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Gastineau R, Lemieux C, Turmel M, Otis C, Boyle B, Coulis M, Gouraud C, Boag B, Murchie AK, Winsor L, Justine JL. The invasive land flatworm Arthurdendyus triangulatus has repeated sequences in the mitogenome, extra-long cox2 gene and paralogous nuclear rRNA clusters. Sci Rep 2024; 14:7840. [PMID: 38570596 PMCID: PMC10991399 DOI: 10.1038/s41598-024-58600-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 04/01/2024] [Indexed: 04/05/2024] Open
Abstract
Using a combination of short- and long-reads sequencing, we were able to sequence the complete mitochondrial genome of the invasive 'New Zealand flatworm' Arthurdendyus triangulatus (Geoplanidae, Rhynchodeminae, Caenoplanini) and its two complete paralogous nuclear rRNA gene clusters. The mitogenome has a total length of 20,309 bp and contains repetitions that includes two types of tandem-repeats that could not be solved by short-reads sequencing. We also sequenced for the first time the mitogenomes of four species of Caenoplana (Caenoplanini). A maximum likelihood phylogeny associated A. triangulatus with the other Caenoplanini but Parakontikia ventrolineata and Australopacifica atrata were rejected from the Caenoplanini and associated instead with the Rhynchodemini, with Platydemus manokwari. It was found that the mitogenomes of all species of the subfamily Rhynchodeminae share several unusual structural features, including a very long cox2 gene. This is the first time that the complete paralogous rRNA clusters, which differ in length, sequence and seemingly number of copies, were obtained for a Geoplanidae.
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Affiliation(s)
- Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland.
| | - Claude Lemieux
- Département de Biochimie, de Microbiologie et de Bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada
| | - Monique Turmel
- Département de Biochimie, de Microbiologie et de Bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada
| | - Christian Otis
- Plateforme d'Analyse Génomique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada
| | - Brian Boyle
- Plateforme d'Analyse Génomique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada
| | - Mathieu Coulis
- CIRAD, UPR GECO, 97285, Le Lamentin, Martinique, France
- GECO, CIRAD, University Montpellier, Montpellier, France
| | - Clément Gouraud
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, CEDEX, 35042, Rennes, France
| | - Brian Boag
- The James Hutton Institute, Invergowrie, DD2 5DA, Scotland
| | - Archie K Murchie
- Sustainable Agri-Food Sciences Division, Agri-Food and Biosciences Institute, Belfast, BT9 5PX, Northern Ireland
| | - Leigh Winsor
- College of Science and Engineering, James Cook University of North Queensland, Townsville, QLD, Australia
| | - Jean-Lou Justine
- ISYEB, Institut de Systématique, Évolution, Biodiversité (UMR7205 CNRS, EPHE, MNHN, UPMC, Université des Antilles), Muséum National d'Histoire Naturelle, CP 51, 55 Rue Buffon, 75231, Paris Cedex 05, France
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Laznyi E, Boll PK, Pll-Gergely B, Simon J, Szeder KH, Turci G, Katona G. First records of alien land planarians (Platyhelminthes: Geoplanidae) in Hungary. Zootaxa 2024; 5403:592-596. [PMID: 38480414 DOI: 10.11646/zootaxa.5403.5.6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Indexed: 03/19/2024]
Affiliation(s)
- Eszter Laznyi
- Soil Zoological Collection Group; Department of Zoology; Hungarian Natural History Museum; Baross u. 13; H-1088 Budapest; Hungary.
| | | | - Barna Pll-Gergely
- Plant Protection Institute; HUN-REN Centre for Agricultural Research; Herman Ott t 15; Budapest; H-1022; Hungary.
| | - Janka Simon
- National Laboratory for Health Security; Plant Protection Institute; HUN-REN Centre for Agricultural Research; Herman Ott t 15; Budapest; H-1022; Hungary.
| | | | - Gnes Turci
- Plant Protection Institute; HUN-REN Centre for Agricultural Research; Herman Ott t 15; Budapest; H-1022; Hungary.
| | - Gergely Katona
- Lepidoptera Collection; Department of Zoology; Hungarian Natural History Museum; Baross u. 13; H-1088 Budapest; Hungary.
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Sol E, Sluys R, Riutort M, Kawakatsu M. Molecular phylogenetics facilitates the first historical biogeographic analysis of the hammerhead worms (Platyhelminthes: Tricladida: Bipaliinae), with the description of twelve new species and two new genera. Zootaxa 2023; 5335:1-77. [PMID: 38221113 DOI: 10.11646/zootaxa.5335.1.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Indexed: 01/16/2024]
Abstract
The hammerhead worms constitute a land planarian subfamily (Platyhelminthes: Tricladida: Bipaliinae) that is popular among natural historians as well as citizen scientists due to their characteristic semi-lunar-shaped head, the striking colours of many species, and the worldwide presence of introduced species, which has raised much concern about their putative impact on the receiving ecosystems. Despite such current awareness, the majority of Bipaliinae species was described before the second half of the 20th century. Over the past few decades, description of new species has been rather scarce. In the present paper, we describe twelve new species and two new genera from Madagascar, Borneo, and Japan, mainly using specimens that form part of the collections of Naturalis Biodiversity Center, Leiden. Species identification has been based on morphology, inner anatomy, and, when available, molecular information. Our molecular phylogenetic tree suggests that either Malagasy or Bornean representatives form the sister-group to the rest of Bipaliinae. The phylogeny suggests also that the Bipaliinae comprises several new and, as yet, undescribed genera. Although the geographical origin of the subfamily is uncertain and may involve either Madagascar or the Bornean region, a molecular time-calibration of the phylogenetic tree indicated that the origin of the Bipaliinae may date back to about 253 Mya, placing its origin near the Permian-Triassic transition and, thus, on Pangea.
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Affiliation(s)
- Eduard Sol
- Departament de Gentica; Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio); Universitat de Barcelona; Barcelona; Catalonia; Spain; Present address: Institut de Biologia Evolutiva; CSIC; Universitat Pompeu Fabra; Barcelona; Catalonia; Spain.
| | - Ronald Sluys
- Naturalis Biodiversity Center; P.O. Box 9517; 2300 RA Leiden; The Netherlands.
| | - Marta Riutort
- Departament de Gentica; Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio); Universitat de Barcelona; Barcelona; Catalonia; Spain.
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Mori E, Touloupakis E, Viviano A, Mazza G. Opening a gate to shade some light: alien land planarians in the Eastern Mediterranean and Northern Africa. Zootaxa 2023; 5319:295-300. [PMID: 37518229 DOI: 10.11646/zootaxa.5319.2.12] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Indexed: 08/01/2023]
Affiliation(s)
- Emiliano Mori
- National Research Council; Istituto di Ricerca sugli Ecosistemi Terrestri (CNR-IRET); Via Madonna del Piano 10; 50019 Sesto Fiorentino; Florence; Italy; National Biodiversity Future Center; 90133; Palermo; Italy.
| | - Eleftherios Touloupakis
- National Research Council; Istituto di Ricerca sugli Ecosistemi Terrestri (CNR-IRET); Via Madonna del Piano 10; 50019 Sesto Fiorentino; Florence; Italy.
| | - Andrea Viviano
- National Research Council; Istituto di Ricerca sugli Ecosistemi Terrestri (CNR-IRET); Via Madonna del Piano 10; 50019 Sesto Fiorentino; Florence; Italy.
| | - Giuseppe Mazza
- National Biodiversity Future Center; 90133; Palermo; Italy; CREA Research Centre for Plant Protection and Certification (CREA - DC); Via Di Lanciola 12/a; 50125; Cascine del Riccio (Firenze); Italia.
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Luna MDE, Boll PK. An annotated checklist of terrestrial flatworms (Platyhelminthes: Tricladida: Geoplanidae) from Mexico, with new records of invasive species from a citizen science platform and a new nomen dubium. Zootaxa 2023; 5297:518-532. [PMID: 37518781 DOI: 10.11646/zootaxa.5297.4.3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Indexed: 08/01/2023]
Abstract
A checklist of species of terrestrial flatworms (Platyhelminthes: Tricladida: Geoplanidae) recorded for Mexico is compiled, listing 11 species. Five are directly referenced in the literature: Bipalium kewense Moseley, 1878, Bipalium vagum Jones & Sterrer, 2005, Diporodemus yucatani Hyman, 1938, Geoplana multipunctata Fuhrmann, 1914, and Pseudogeoplana nigrofusca (Darwin, 1844); and one species had been indirectly mentioned for the country: Parakontikia ventrolineata (Dendy, 1892), which was described from material intercepted in the USA in a shipment of ornamental plants from Mexico. Mexican records from the citizen science platform iNaturalist were reviewed, revealing the presence of five widely distributed invasive species: Caenoplana coerulea Moseley, 1877, recorded in Ciudad de Mexico; Endeavouria septemlineata (Hyman, 1939), recorded in Ciudad de Mexico, Estado de Mexico, Hidalgo, Jalisco, Morelos, and Oaxaca; Dolichoplana carvalhoi Corrêa, 1947, recorded in Jalisco; Dolichoplana striata Moseley, 1877, recorded in Morelos, Nuevo Leon, Quintana Roo, Tamaulipas, and Veracruz; and Rhynchodemus sylvaticus (Leidy, 1851), recorded in Jalisco. The presence of Parakontikia ventrolineata is confirmed for the country, being recorded in Ciudad de Mexico, Estado de Mexico, Hidalgo, Jalisco, Michoacan, Puebla, Queretaro, and Veracruz. The original description of Pseudogeoplana nigrofusca was revisited and compared to subsequent descriptions and keys, noting that the specimens are not conspecific and that the original description is too vague to accurately identify the species, therefore, this taxon is hereby relegated as a nomen dubium. A key for the higher taxa (subfamilies and tribes) of the North American terrestrial flatworms is proposed.
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Affiliation(s)
- Manuel DE Luna
- Universidad Autonoma de Nuevo Leon; Ciudad Universitaria; P.C. 66451; San Nicolas de los Garza; Nuevo Leoon; Mexico.
| | - Piter Kehoma Boll
- Universidade do Vale do Rio dos Sinos; Avenida Unisinos; 950; 93022-750; São Leopoldo; RS; Brazil.
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Soo OYM, Gastineau R, Verdon G, Winsor L, Justine JL. Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes, Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome. Zootaxa 2023; 5277:585-599. [PMID: 37518300 DOI: 10.11646/zootaxa.5277.3.11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Indexed: 08/01/2023]
Abstract
We present here the first observation of Bipalium admarginatum de Beauchamp, 1933 since its original description 90 years ago. Three specimens were found on Perhentian Kecil Island, off Terengganu State, Malaysia and photographed in the field, and two were collected. This report thus includes the first colour photographs published for this species, from a locality close to the type-locality, Tioman Island (which is ca. 200 km south of the locality in this study, on the east coast of Peninsula Malaysia). We describe the external morphology and colour pattern of the species, which correspond well to the original description, itself based only on two preserved specimens. We performed an in-depth molecular characterisation of the species, including its complete mitochondrial genome, the 18S sequence and elongation 1-alpha (EF1-α) sequence. In addition, EF1-α sequences were also retrieved for 5 additional geoplanid species. No tRNA-Thr could be detected in the mitogenome of B. admarginatum, a lack already reported in several species of geoplanids, but we found a 13 bp sequence that contains the anticodon loop and seems to be conserved among geoplanids and might thus possibly represent a non-canonical undetected tRNA. We discuss the difficulties encountered in trying to reconstruct the cluster of nuclear ribosomal genes, a problem already mentioned for other Triclads. Three phylogenies, based respectively on all mitochondrial proteins, 18S, and EF1-α, were computed; the position of B. admarginatum within the Bipaliinae was confirmed in each tree, as sister-group to various bipaliine species according to the sequences available for each tree. In the mitochondrial proteins tree, which had high support, B. admarginatum was sister to Bipalium kewense and Diversibipalium multilineatum.
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Affiliation(s)
| | - Romain Gastineau
- Institute of Marine and Environmental Sciences; University of Szczecin; Szczecin; Poland.
| | | | - Leigh Winsor
- James Cook University; Townsville; Queensland; Australia..
| | - Jean-Lou Justine
- ISYEB; Institut de Systématique; Évolution; Biodiversité (UMR7205 CNRS; EPHE; MNHN; UPMC; Université des Antilles); Muséum National d'Histoire Naturelle; CP 51; 55 rue Buffon; 75231 Paris Cedex 05; France.
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The Genetic Diversity and the Divergence Time in Extant Primitive Mayfly, Siphluriscus chinensis Ulmer, 1920 Using the Mitochondrial Genome. Genes (Basel) 2022; 13:genes13101780. [PMID: 36292664 PMCID: PMC9601863 DOI: 10.3390/genes13101780] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 09/25/2022] [Accepted: 09/28/2022] [Indexed: 11/04/2022] Open
Abstract
In this study, the mitochondrial (mt) genomes of Siphluriscus chinensis (Ephemeroptera: Siphluriscidae) were evaluated in specimens collected from two sites in China: Niutou Mountain, Zhejiang Province (S. chinensis NTS) and Leigong Mountain, Guizhou Province (S. chinensis LGS) and were successfully sequenced. The lengths of the mt genomes of S. chinensis NTS and S. chinensis LGS were 15,904 bp (ON729390) and 15,212 bp (ON729391), respectively. However, an in-depth comparison of the two mt genomes showed significant differences between the specimens collected from the two sites. A detailed analysis of the genetic distance between S. chinensis NTS and S. chinensis LGS was undertaken to further achieve an accurate delimitation of S. chinensis. The genetic distance between S. chinensis NTS and the other three species within Siphluriscidae was a high value, above 12.2%. The two mt genomes were used to reconstruct phylogenetic relationships and estimate divergence time. The results demonstrated robust differences between S. chinensis NTS and S. chinensis LGS, which revealed that a kind of cryptic species existed. Maximum likelihood (ML) and Bayesian inference (BI) analyses produced well-supported phylogenetic trees that showed evolutionary relationships between Siphluriscidae (((S. chinensis HQ875717 + S. chinensis MF352165) + S. chinensis LGS) + S. chinensis NTS). The most recent common ancestor (MRCA) of four species within Siphluriscidae began to diversify during the Neogene [11.80 million years ago (Mya); 95% highest posterior densities (HPD) = 6.17–19.28 Mya], and S. chinensis NTS was first to diverge from the branches of S. chinensis LGS. In short, based on mitochondrial genomes, our results showed that the specimens collected from Leigong Mountain, Guizhou Province (S. chinensis LGS) belonged to S. chinensis, and the specimens collected from Niutou Mountain, Zhejiang Province (S. chinensis NTS) were a cryptic species of S. chinensis.
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Gastineau R, Winsor L, Justine JL. The complete mitogenome of the potentially invasive flatworm Australopacificaatrata (Platyhelminthes, Geoplanidae) displays unusual features common to other Rhynchodeminae. Zookeys 2022; 1110:121-133. [PMID: 36761455 PMCID: PMC9848750 DOI: 10.3897/zookeys.1110.83228] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 05/24/2022] [Indexed: 11/12/2022] Open
Abstract
We sequenced the complete mitochondrial genome of the flatworm Australopacificaatrata. The species, originally described from New South Wales, Australia, has been found in various locations in the British Isles, New Zealand and in the United States of America; it is thus potentially invasive. The genome is 16513 bp long, encodes for 12 protein coding genes, two ribosomal RNA genes and 20 tRNA genes, and is completely colinear with the other two available Rhynchodeminae. In addition, it shares with them some unusual characters discriminating them from members of the other subfamilies of Geoplanidae, the most noticeable being the extra length of its cox2 gene. The data allow a reliable multigene phylogeny to be derived, and also provide a means of accurate biomonitoring of possible invasiveness by A.atrata.
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Affiliation(s)
- Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, PolandUniversity of SzczecinSzczecinPoland
| | - Leigh Winsor
- College of Science and Engineering, James Cook University, Townsville, Queensland, AustraliaJames Cook UniversityCondonAustralia
| | - Jean-Lou Justine
- ISYEB, Institut de Systématique, Évolution, Biodiversité (UMR7205 CNRS, EPHE, MNHN, UPMC, Université des Antilles), Muséum National d’Histoire Naturelle, CP 51, 55 rue Buffon, 75231 Paris Cedex 05, FranceUniversité des AntillesParisFrance
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Fourcade Y, Winsor L, Justine J. Hammerhead worms everywhere? Modelling the invasion of bipaliin flatworms in a changing climate. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13489] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Affiliation(s)
- Yoan Fourcade
- Univ Paris Est Creteil Sorbonne Université CNRS IRD INRAE Institut d’écologie et des sciences de l'environnement IEES Créteil France
| | - Leigh Winsor
- College of Science and Engineering James Cook University Townsville Queensland Australia
| | - Jean‐Lou Justine
- ISYEB Institut de Systématique Évolution Biodiversité UMR7205 MNHN CNRS EPHE UPMC Université des Antilles Muséum National d’Histoire Naturelle Paris France
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