A hypothesis on the capacity of plant odorant-binding proteins to bind volatile isoprenoids based on in silico evidences

Plant volatile organic compounds: Emission and perception in a changing world

Volatile organic compounds (VOCs) are produced by all kingdoms of life and play crucial roles in mediating the communication between organisms and their environment through emission and perception. Plants, in particular, produce and emit an exceptional variety of VOCs that together serve as a complex chemical language facilitating intra-plant, inter-plant, plant-animal, and plant-microbe interactions. VOC signals are perceived and decrypted by receiver plants; however, the emission, composition, distribution and effective range, as well as uptake of these infochemicals depend on temperature and atmospheric chemistry in addition to their physicochemical properties. Since both emission and perception are directly affected by ongoing climate change, research into these processes is urgently needed to develop mitigation strategies against this threat to plant communication networks. In this brief review, we highlight the recent advances about plant VOC emission and perception, emphasizing the effect of the current climate crisis on these processes. Despite some progress in understanding VOC emission and perception, significant gaps remain in elucidating their molecular mechanisms in plants.

Structure-Function Analysis of Volatile (Z)-3-Fatty Alcohols in Tomato

Plants emit green leaf volatiles (GLVs) in response to biotic and abiotic stress. Receiver plants perceive GLVs as alarm cues resulting in activation of defensive or protective mechanisms. While this is well documented, it is not known how GLVs are perceived by receiver cells and what the structural determinants are for GLV activity. We tested whether the carbon chain length in (Z)-3-fatty alcohols with four to nine carbons and the double bonds in six-carbon alcohols contribute to bioactivity. In Solanum peruvianum suspension-cultured cells we found that (Z)-3-fatty alcohols, except (Z)-3-butenol, induce medium alkalinization and MAP kinase phosphorylation, two signaling responses often tied to the perception of molecular patterns that function in plant immunity and resistance to herbivores. In tomato (S. lycopersicum) seedlings, we found that (Z)-3-fatty alcohols induce inhibition of root growth. In both signaling and physiological responses, (Z)-3-octenol and (Z)-3-nonenol had a higher bioactivity than (Z)-3-heptenol and (Z)-3-hexenol, with (Z)-3-butenol only being active in root growth assays. Bioactivity correlated not only with chain length but also with lipophilicity of the fatty alcohols. The natural GLVs (E)-2-hexenol and the saturated 1-hexanol exhibited a higher bioactivity in pH assays than (Z)-3-hexenol, indicating that the presence and position of a double bond also contributes to bioactivity. Our results indicate that perceiving mechanisms for (Z)-3-fatty alcohols show a preference for longer chain fatty alcohols or that longer chain fatty alcohols are more accessible to receptors.

Cracking the plant VOC sensing code and its practical applications

Volatile organic compounds (VOCs) are essential airborne mediators of interactions between plants. These plant-plant interactions require sophisticated VOC-sensing mechanisms that enable plants to regulate their defenses against pests. However, these interactions are not limited to specific plants or even conspecifics, and can function in very flexible interactions between plants. Sensing and responding to VOCs in plants is finely controlled by their uptake and transport systems as well as by cellular signaling via, for example, chromatin remodeling system-based transcriptional regulation for defense gene activation. Based on the accumulated knowledge about the interactions between plants and their major VOCs, companion plants and biostimulants are being developed for practical applications in agricultural and horticultural pest control, providing a sustainable alternative to harmful chemicals.

Fungal volatile organic compounds: mechanisms involved in their sensing and dynamic communication with plants

Microbial volatile organic compounds (MVOCs) are mixtures of gas-phase hydrophobic carbon-based molecules produced by microorganisms such as bacteria and fungi. They can act as airborne signals sensed by plants being crucial players in triggering signaling cascades influencing their secondary metabolism, development, and growth. The role of fungal volatile organic compounds (FVOCs) from beneficial or detrimental species to influence the physiology and priming effect of plants has been well studied. However, the plants mechanisms to discern between FVOCs from friend or foe remains significantly understudied. Under this outlook, we present an overview of the VOCs produced by plant-associate fungal species, with a particular focus on the challenges faced in VOCs research: i) understanding how plants could perceive FVOCs, ii) investigating the differential responses of plants to VOCs from beneficial or detrimental fungal strains, and finally, iii) exploring practical aspects related to the collection of VOCs and their eco-friendly application in agriculture.

Sirtuin Inhibitor Cambinol Induces Cell Differentiation and Differently Interferes with SIRT1 and 2 at the Substrate Binding Site

Epigenetic mechanisms finely regulate gene expression and represent potential therapeutic targets. Cambinol is a synthetic heterocyclic compound that inhibits class III histone deacetylases known as sirtuins (SIRTs). The acetylating action that results could be crucial in modulating cellular functions via epigenetic regulations. The main aim of this research was to investigate the effects of cambinol, and its underlying mechanisms, on cell differentiation by combining wet experiments with bioinformatics analyses and molecular docking simulations. Our in vitro study evidenced the ability of cambinol to induce the differentiation in MCF-7, NB4, and 3T3-L1 cell lines. Interestingly, focusing on the latter that accumulated cytoplasmic lipid droplets, the first promising results related to the action mechanisms of cambinol have shown the induction of cell cycle-related proteins (such as p16 and p27) and modulation of the expression of Rb protein and nuclear receptors related to cell differentiation. Moreover, we explored the inhibitory mechanism of cambinol on human SIRT1 and 2 performing in silico molecular simulations by protein-ligand docking. Cambinol, unlike from other sirtuin inhibitors, is able to better interact with the substrate binding site of SIRT1 than with the inhibition site. Additionally, for SIRT2, cambinol partially interacts with the substrate binding site, although the inhibition site is preferred. Overall, our findings suggest that cambinol might contribute to the development of an alternative to the existing epigenetic therapies that modulate SIRTs.

Unearthing the alteration in plant volatiles induced by mycorrhizal fungi: A shield against plant pathogens

Plants produce a large range of structurally varied low molecular weight secondary metabolites, which evaporate, known as volatile organic compounds (VOCs). Several of them are emitted in response to biotic stress as a defensive measure against pathogen attacks. Arbuscular Mycorrhizal Fungi (AMFs) can change the VOC pattern in parts of the plant and may promote plant defense via direct or indirect mechanisms. Mycorrhization of plants positively affects plant immunization along with growth and yield. The presence of AMF may raise the concentration of phenolic compounds and the activity of critical defense-related enzymes. AMF-induced changes in plant chemistry and associated volatile emissions lead to stronger immunity against pathogenic microorganisms. Despite substantial research into the origins of diversity in VOC-mediated plant communication, very little is known about the mechanism of influence of several AMFs on plant VOC emissions and modulation of plant immunization. Moreover, the molecular mechanism for VOC sensing in plants and mycorrhizal association is still unclear. In the present review, we have presented an up-to-date understanding of the cross-talk of AMF and VOC patterns in plants and the subsequent modulation of resistance against microbial pathogens.

From single- to multi-omics: future research trends in medicinal plants

Medicinal plants are the main source of natural metabolites with specialised pharmacological activities and have been widely examined by plant researchers. Numerous omics studies of medicinal plants have been performed to identify molecular markers of species and functional genes controlling key biological traits, as well as to understand biosynthetic pathways of bioactive metabolites and the regulatory mechanisms of environmental responses. Omics technologies have been widely applied to medicinal plants, including as taxonomics, transcriptomics, metabolomics, proteomics, genomics, pangenomics, epigenomics and mutagenomics. However, because of the complex biological regulation network, single omics usually fail to explain the specific biological phenomena. In recent years, reports of integrated multi-omics studies of medicinal plants have increased. Until now, there have few assessments of recent developments and upcoming trends in omics studies of medicinal plants. We highlight recent developments in omics research of medicinal plants, summarise the typical bioinformatics resources available for analysing omics datasets, and discuss related future directions and challenges. This information facilitates further studies of medicinal plants, refinement of current approaches and leads to new ideas.

Exploring plant volatile-mediated interactions between native and introduced plants and insects

In invasion scenarios, native and introduced species co-occur creating new interactions and modifying existing ones. Many plant–plant and plant–insect interactions are mediated by volatile organic compounds (VOCs), however, these have seldom been studied in an invasion context. To fill this knowledge gap, we explored some interactions mediated by VOCs between native and introduced plants and insects in a New Zealand system. We investigated whether a native plant, Leptospermum scoparium (mānuka), changes its volatile profile when grown adjacent to two European introduced plants, Calluna vulgaris (heather) and Cytisus scoparius (Scotch broom), in a semi-field trial using potted plants without above- or below-ground physical contact. We also investigated the influence of plant cues on the host-searching behaviour of two beetles, the native Pyronota festiva (mānuka beetle), and the introduced biocontrol agent Lochmaea suturalis (heather beetle), by offering them their host-plant and non-host volatiles versus clean air, and their combination in a Y-tube olfactometer. As a follow-up, we performed preference/feeding tests in Petri dishes with fresh plant material. Results of the semi-field experiment show a significant reduction in green leaf volatiles, sesquiterpenes and total volatile emissions by mānuka plants neighbouring heather. In the Y-tube assays, the native beetle P. festiva performed poorly in discriminating between host and non-host plants based on plant volatile cues only. However, it performed relatively well in the Petri dish tests, where other cues (i.e., visual, gustatory or tactile) were present. In contrast, the introduced beetle L. suturalis showed high host-specificity in both Y-tube and Petri dish assays. This study illustrates the importance of VOCs in mediating interactions between introduced and native species, suggesting that invasive plants can disrupt native plants’ communication and affect the host-searching behaviour of native insects. It also reinforces the relevance of regular host testing on introduced weed biocontrol agents to avoid unwanted host shifts or host-range expansion.

Volatile uptake, transport, perception, and signaling shape a plant's nose

Herbivore-induced plant volatiles regulate defenses in undamaged neighboring plants. Understanding the mechanisms by which plant volatiles are taken up, perceived, and translated into canonical defense signaling pathways is an important frontier of knowledge. Volatiles can enter plants through stomata and the cuticle. They are likely perceived by membrane-associated receptors as well as intracellular receptors. The latter likely involves metabolization and transport across cell membranes by volatile transporters. Translation of volatiles into defense priming and induction typically involves mitogen-activated protein kinases (MAPKs), WRKY transcription factors, and jasmonates. We propose that the broad range of molecular processes involved in volatile signaling will likely result in substantial spatiotemporal and ontogenetic variation in plant responsiveness to volatiles, with important consequences for plant–environment interactions.

How do plants sense volatiles sent by other plants?

Plants communicate via the emission of volatile organic compounds (VOCs) with many animals as well as other plants. We still know little about how VOCs are perceived by receiving (eavesdropping) plants. Here we propose a multiple system of VOC perception, where stress-induced VOCs dock on odorant-binding proteins (OBPs) like in animals and are transported to as-yet-unknown receptors mediating downstream metabolic and/or behavioral changes. Constitutive VOCs that are broadly and lifelong emitted by plants do not bind OBPs but may directly change the metabolism of eavesdropping plants. Deciphering how plants listen to their talking neighbors could empower VOCs as a tool for bioinspired strategies of plant defense when challenged by abiotic and biotic stresses.