calabria (Allium cepa, Asparagus setaceus, Bassia scoparia, Beta vulgaris subsp. vulgaris, Bidens formosa, Casuarina equisetifolia, Cedrus atlantica, Chlorophytum comosum, Cucurbita maxima subsp. maxima, Dolichandra unguis-cati, Fagopyrum esculentum, Freesia alba, Juglans regia, Kalanchoë delagoënsis, Passiflora caerulea, Portulaca grandiflora, Prunus armeniaca, Prunus dulcis, Solanum tuberosum, Tradescantia sillamontana, and Washingtonia filifera). Furthermore, we provide the first geolocalized record of Araujia sericifera, the confirmation of Oxalis stricta, and propose a change of status for four taxa (Cenchrus setaceus, Salpichroa origanifolia, Sesbania punicea, and Nothoscordum gracile) for Calabria. The updated knowledge on the presence of new alien species in Calabria, in Italy and in Europe could allow for the prevention of other new entries and to eliminate this potential ecological threat to natural habitats.

Potential Short-Term Memory Induction as a Promising Method for Increasing Drought Tolerance in Sweetpotato Crop Wild Relatives [Ipomoea series Batatas (Choisy) D. F. Austin]

Crop wild relatives of sweetpotato [Ipomoea series Batatas (Choisy) D. F. Austin] are a group of species with potential for use in crop improvement programs seeking to breed for drought tolerance. Stress memory in this group could enhance these species' physiological response to drought, though no studies have yet been conducted in this area. In this pot experiment, drought tolerance, determined using secondary traits, was tested in 59 sweetpotato crop wild relative accessions using potential short-term memory induction. For this purpose, accessions were subjected to two treatments, i) non-priming: full irrigation (up to field capacity, 0.32 w/w) from transplanting to harvest and ii) priming: full irrigation from transplanting to flowering onset (FO) followed by a priming process from FO to harvest. The priming process consisted of three water restriction periods of increasing length (8, 11, and 14 days) followed each by a recovery period of 14 days with full irrigation. Potential stress memory induction was calculated for each accession based on ecophysiological indicators such as senescence, foliar area, leaf-minus-air temperature, and leaf 13C discrimination. Based on total biomass production, resilience and production capacity were calculated per accession to evaluate drought tolerance. Increase in foliar area, efficient leaf thermoregulation, improvement of leaf photosynthetic performance, and delayed senescence were identified in 23.7, 28.8, 50.8, and 81.4% of the total number of accessions, respectively. It was observed that under a severe drought scenario, a resilient response included more long-lived green leaf area while a productive response was related to optimized leaf thermoregulation and gas exchange. Our preliminary results suggest that I. triloba and I. trifida have the potential to improve sweetpotato resilience in dry environments and should be included in introgression breeding programs of this crop. Furthermore, I. splendor-sylvae, I. ramosissima, I. tiliacea, and wild I. batatas were the most productive species studied but given the genetic barriers to interspecific hybridization between these species and sweetpotato, we suggest that further genetic and metabolic studies be conducted on them. Finally, this study proposes a promising method for improving drought tolerance based on potential stress-memory induction, which is applicable both for wild species and crops.