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Rojas LJ, Weinstock GM, De La Cadena E, Diaz L, Rios R, Hanson BM, Brown JS, Vats P, Phillips DS, Nguyen H, Hujer KM, Correa A, Adams MD, Perez F, Sodergren E, Narechania A, Planet PJ, Villegas MV, Bonomo RA, Arias CA. An Analysis of the Epidemic of Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae: Convergence of Two Evolutionary Mechanisms Creates the "Perfect Storm". J Infect Dis 2017; 217:82-92. [PMID: 29029188 PMCID: PMC5853647 DOI: 10.1093/infdis/jix524] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Accepted: 09/22/2017] [Indexed: 01/11/2023] Open
Abstract
Background Carbapenem resistance is a critical healthcare challenge worldwide. Particularly concerning is the widespread dissemination of Klebsiella pneumoniae carbapenemase (KPC). Klebsiella pneumoniae harboring blaKPC (KPC-Kpn) is endemic in many areas including the United States, where the epidemic was primarily mediated by the clonal dissemination of Kpn ST258. We postulated that the spread of blaKPC in other regions occurs by different and more complex mechanisms. To test this, we investigated the evolution and dynamics of spread of KPC-Kpn in Colombia, where KPC became rapidly endemic after emerging in 2005. Methods We sequenced the genomes of 133 clinical isolates recovered from 24 tertiary care hospitals located in 10 cities throughout Colombia, between 2002 (before the emergence of KPC-Kpn) and 2014. Phylogenetic reconstructions and evolutionary mapping were performed to determine temporal and genetic associations between the isolates. Results Our results indicate that the start of the epidemic was driven by horizontal dissemination of mobile genetic elements carrying blaKPC-2, followed by the introduction and subsequent spread of clonal group 258 (CG258) isolates containing blaKPC-3. Conclusions The combination of 2 evolutionary mechanisms of KPC-Kpn within a challenged health system of a developing country created the "perfect storm" for sustained endemicity of these multidrug-resistant organisms in Colombia.
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Affiliation(s)
- Laura J Rojas
- Department of Molecular Biology and Microbiology, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Education and Clinical Center, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Ohio
| | | | - Elsa De La Cadena
- Bacterial Resistance and Hospital Epidemiology Unit, International Center for Medical Research and Training (CIDEIM), Cali, Colombia
- Molecular Genetics and Antimicrobial Resistance Unit - International Center for Microbial Genomics Universidad El Bosque, Bogotá, Colombia
| | - Lorena Diaz
- Molecular Genetics and Antimicrobial Resistance Unit - International Center for Microbial Genomics Universidad El Bosque, Bogotá, Colombia
- Center for Antimicrobial Resistance and Microbial Genomics, Division of Infectious Diseases, University of Texas McGovern Medical School at Houston Houston, Texas
| | - Rafael Rios
- Molecular Genetics and Antimicrobial Resistance Unit - International Center for Microbial Genomics Universidad El Bosque, Bogotá, Colombia
| | - Blake M Hanson
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Joseph S Brown
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Purva Vats
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Daniel S Phillips
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Hoan Nguyen
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Kristine M Hujer
- Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Education and Clinical Center, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Ohio
| | - Adriana Correa
- Bacterial Resistance and Hospital Epidemiology Unit, International Center for Medical Research and Training (CIDEIM), Cali, Colombia
| | - Mark D Adams
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Federico Perez
- Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Research Service, Medical Service, and Geriatric Research
- Education and Clinical Center, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Ohio
| | - Erica Sodergren
- The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut
| | - Apurva Narechania
- Center for Infectious Diseases, UTHealth School of Public Health, Houston, Texas
| | - Paul J Planet
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York
- Perelman School of Medicine, University of Pennsylvania, Philadelphia
- Pediatric Infectious Disease Division, Children’s Hospital of Philadelphia, Pennsylvania
| | - Maria V Villegas
- Bacterial Resistance and Hospital Epidemiology Unit, International Center for Medical Research and Training (CIDEIM), Cali, Colombia
- Molecular Genetics and Antimicrobial Resistance Unit - International Center for Microbial Genomics Universidad El Bosque, Bogotá, Colombia
| | - Robert A Bonomo
- Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Department of Molecular Biology and Microbiology, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Department of Biochemistry, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Department of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Department of Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, Ohio
- Research Service, Medical Service, and Geriatric Research
- Education and Clinical Center, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Ohio
- Case Western Reserve University -Cleveland VAMC Center for Antimicrobial Resistance and Epidemiology, Ohio
| | - Cesar A Arias
- Molecular Genetics and Antimicrobial Resistance Unit - International Center for Microbial Genomics Universidad El Bosque, Bogotá, Colombia
- Center for Antimicrobial Resistance and Microbial Genomics, Division of Infectious Diseases, University of Texas McGovern Medical School at Houston Houston, Texas
- Department of Microbiology and Molecular Genetics, University of Texas Medical School at Houston Houston, Texas
- Center for Infectious Diseases, UTHealth School of Public Health, Houston, Texas
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Donado-Godoy P, Castellanos R, León M, Arevalo A, Clavijo V, Bernal J, León D, Tafur MA, Byrne BA, Smith WA, Perez-Gutierrez E. The Establishment of the Colombian Integrated Program for Antimicrobial Resistance Surveillance (COIPARS): A Pilot Project on Poultry Farms, Slaughterhouses and Retail Market. Zoonoses Public Health 2015; 62 Suppl 1:58-69. [DOI: 10.1111/zph.12192] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Indexed: 11/28/2022]
Affiliation(s)
- P. Donado-Godoy
- Corporación Colombiana de Investigación Agropecuaria; Centro de Biotecnología y Bioindustria; Cundinamarca Colombia
| | - R. Castellanos
- Corporación Colombiana de Investigación Agropecuaria; Centro de Biotecnología y Bioindustria; Cundinamarca Colombia
| | - M. León
- Instituto Colombiano Agropecuario; Bogotá DC Colombia
| | - A. Arevalo
- Corporación Colombiana de Investigación Agropecuaria; Centro de Biotecnología y Bioindustria; Cundinamarca Colombia
| | - V. Clavijo
- Corporación Colombiana de Investigación Agropecuaria; Centro de Biotecnología y Bioindustria; Cundinamarca Colombia
| | - J. Bernal
- Corporación Colombiana de Investigación Agropecuaria; Centro de Biotecnología y Bioindustria; Cundinamarca Colombia
| | - D. León
- Corporación Colombiana de Investigación Agropecuaria; Centro de Biotecnología y Bioindustria; Cundinamarca Colombia
| | - M. A. Tafur
- Instituto Colombiano Agropecuario; Bogotá DC Colombia
| | - B. A. Byrne
- School of Veterinary Medicine; University of California; Davis CA USA
| | - W. A. Smith
- School of Veterinary Medicine; University of California; Davis CA USA
| | - E. Perez-Gutierrez
- Pan American Health Organization; Regional Office for the Americas of the World Health Organization; Washington DC USA
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Draft Genome Sequences of Multidrug-Resistant Acinetobacter sp. Strains from Colombian Hospitals. GENOME ANNOUNCEMENTS 2013; 1:1/6/e00868-13. [PMID: 24285656 PMCID: PMC3869318 DOI: 10.1128/genomea.00868-13] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The draft genome sequences of the strains Acinetobacter baumannii 107m, Acinetobacter nosocomialis 28F, and Acinetobacter pittii 42F, isolated from Colombian hospitals, are reported here. These isolates are causative of nosocomial infections and are classified as multidrug resistant, as they showed resistance to four different antibiotic groups.
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Ruiz-Bolivar Z, Neuque-Rico MC, Poutou-Piñales RA, Carrascal-Camacho AK, Mattar S. Antimicrobial susceptibility of Listeria monocytogenes food isolates from different cities in Colombia. Foodborne Pathog Dis 2011; 8:913-9. [PMID: 21492027 DOI: 10.1089/fpd.2010.0813] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
One hundred eight Listeria monocytogenes food isolates from four cities in Colombia and previously confirmed by multiplex polymerase chain reaction were characterized for antimicrobial susceptibility. Isolates were evaluated against 17 antimicrobials contained in the MICroSTREP plus(®)3 panel (MicroScan system). Susceptibility found for ampicillin, amoxicillin/clavulanic acid, and chloramphenicol was 100%, whereas it was 98% for other antimicrobials such as trimethoprim/sulfamethoxazole, 97% for azithromycin, 92% for vancomycin, 90% for erythromycin, 86% for tetracycline, 84% for penicillin, 70% for ciprofloxacin, 57% for rifampin, 56% for meropenem, and 32% for clindamycin. Natural resistance to cephalosporins was confirmed in all cases, and 16% of isolates were nonsusceptible to penicillin. Using Staphylococcus spp. or Enterococcus spp. breakpoints, 48% of isolates displayed multidrug resistances, and the major resistance phenotypes were against rifampin, clindamycin, ciprofloxacin, azithromycin, and erythromycin. Colombian food isolates displayed high resistance to clindamycin, meropenem, rifampin, and ciprofloxacin (30%-65%), and the primary drugs of choice against listeriosis remain effective for most of isolates (84%).
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Affiliation(s)
- Zulema Ruiz-Bolivar
- Laboratorio de Microbiología de Alimentos, Grupo de Biotecnología Ambiental e Industrial, Departamento de Microbiología, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogotá, Colombia
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Sebastián Castillo J, Lucía Leal A, Arturo Álvarez C, Alberto Cortés J, Elena Henríquez D, Buitrago G, Sánchez R, Isabel Barrero L. Bacteriemia por Staphylococcus aureus resistente a la meticilina en la unidad de cuidados intensivos: revisión de los estudios de pronóstico. INFECTIO 2011. [DOI: 10.1016/s0123-9392(11)70073-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Petrosillo N, Capone A, Di Bella S, Taglietti F. Management of antibiotic resistance in the intensive care unit setting. Expert Rev Anti Infect Ther 2010; 8:289-302. [PMID: 20192683 DOI: 10.1586/eri.10.7] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/03/2023]
Abstract
Over the past few decades, an alarming increase of infections caused by antibiotic-resistant pathogens, including methicillin-resistant Staphylococcus aureus, vancomycin-resistant Enterococcus species, carbapenem-resistant Pseudomonas aeruginosa, extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella spp., and multidrug-resistant Acinetobacter spp., has been observed, particularly in intensive care units. For clinicians, the rising resistance rate observed in nosocomial pathogens, when coupled with the lack of effective antimicrobials, represents the real challenge in the therapeutic management of critically ill patients. The contribution of clinicians in minimizing the increasing trend of resistance is represented by reduction of the patients' exposure to antibiotics, which reduces the resistance-selecting pressure, and by avoiding unnecessary antibiotic treatments. Recent issues on strategies to minimize resistance development and to appropriately manage critically ill patients with infections caused by multidrug-resistant organisms in the intensive care unit setting are discussed in this article.
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Affiliation(s)
- Nicola Petrosillo
- 2nd Infectious Diseases Division, National Institute for Infectious Diseases L. Spallanzani, Via Portuense, 292-00149 Rome, Italy.
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Villegas MV, Kattan JN, Correa A, Lolans K, Guzman AM, Woodford N, Livermore D, Quinn JP. Dissemination of Acinetobacter baumannii clones with OXA-23 Carbapenemase in Colombian hospitals. Antimicrob Agents Chemother 2007; 51:2001-4. [PMID: 17403994 PMCID: PMC1891364 DOI: 10.1128/aac.00226-07] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2007] [Revised: 03/07/2007] [Accepted: 03/23/2007] [Indexed: 02/06/2023] Open
Abstract
During 2005, 66 carbapenem-resistant isolates of Acinetobacter baumannii were collected from seven tertiary-care hospitals participating in a nationwide surveillance network in Colombia. The isolates were multidrug resistant and produced the carbapenemases OXA-23 and OXA-51. Forty-five belonged to four clones while 21 were unique pulsotypes. One clone was present in two hospitals within one city, while another had spread between two hospitals in different cities. Blood, secretions, and abdominal fluids were the most frequent sites of isolation. This is the first description of widespread dissemination of OXA-23 in South America.
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