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For: Guan Y, Li Z, Wang S, Barnes PM, Liu X, Xu H, Jin M, Liu AP, Yang Q. A robust and tunable mitotic oscillator in artificial cells. eLife 2018;7:33549. [PMID: 29620527 PMCID: PMC5922972 DOI: 10.7554/elife.33549] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Accepted: 04/04/2018] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
Takamori S, Mimura H, Osaki T, Kondo T, Shintomi M, Shintomi K, Ohsugi M, Takeuchi S. Nuclear Assembly in Giant Unilamellar Vesicles Encapsulating Xenopus Egg Extract. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2025:e2412126. [PMID: 40390663 DOI: 10.1002/smll.202412126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Revised: 03/17/2025] [Indexed: 05/21/2025]
2
Rombouts J, Tavella F, Vandervelde A, Phong C, Ferrell JE, Yang Q, Gelens L. Mechanistic origins of temperature scaling in the early embryonic cell cycle. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.12.24.630245. [PMID: 39763717 PMCID: PMC11703202 DOI: 10.1101/2024.12.24.630245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/15/2025]
3
Choi AA, Zhou CY, Tabo A, Heald R, Xu K. Single-molecule diffusivity quantification in Xenopus egg extracts elucidates physicochemical properties of the cytoplasm. Proc Natl Acad Sci U S A 2024;121:e2411402121. [PMID: 39636857 DOI: 10.1073/pnas.2411402121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Accepted: 11/10/2024] [Indexed: 12/07/2024]  Open
4
Puls O, Ruiz-Reynés D, Tavella F, Jin M, Kim Y, Gelens L, Yang Q. Spatial heterogeneity accelerates phase-to-trigger wave transitions in frog egg extracts. Nat Commun 2024;15:10455. [PMID: 39622792 PMCID: PMC11612452 DOI: 10.1038/s41467-024-54752-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 11/19/2024] [Indexed: 12/06/2024]  Open
5
Choi AA, Zhou CY, Tabo A, Heald R, Xu K. Single-molecule diffusivity quantification in Xenopus egg extracts elucidates physicochemical properties of the cytoplasm. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.24.609541. [PMID: 39253443 PMCID: PMC11383024 DOI: 10.1101/2024.08.24.609541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/11/2024]
6
Huang JH, Chen Y, Huang WYC, Tabatabaee S, Ferrell JE. Robust trigger wave speed in Xenopus cytoplasmic extracts. Nat Commun 2024;15:5782. [PMID: 38987269 PMCID: PMC11237086 DOI: 10.1038/s41467-024-50119-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 07/01/2024] [Indexed: 07/12/2024]  Open
7
Garfinkel AM, Ilker E, Miyazawa H, Schmeisser K, Tennessen JM. Historic obstacles and emerging opportunities in the field of developmental metabolism - lessons from Heidelberg. Development 2024;151:dev202937. [PMID: 38912552 PMCID: PMC11299503 DOI: 10.1242/dev.202937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
8
Li Z, Wang S, Sun M, Jin M, Khain D, Yang Q. Comprehensive Parameter Space Mapping of Cell Cycle Dynamics under Network Perturbations. ACS Synth Biol 2024;13:804-815. [PMID: 38420905 DOI: 10.1021/acssynbio.3c00631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
9
Puls O, Ruiz-Reynés D, Tavella F, Jin M, Kim Y, Gelens L, Yang Q. Mitotic waves in frog egg extracts: Transition from phase waves to trigger waves. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.18.576267. [PMID: 38496576 PMCID: PMC10942321 DOI: 10.1101/2024.01.18.576267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/19/2024]
10
Huang WYC, Ferrell JE, Cheng X. Measuring Molecular Diffusion in Self-Organizing Xenopus Extracts by Fluorescence Correlation Spectroscopy. Methods Mol Biol 2024;2740:107-115. [PMID: 38393471 DOI: 10.1007/978-1-0716-3557-5_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2024]
11
Huang JH, Chen Y, Huang WYC, Tabatabaee S, Ferrell JE. Robust trigger wave speed in Xenopus cytoplasmic extracts. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.22.573127. [PMID: 38187567 PMCID: PMC10769400 DOI: 10.1101/2023.12.22.573127] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
12
Zhong Z, Lin W, Qin BW. Modulating Biological Rhythms: A Noncomputational Strategy Harnessing Nonlinearity and Decoupling Frequency and Amplitude. PHYSICAL REVIEW LETTERS 2023;131:138401. [PMID: 37832005 DOI: 10.1103/physrevlett.131.138401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 07/17/2023] [Accepted: 08/30/2023] [Indexed: 10/15/2023]
13
Rombouts J, Verplaetse S, Gelens L. The ups and downs of biological oscillators: a comparison of time-delayed negative feedback mechanisms. J R Soc Interface 2023;20:20230123. [PMID: 37376871 PMCID: PMC10300510 DOI: 10.1098/rsif.2023.0123] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 05/31/2023] [Indexed: 06/29/2023]  Open
14
Chen M, Wang R. Computational analysis of synergism in small networks with different logic. J Biol Phys 2023;49:1-27. [PMID: 36580168 PMCID: PMC9958226 DOI: 10.1007/s10867-022-09620-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 12/12/2022] [Indexed: 12/30/2022]  Open
15
Chen P, Levy DL. Regulation of organelle size and organization during development. Semin Cell Dev Biol 2023;133:53-64. [PMID: 35148938 PMCID: PMC9357868 DOI: 10.1016/j.semcdb.2022.02.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 01/20/2022] [Accepted: 02/01/2022] [Indexed: 12/11/2022]
16
Maryu G, Yang Q. Nuclear-cytoplasmic compartmentalization of cyclin B1-Cdk1 promotes robust timing of mitotic events. Cell Rep 2022;41:111870. [PMID: 36577372 DOI: 10.1016/j.celrep.2022.111870] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 11/15/2022] [Accepted: 12/01/2022] [Indexed: 12/28/2022]  Open
17
Liu S, Tan C, Tyers M, Zetterberg A, Kafri R. What programs the size of animal cells? Front Cell Dev Biol 2022;10:949382. [PMID: 36393871 PMCID: PMC9665425 DOI: 10.3389/fcell.2022.949382] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 09/07/2022] [Indexed: 01/19/2023]  Open
18
Huang WYC, Cheng X, Ferrell JE. Cytoplasmic organization promotes protein diffusion in Xenopus extracts. Nat Commun 2022;13:5599. [PMID: 36151204 PMCID: PMC9508076 DOI: 10.1038/s41467-022-33339-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2021] [Accepted: 09/12/2022] [Indexed: 11/25/2022]  Open
19
Dupin A, Aufinger L, Styazhkin I, Rothfischer F, Kaufmann BK, Schwarz S, Galensowske N, Clausen-Schaumann H, Simmel FC. Synthetic cell-based materials extract positional information from morphogen gradients. SCIENCE ADVANCES 2022;8:eabl9228. [PMID: 35394842 PMCID: PMC8993112 DOI: 10.1126/sciadv.abl9228] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 02/17/2022] [Indexed: 05/19/2023]
20
Microtubule and Actin Cytoskeletal Dynamics in Male Meiotic Cells of Drosophila melanogaster. Cells 2022;11:cells11040695. [PMID: 35203341 PMCID: PMC8870657 DOI: 10.3390/cells11040695] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 02/11/2022] [Accepted: 02/14/2022] [Indexed: 01/12/2023]  Open
21
Jin M, Tavella F, Wang S, Yang Q. In vitro cell cycle oscillations exhibit a robust and hysteretic response to changes in cytoplasmic density. Proc Natl Acad Sci U S A 2022;119:e2109547119. [PMID: 35101974 PMCID: PMC8832984 DOI: 10.1073/pnas.2109547119] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 11/17/2021] [Indexed: 12/25/2022]  Open
22
Ali Al-Radhawi M, Margaliot M, Sontag ED. Maximizing average throughput in oscillatory biochemical synthesis systems: an optimal control approach. ROYAL SOCIETY OPEN SCIENCE 2021;8:210878. [PMID: 34567591 PMCID: PMC8456142 DOI: 10.1098/rsos.210878] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 08/16/2021] [Indexed: 05/03/2023]
23
Gai Y, Cook B, Setru S, Stone HA, Petry S. Confinement size determines the architecture of Ran-induced microtubule networks. SOFT MATTER 2021;17:5921-5931. [PMID: 34041514 PMCID: PMC8958645 DOI: 10.1039/d1sm00045d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
24
Sun M, Maryu G, Wang S, Yang Q, Bailey RC. Plug-in tubes allow tunable oil removal, droplet packing, and reaction incubation for time-controlled droplet-based assays. BIOMICROFLUIDICS 2021;15:024108. [PMID: 33841602 PMCID: PMC8024030 DOI: 10.1063/5.0047924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 03/20/2021] [Indexed: 06/12/2023]
25
Xiao Y, Jin L, Deng C, Guan Y, Kalogera E, Ray U, Thirusangu P, Staub J, Sarkar Bhattacharya S, Xu H, Fang X, Shridhar V. Inhibition of PFKFB3 induces cell death and synergistically enhances chemosensitivity in endometrial cancer. Oncogene 2021;40:1409-1424. [PMID: 33420377 PMCID: PMC7906909 DOI: 10.1038/s41388-020-01621-4] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 12/05/2020] [Accepted: 12/11/2020] [Indexed: 02/07/2023]
26
Groaz A, Moghimianavval H, Tavella F, Giessen TW, Vecchiarelli AG, Yang Q, Liu AP. Engineering spatiotemporal organization and dynamics in synthetic cells. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2020;13:e1685. [PMID: 33219745 DOI: 10.1002/wnan.1685] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 10/13/2020] [Accepted: 10/30/2020] [Indexed: 12/28/2022]
27
Cho E, Lu Y. Compartmentalizing Cell-Free Systems: Toward Creating Life-Like Artificial Cells and Beyond. ACS Synth Biol 2020;9:2881-2901. [PMID: 33095011 DOI: 10.1021/acssynbio.0c00433] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
28
Noireaux V, Liu AP. The New Age of Cell-Free Biology. Annu Rev Biomed Eng 2020;22:51-77. [DOI: 10.1146/annurev-bioeng-092019-111110] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
29
Nolet FE, Vandervelde A, Vanderbeke A, Piñeros L, Chang JB, Gelens L. Nuclei determine the spatial origin of mitotic waves. eLife 2020;9:e52868. [PMID: 32452767 PMCID: PMC7314552 DOI: 10.7554/elife.52868] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 05/22/2020] [Indexed: 12/11/2022]  Open
30
Prangemeier T, Lehr FX, Schoeman RM, Koeppl H. Microfluidic platforms for the dynamic characterisation of synthetic circuitry. Curr Opin Biotechnol 2020;63:167-176. [PMID: 32172160 DOI: 10.1016/j.copbio.2020.02.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 01/31/2020] [Accepted: 02/03/2020] [Indexed: 01/28/2023]
31
Wesley CC, Mishra S, Levy DL. Organelle size scaling over embryonic development. WILEY INTERDISCIPLINARY REVIEWS-DEVELOPMENTAL BIOLOGY 2020;9:e376. [PMID: 32003549 DOI: 10.1002/wdev.376] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 12/19/2019] [Accepted: 01/08/2020] [Indexed: 12/13/2022]
32
Mitchison TJ, Field CM. Toward synthetic cells. Science 2019;366:569-570. [DOI: 10.1126/science.aaz5635] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
33
Sun M, Li Z, Wang S, Maryu G, Yang Q. Building Dynamic Cellular Machineries in Droplet-Based Artificial Cells with Single-Droplet Tracking and Analysis. Anal Chem 2019;91:9813-9818. [PMID: 31284720 PMCID: PMC7260773 DOI: 10.1021/acs.analchem.9b01481] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
34
Sun M, Li Z, Yang Q. μdroPi: A Hand-Held Microfluidic Droplet Imager and Analyzer Built on Raspberry Pi. JOURNAL OF CHEMICAL EDUCATION 2019;96:1152-1156. [PMID: 32483390 PMCID: PMC7263740 DOI: 10.1021/acs.jchemed.8b00975] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
35
Dubuc E, Pieters PA, van der Linden AJ, van Hest JC, Huck WT, de Greef TF. Cell-free microcompartmentalised transcription-translation for the prototyping of synthetic communication networks. Curr Opin Biotechnol 2018;58:72-80. [PMID: 30594098 PMCID: PMC6723619 DOI: 10.1016/j.copbio.2018.10.006] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Accepted: 10/14/2018] [Indexed: 12/21/2022]
36
Guan Y, Wang S, Jin M, Xu H, Yang Q. Reconstitution of Cell-cycle Oscillations in Microemulsions of Cell-free Xenopus Egg Extracts. J Vis Exp 2018:58240. [PMID: 30320763 PMCID: PMC6235322 DOI: 10.3791/58240] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]  Open
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