Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES)

Aquatic connectivity: challenges and solutions in a changing climate

The challenge of managing aquatic connectivity in a changing climate is exacerbated in the presence of additional anthropogenic stressors, social factors, and economic drivers. Here we discuss these issues in the context of structural and functional connectivity for aquatic biodiversity, specifically fish, in both the freshwater and marine realms. We posit that adaptive management strategies that consider shifting baselines and the socio-ecological implications of climate change will be required to achieve management objectives. The role of renewable energy expansion, particularly hydropower, is critically examined for its impact on connectivity. We advocate for strategic spatial planning that incorporates nature-positive solutions, ensuring climate mitigation efforts are harmonized with biodiversity conservation. We underscore the urgency of integrating robust scientific modelling with stakeholder values to define clear, adaptive management objectives. Finally, we call for innovative monitoring and predictive decision-making tools to navigate the uncertainties inherent in a changing climate, with the goal of ensuring the resilience and sustainability of aquatic ecosystems.

Groundwater Amphipods of the Hyporheic Interstitial: A Case Study from Luxembourg and The Greater Region

Hyporheic interstitials are ecologically dynamic and often neglected aquatic environments. In this study, groundwater amphipods (Niphargidae, Pseudoniphargidae and Crangonyctidae) were sampled in hyporheic interstitials throughout Luxembourg and The Greater Region and specimens were analyzed by DNA barcoding. Sites characterized by gravel or coarse sand and high flow velocities of incoming water were the most species- and specimen-rich. A total of 11 species were detected, of which the Niphargus aquilex lineage EF of the N. aquilex cryptic species complex and juveniles of N. schellenbergi dominated the data set, but an unknown lineage of the N. aquilex-complex was also found. Some regions appeared to be devoid of groundwater amphipods. We hypothesize that underlying sandstone formations resulting in low sediment porosity may prevent physical colonization, but also that historical water pollution may have a long-lasting effect, either through the persistence of contaminants in the sediment or low recolonization rates of affected populations. In summary, our approach expanded regional species inventories, confirmed known occurrences, and validated previously questionable or historical morphology-based detections. In addition, the collection of absence data provided valuable insights into local extinctions. Finally, DNA-based distribution data are needed to gather information on the ecological affinities of groundwater amphipods to understudied hyporheic interstitial environments.

Drying shapes the ecological niche of aquatic fungi with implications on ecosystem functioning

Fungi are among the most abundant and diverse organisms on Earth and play pivotal roles in global carbon processing, nutrient cycling and food webs. Despite their abundant and functional importance, little is known about the patterns and mechanisms governing their community composition in intermittent rivers and ephemeral streams, which are the most common fluvial ecosystems globally. Thus far, it is known that aquatic fungi have evolved various life-history strategies and functional adaptations to cope with drying. Nevertheless, some of these adaptations have a metabolic cost and trade-offs between growth, reproduction and dispersion that may affect ecosystem functioning. Thus, understanding their ecological strategies along a gradient of drying is crucial to assess how species will respond to global change and to identify meaningful taxa to maintain ecosystem functions. By combining in situ hydrological information with a niche-based approach, we analysed the role of drying in explaining the spatial segregation of fungal species, and we determined their specialization and affinity over a gradient of drying. In addition, we estimated whether species niches are good predictors of two key ecosystem processes: organic matter decomposition and fungal biomass accrual. Overall, we found that annual drying duration and frequency were the most influential variables upon species niche differentiation across the 15 studied streams. Our cluster analysis identified four drying niche-based groups with contrasting distributions and responses over the drying gradient: drying-sensitive, partly tolerant to drying, generalist, and drying-resistant specialist. In addition, we found that species belonging to the drying specialist group showed a weak contribution to both ecosystem processes, suggesting trade-offs between drying resistance strategies and the energy invested in growth. Taken together, our results suggest that increased water scarcity may jeopardise the capacity of aquatic fungi to guarantee ecosystem functioning and to maintain biogeochemical cycles despite their ability to cope with drying.

Detecting Streamflow in Dryland Rivers Using CubeSats

Determining the flow regime of non-perennial rivers is critical in hydrology. In this study, we developed a new approach using CubeSat imagery to detect streamflow presence using differences in surface reflectance for areas within and outside of a river reach. We calibrated the approach with streamflow records in the Hassayampa River of Arizona over 3 years (2019-2021), finding good agreement in the annual fractions of flowing days at stream gages (R ² = 0.82, p < 0.0001). Subsequently, annual fractions of flowing days were derived at 90 m intervals along the Hassayampa River, finding that 12% of reaches were classified as intermittent, with the remaining as ephemeral. Using a Hovmöller diagram, streamflow presence was visualized in unprecedented spatiotemporal detail, allowing estimates of daily fraction of flowing channel and annual fractions of flowing days. This new tool opens avenues for detecting streamflow and studying hydrological and biogeochemical processes dependent on water presence in drylands.

Probabilistic Description of Streamflow and Active Length Regimes in Rivers

In spite of the prevalence of temporary rivers over a wide range of climatic conditions, they represent a relatively understudied fraction of the global river network. Here, we exploit a well-established hydrological model and a derived distribution approach to develop a coupled probabilistic description for the dynamics of the catchment discharge and the corresponding active network length. Analytical expressions for the flow duration curve (FDC) and the stream length duration curve (SLDC) were derived and used to provide a consistent classification of streamflow and active length regimes in temporary rivers. Two distinct streamflow regimes (persistent and erratic) and three different types of active length regimes (ephemeral, perennial, and ephemeral de facto) were identified depending on the value of two dimensionless parameters. These key parameters, which are related to the underlying streamflow fluctuations and the sensitivity of active length to changes in the catchment discharge (here quantified by the scaling exponent b), originate seven different behavioral classes characterized by contrasting shapes of the underlying SLDCs and FDCs. The analytical model was tested using data gathered in three study catchments located in Italy and USA, with satisfactory model performances in most cases. Our analytical and empirical results show the existence of a structural relationship between streamflow and active length regimes, which is chiefly modulated by the scaling exponent b. The proposed framework represents a promising tool for the coupled analysis of discharge and river network length dynamics in temporary streams.

Global prevalence of non-perennial rivers and streams

Flowing waters have a unique role in supporting global biodiversity, biogeochemical cycles and human societies^1-5. Although the importance of permanent watercourses is well recognized, the prevalence, value and fate of non-perennial rivers and streams that periodically cease to flow tend to be overlooked, if not ignored^6-8. This oversight contributes to the degradation of the main source of water and livelihood for millions of people⁵. Here we predict that water ceases to flow for at least one day per year along 51-60 per cent of the world's rivers by length, demonstrating that non-perennial rivers and streams are the rule rather than the exception on Earth. Leveraging global information on the hydrology, climate, geology and surrounding land cover of the Earth's river network, we show that non-perennial rivers occur within all climates and biomes, and on every continent. Our findings challenge the assumptions underpinning foundational river concepts across scientific disciplines⁹. To understand and adequately manage the world's flowing waters, their biodiversity and functional integrity, a paradigm shift is needed towards a new conceptual model of rivers that includes flow intermittence. By mapping the distribution of non-perennial rivers and streams, we provide a stepping-stone towards addressing this grand challenge in freshwater science.

Water Storage in Dry Riverbeds of Arid and Semi-Arid Regions: Overview, Challenges, and Prospects of Sand Dam Technology

Augmenting water availability using water-harvesting structures is of importance in arid and semi-arid regions (ASARs). This paper provides an overview and examines challenges and prospects of the sand dam application in dry riverbeds of ASARs. The technology filters and protects water from contamination and evaporation with low to no maintenance cost. Sand dams improve the socio-economy of the community and help to cope with drought and climate change. However, success depends on the site selection, design, and construction. The ideal site for a sand dam is at a transition between mountains and plains, with no bend, intermediate slope, and impermeable riverbed in a catchment with a slope greater than 2°. The spillway dimensioning considers the flow velocity, sediment properties, and storage target, and the construction is in multi-stages. Recently, the failure of several sand dams because of incorrect siting, evaporation loss, and one-stage construction were reported. Revision of practitioners’ manuals by considering catchment scale hydrological and hydrogeological characteristics, spillway height, and sediment transport are recommended. Research shows that protected wells have better water quality than open wells and scoop holes. Therefore, the community should avoid open defecation, pit latrines, tethering of animals, and applying pesticides near the sand dam.

Open science in practice: 300 published research ideas and outcomes illustrate how RIO Journal facilitates engagement with the research process

Since Research Ideas and Outcomes was launched in late 2015, it has stimulated experimentation around the publication of and engagement with research processes, especially those with a strong open science component. Here, we zoom in on the first 300 RIO articles that have been published and elucidate how they relate to the different stages and variants of the research cycle, how they help address societal challenges and what forms of engagement have evolved around these resources, most of which have a nature and scope that would prevent them from entering the scholarly record via more traditional journals. Building on these observations, we describe some changes we recently introduced in the policies and peer review process at RIO to further facilitate engagement with the research process, including the establishment of an article collections feature that allows us to bring together research ideas and outcomes from within one research cycle or across multiple ones, irrespective of where they have been published.

Mammal Persistence Along Riparian Forests in Western India Within a Hydropower Reservoir 55 Years Post Construction

While the negative impacts of dam construction on downstream river stretches and riparian forests are well studied, the status of wildlife presence and persistence in upstream reservoir deltas is virtually unknown. We investigated the drivers of terrestrial mammal occupancy and persistence along riparian forests of Koyna reservoir in western India 55 years after its construction. We adopted a catchment-wide field design grounded in the river continuum concept and sampled different stream orders within the reservoir. Camera traps, nested in an occupancy modeling framework, were deployed across 72 riparian sites and replicated for four seasons across all stream types. We recorded a total of nineteen species of terrestrial mammals during the study period. Multi-season occupancy models revealed three key patterns of mammal persistence: (a) ungulates were more frequently photo-captured in riparian forests; gaur and wild pig had the highest proportions of the total sampled area (0.84 ± 0.12 SE; 0.77 ± 0.07 SE, respectively); (b) small-sized ungulates were more vulnerable to local extinction than large-bodied ungulates; extinction probability was highest for barking deer (0.59 ± 0.07) and lowest for sambar (0.15 ± 0.07); and (c) distance from stream played major roles in determining mammal detection. Riparian forests are fundamentally important to ecosystem functioning and biodiversity conservation, and using the data from this study, managers can plan to sustain high mammal persistence along riparian forests at Koyna reservoir or similar Indian reserves. Further, our robust sampling approach, grounded in the terrestrial-riverine continuum concept, can be applied globally to understand species assemblages, aiding in multi-landscape and wildlife management planning.

Alteration of the Ecohydrological Status of the Intermittent Flow Rivers and Ephemeral Streams due to the Climate Change Impact (Case Study: Tsiknias River)

Climate change projections predict the increase of no-rain periods and storm intensity resulting in high hydrologic alteration of the Mediterranean rivers. Intermittent flow Rivers and Ephemeral Streams (IRES) are particularly vulnerable to spatiotemporal variation of climate variables, land use changes and other anthropogenic factors. In this work, the impact of climate change on the aquatic state of IRES is assessed by the combination of the hydrological model Soil and Water Assessment Tool (SWAT) and the Temporary Rivers Ecological and Hydrological Status (TREHS) tool under two different Representative Concentration Pathways (RCP 4.5 and RCP 8.5) using CORDEX model simulations. A significant decrease of 20–40% of the annual flow of the examined river (Tsiknias River, Greece) is predicted during the next 100 years with an increase in the frequency of extreme flood events as captured with almost all Regional Climate Models (RCMs) simulations. The occurrence patterns of hyporheic and edaphic aquatic states show a temporal extension of these states through the whole year due to the elongation of the dry period. A shift to the Intermittent-Pools regime type shows dominance according to numerous climate change scenarios, harming, as a consequence, both the ecological system and the social-economic one.

Subsurface zones in intermittent streams are hotspots of microbial decomposition during the non-flow period

The microbial decomposition of organic matter is a fundamental ecosystem process that transforms organic matter and fuels detritus-based food webs, influencing biogeochemical cycles such as C-cycling. The efficiency of this process can be compromised during the non-flow periods of intermittent and ephemeral streams (IRES). When water flow ceases, sediments represent the last wet habitat available to microorganisms and may play an important role in sustaining microbial decomposition. However, despite the increasing prevalence of IRES due to climate change and water abstraction, it is unclear to what degree the subsurface habitat can sustain microbial decomposition during non-flow periods. In order to gather information, we selected 20 streams across Catalonia (Spain) along a gradient of flow intermittency, where we measured microbial decomposition and fungal biomass by placing wood sticks in both the surface and subsurface zones (15 cm below the streambed) over the course of one hydrological year. Our results showed that microbial decomposition and fungal biomass were consistently greater in the subsurface zone than in the surface zone, when intermittency increased. Although flow intermittency was the main driver of both microbial decomposition and fungal biomass, phosphorus availability in the water, sediment C:N ratio and sediment grain size also played relevant roles in surface and subsurface organic matter processing. Thus, our findings demonstrate that although the OM processing in both zones decreases with increased intermittency, the subsurface zone made an important contribution during the non-flow periods in IRES. Therefore, subsurface activity during non-flow periods has the potential to affect and maintain ecosystem functioning.

An Intermittent Karst River: The Case of the Čikola River (Dinaric Karst, Croatia)

Intermittent and ephemeral streams (IRES) are responsible for transporting about half of the water on Earth’s surface. Their hydrological behavior is different in various landscapes. IRES are found more often in karst terrains than in any other regions, as a consequence of strong and direct interaction between groundwater and surface water. This paper presents a hydrogeological and hydrological analysis of the intermittent Čikola River and Spring catchment, which is located in deeply karstified and developed parts of the Dinaric karst in Croatia. Hydrological calculations determined that the catchment area covers approximately 300 km2 and very probably changes in accordance with rapid variations in groundwater level. The karst spring of the Čikola River is a cave, extracted for a public water supply with four drilled extraction wells. The results of the interrelated hydrological and hydrogeological analysis show interesting phenomena from an intermittent karst spring (cave) and its catchment, flowing downstream through a karst polje with several smaller confluences, then entering a karst canyon (where the river sinks during certain periods), and ending in an estuary before contributing to the larger Krka River. The research presented was based on water balance calculations, climatic and hydrological time series analyses, spring pumping tests, and thorough hydrogeological interpretation.

A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy

The hyporheic zone, i.e. the ecotone between surface water and the groundwater, is a rarely studied freshwater ecosystem. Hyporheic taxa are often meiofaunal (&lt;1 mm) in size and difficult to identify based on morphology. Metabarcoding approaches are promising for the study of these environments and taxa, but it is yet unclear if commonly applied metabarcoding primers and replication strategies can be used. In this study, we took sediment cores from two near natural upstream (NNU) and two ecologically improved downstream (EID) sites in the Boye catchment (Emscher River, Germany), metabarcoding their meiofaunal communities. We evaluated the usability of a commonly used, highly degenerate COI primer pair (BF2/BR2) and tested how sequencing three PCR replicates per sample and removing MOTUs present in only one out of three replicates impacts the inferred community composition. A total of 22,514 MOTUs were detected, of which only 263 were identified as Metazoa. Our results highlight the gaps in reference databases for meiofaunal taxa and the potential problems of using highly degenerate primers for studying samples containing a high number of non-metazoan taxa. Alpha diversity was higher in EID sites and showed higher community similarity when compared to NNU sites. Beta diversity analyses showed that removing MOTUs detected in only one out of three replicates per site greatly increased community similarity in samples. Sequencing three sample replicates and removing rare MOTUs is seen as a good compromise between retaining too many false-positives and introducing too many false-negatives. We conclude that metabarcoding hyporheic communities using highly degenerate COI primers can provide valuable first insights into the diversity of these ecosystems and highlight some potential application scenarios.