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Baran A, Ibrahim A, Nakano Y, Aoshima H, Ozeki T, Sato-Baran I, Ordinario DD. An Exploratory Genomic and Transcriptomic Analysis Between Choloepus didactylus and Homo sapiens. Genes (Basel) 2025; 16:272. [PMID: 40149424 PMCID: PMC11942560 DOI: 10.3390/genes16030272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Revised: 02/20/2025] [Accepted: 02/22/2025] [Indexed: 03/29/2025] Open
Abstract
Background/Objectives: Sloths, a group of xenarthran mammals currently comprising six recognized distinct species, have been the focus of much physiological animal research due to their extremely slow metabolisms, deliberate movements, and their status as a species relatively unchanged for over 26 million years. However, despite all the effort aimed at understanding these unique characteristics, the sloth genome remains largely unexplored. Due to the link between genetics and observed traits, such an investigation could potentially lead to insights regarding the genetic basis of unique sloth behaviors and characteristics, such as slow movement, low metabolism, and longevity. Methods: In this exploratory investigation, we performed whole genomic and transcriptomic analysis of a female Choloepus didactylus (Linnaeus's Two-Toed Sloth). Through whole genome sequencing (WGS), the genetic overlap between female two-toed sloths and female humans was estimated in line with evolutionary biology. Results: Transcriptome analysis of peripheral blood mononuclear cells (PBMCs) showed significant differences between gene expression levels in two-toed sloths and humans related to metabolism, body temperature control, cell cycle regulation, telomere maintenance, circadian rhythm regulation, and cancer prevention. Conclusions: The discovered differences imply a relationship to the low metabolisms, slow movements, and longevity displayed by sloths. Future exploratory research will include additional testing to determine if these findings are universal among all recognized sloth species, as well as to address the relationship between specific gene and protein functions and observed traits.
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Affiliation(s)
| | - Antony Ibrahim
- Donald Bren School of Information and Computer Sciences, University of California, Irvine, Irvine, CA 92697, USA;
| | - Yuka Nakano
- Genesis Institute of Genetic Research, Genesis Healthcare Co., Yebisu Garden Place Tower 26F, 4-20-3 Ebisu, Shibuya-ku, Tokyo 150-0013, Japan; (Y.N.); (H.A.); (T.O.); (I.S.-B.)
| | - Hideyuki Aoshima
- Genesis Institute of Genetic Research, Genesis Healthcare Co., Yebisu Garden Place Tower 26F, 4-20-3 Ebisu, Shibuya-ku, Tokyo 150-0013, Japan; (Y.N.); (H.A.); (T.O.); (I.S.-B.)
| | - Takeshi Ozeki
- Genesis Institute of Genetic Research, Genesis Healthcare Co., Yebisu Garden Place Tower 26F, 4-20-3 Ebisu, Shibuya-ku, Tokyo 150-0013, Japan; (Y.N.); (H.A.); (T.O.); (I.S.-B.)
| | - Iri Sato-Baran
- Genesis Institute of Genetic Research, Genesis Healthcare Co., Yebisu Garden Place Tower 26F, 4-20-3 Ebisu, Shibuya-ku, Tokyo 150-0013, Japan; (Y.N.); (H.A.); (T.O.); (I.S.-B.)
| | - David D. Ordinario
- Genesis Institute of Genetic Research, Genesis Healthcare Co., Yebisu Garden Place Tower 26F, 4-20-3 Ebisu, Shibuya-ku, Tokyo 150-0013, Japan; (Y.N.); (H.A.); (T.O.); (I.S.-B.)
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2
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Chang J, Zhang J, Chu L, Liu A, Hou X, Zhu X, Huang X, Xing Q, Hu J, Bao Z. AMPK-mediated regulation of cardiac energy metabolism: Implications for thermotolerance in Argopecten irradians irradians. Gene 2025; 933:148922. [PMID: 39244169 DOI: 10.1016/j.gene.2024.148922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 08/24/2024] [Accepted: 09/03/2024] [Indexed: 09/09/2024]
Abstract
AMPK is a key regulator of metabolism in eukaryotes across various pathways related to energy regulation. Although extensive investigations of AMPK have been conducted in mammals and some model organisms, research on AMPK in scallops is comparatively limited. In this study, three AMPK family genes (AiAMPKα, AiAMPKβ and AiAMPKγ) in scallop Argopecten irradians irradians were identified through genome scanning. Structure prediction and phylogenetic analyses of AiAMPKs were performed to determine their structural features and evolutionary relationships. Spatiotemporal expression patterns of AiAMPKs at different developmental stages and in healthy adult tissues were analyzed to elucidate the function of AiAMPKs in bay scallops' growth and development. The spatiotemporally specific expression of AiAMPKs implied their important roles in growth and development of bay scallops. Heat stress experiment was performed to determine the regulations of AiAMPKs in four kinds of thermosensitive tissues. Expression profiles revealed distinct molecular mechanisms of AiAMPKs in different tissues in response to heat stress: significant down-regulations in mobile hemocytes, but dominant up-regulations occurring in stationary gills, mantles and hearts. Functional verification including knock-down of AiAMPKα and inhibition of AiAMPK was separately conducted in the thermotolerant tissue heart at the post-transcription and translation levels. The thermotolerant index Arrhenius break temperature (ABT) showed a significant decrease and the rate-amplitude product (RAP) peaked earlier in the individuals after RNAi targeting AiAMPKα, displaying an earlier transition to anaerobic metabolism under heat stress, indicating an impairing ability of aerobic metabolism. After AiAMPK inhibition, widespread down-regulations of genes in key energy metabolism pathways, RNA polymerase II-mediated transcription, and aminoacyl-tRNA synthesis pathways were obviously observed, revealing the post-translational inhibition of AiAMPK hindered cardiac energy metabolism, basal transcription and translation. Overall, our findings provide evidences for exploring the molecular mechanisms of energy regulation in thermotolerant traits in bay scallops under ongoing global warming.
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Affiliation(s)
- Jiaxi Chang
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China
| | - Junhao Zhang
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China
| | - Longfei Chu
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China
| | - Ancheng Liu
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China
| | - Xiujiang Hou
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China
| | - Xinghai Zhu
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China
| | - Xiaoting Huang
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
| | - Qiang Xing
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.
| | - Jingjie Hu
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China; Laboratory of Tropical Marine Germplasm Resources and Breeding Engineering, Sanya Oceanographic Institution of the Ocean University of China (SOI-OUC), Sanya 572000, China
| | - Zhenmin Bao
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao 266003, China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
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3
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Deak MD, Porter WP, Mathewson PD, Lovelace DM, Flores RJ, Tripati AK, Eagle RA, Schwartz DM, Butcher MT. Metabolic skinflint or spendthrift? Insights into ground sloth integument and thermophysiology revealed by biophysical modeling and clumped isotope paleothermometry. J MAMM EVOL 2025; 32:1. [PMID: 39822851 PMCID: PMC11732909 DOI: 10.1007/s10914-024-09743-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/17/2024] [Indexed: 01/19/2025]
Abstract
Remains of megatheres have been known since the 18th -century and were among the first megafaunal vertebrates to be studied. While several examples of preserved integument show a thick coverage of fur for smaller ground sloths living in cold climates such as Mylodon and Nothrotheriops, comparatively very little is known about megathere skin. Assuming a typical placental mammal metabolism, it was previously hypothesized that megatheres would have had little-to-no fur as they achieved giant body sizes. Here the "hairless model of integument" is tested using geochemical analyses to estimate body temperature to generate novel models of ground sloth metabolism, fur coverage, and paleoclimate with Niche Mapper software. The simulations assuming metabolic activity akin to those of modern xenarthrans suggest that sparse fur coverage would have resulted in cold stress across most latitudinal ranges inhabited by extinct ground sloths. Specifically, Eremotherium predominantly required dense 10 mm fur with implications for seasonal changes of coat depth in northernmost latitudes and sparse fur in the tropics; Megatherium required dense 30 mm fur year-round in its exclusive range of cooler, drier climates; Mylodon and Nothrotheriops required dense 10-50 mm fur to avoid thermal stress, matching the integument remains of both genera, and further implying the use of behavioral thermoregulation. Moreover, clumped isotope paleothermometry data from the preserved teeth of four genera of ground sloth yielded reconstructed body temperatures lower than those previously reported for large terrestrial mammals (23 ± 5-32 ± 3° C). This combination of low metabolisms and thick fur allowed ground sloths to inhabit various environments. Supplementary information The online version contains supplementary material available at 10.1007/s10914-024-09743-2.
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Affiliation(s)
- Michael D. Deak
- Department of Chemical and Biological Sciences, Youngstown State University, Youngstown, OH USA
| | - Warren P. Porter
- Department of Integrative Biology, University of Wisconsin - Madison, Madison, WI USA
| | - Paul D. Mathewson
- Department of Integrative Biology, University of Wisconsin - Madison, Madison, WI USA
| | - David M. Lovelace
- Department of Geosciences, University of Wisconsin - Madison, Madison, WI USA
| | - Randon J. Flores
- Department of Earth and Space Sciences, University of California - Los Angeles, Los Angeles, CA USA
| | - Aradhna K. Tripati
- Department of Earth and Space Sciences, University of California - Los Angeles, Los Angeles, CA USA
- Department of Atmospheric and Oceanic Sciences, Institute of the Environment and Sustainability, Center for Diverse Leadership in Science, University of California - Los Angeles, Los Angeles, CA USA
| | - Robert A. Eagle
- Department of Earth and Space Sciences, University of California - Los Angeles, Los Angeles, CA USA
| | | | - Michael T. Butcher
- Department of Chemical and Biological Sciences, Youngstown State University, Youngstown, OH USA
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4
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Cliffe RN, Ewart HE, Scantlebury DM, Kennedy S, Avey-Arroyo J, Mindich D, Wilson RP. Sloth metabolism may make survival untenable under climate change scenarios. PeerJ 2024; 12:e18168. [PMID: 39351373 PMCID: PMC11441404 DOI: 10.7717/peerj.18168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 09/03/2024] [Indexed: 10/04/2024] Open
Abstract
Although climate change is predicted to have a substantial effect on the energetic requirements of organisms, the longer-term implications are often unclear. Sloths are limited by the rate at which they can acquire energy and are unable to regulate core body temperature (Tb) to the extent seen in most mammals. Therefore, the metabolic impacts of climate change on sloths are expected to be profound. Here we use indirect calorimetry to measure the oxygen consumption (VO2) and Tb of highland and lowland two-fingered sloths (Choloepus hoffmanni) when exposed to a range of different ambient temperatures (Ta) (18 °C -34 °C), and additionally record changes in Tb and posture over several days in response to natural fluctuations in Ta. We use the resultant data to predict the impact of future climate change on the metabolic rate and Tb of the different sloth populations. The metabolic responses of sloths originating from the two sites differed at high Ta's, with lowland sloths invoking metabolic depression as temperatures rose above their apparent 'thermally-active zone' (TAZ), whereas highland sloths showed increased RMR. Based on climate change estimates for the year 2100, we predict that high-altitude sloths are likely to experience a substantial increase in metabolic rate which, due to their intrinsic energy processing limitations and restricted geographical plasticity, may make their survival untenable in a warming climate.
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Affiliation(s)
- Rebecca N Cliffe
- The Sloth Conservation Foundation, Hayfield, Derbyshire, United Kingdom
- Swansea Lab for Animal Movement, Biosciences, College of Science, Swansea University, Swansea, Wales, United Kingdom
| | - Heather E Ewart
- The Sloth Conservation Foundation, Hayfield, Derbyshire, United Kingdom
- School of Biological Sciences, The University of Manchester, Manchester, United Kingdom
| | - David M Scantlebury
- School of Biological Sciences, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom
| | - Sarah Kennedy
- The Sloth Conservation Foundation, Hayfield, Derbyshire, United Kingdom
| | | | | | - Rory P Wilson
- Swansea Lab for Animal Movement, Biosciences, College of Science, Swansea University, Swansea, Wales, United Kingdom
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5
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Simmen B, Quintard B, Lefaux B, Tarnaud L, Correa-Pimpao G, Ibanez R, Blanc S, Zahariev A. Thermal and morphometric correlates of the extremely low rate of energy use in a wild frugivorous primate, the Mayotte lemur. Sci Rep 2024; 14:21700. [PMID: 39289438 PMCID: PMC11408505 DOI: 10.1038/s41598-024-72189-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Accepted: 09/04/2024] [Indexed: 09/19/2024] Open
Abstract
Primates spend on average half as much energy as other placental mammals while expressing a wide range of lifestyles. However, little is known about how primates adapt their rate of energy use in the context of natural environmental variations. Using doubly labelled water, behavioral and accelerometric methods, we measured the total energy expenditure (TEE) and body composition of a population of Eulemur fulvus (N = 12) living in an agroforest in Mayotte. We show that the TEE of this medium-sized cathemeral primate is one of the lowest recorded to date in eutherians. Regression models show that individual variation in the rate of energy use is predicted by fat-free mass, body size, thigh thickness and maximum temperature. TEE is positively correlated with increasing temperature, suggesting that thermoregulation is an important component of the energy budget of this frugivorous species. Mass-specific TEE is only 10% lower than that of a closely related species previously studied in a gallery forest, consistent with the assertion that TEE varies within narrow physiological limits. As lemur communities include many species with unique thermoregulatory adaptations, circadian and/or seasonal temperature variations may have constituted a major selective pressure on the evolution of lemur metabolic strategies.
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Affiliation(s)
- B Simmen
- UMR 7206, Eco-Anthropologie, Centre National de la Recherche Scientifique, Muséum National d'Histoire Naturelle, Université de Paris, Brunoy, France.
| | - B Quintard
- Parc Zoologique et Botanique de Mulhouse, 68100, Mulhouse, France
| | - B Lefaux
- Parc Zoologique et Botanique de Mulhouse, 68100, Mulhouse, France
| | - L Tarnaud
- UMR 7206, Eco-Anthropologie, Centre National de la Recherche Scientifique, Muséum National d'Histoire Naturelle, Université de Paris, Brunoy, France
| | - G Correa-Pimpao
- UMR 7206, Eco-Anthropologie, Centre National de la Recherche Scientifique, Muséum National d'Histoire Naturelle, Université de Paris, Brunoy, France
| | - R Ibanez
- UMR 7206, Eco-Anthropologie, Centre National de la Recherche Scientifique, Muséum National d'Histoire Naturelle, Université de Paris, Brunoy, France
| | - S Blanc
- UMR 7178, Institut Pluridisciplinaire Hubert Curien, Centre National de la Recherche Scientifique, Université Louis Pasteur, Strasbourg, France
| | - A Zahariev
- UMR 7178, Institut Pluridisciplinaire Hubert Curien, Centre National de la Recherche Scientifique, Université Louis Pasteur, Strasbourg, France
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6
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Gasparotto VPDO, Canena ADC, Weber-Souza FF, Simas Bernardes FC, Miranda FR. FIRST REPORT OF CHEMICAL IMMOBILIZATION AND PHYSIOLOGICAL PARAMETERS FOR FREE-RANGING MANED SLOTH ( BRADYPUS TORQUATUS), USING A COMBINATION OF KETAMINE AND MEDETOMIDINE. J Zoo Wildl Med 2024; 55:200-206. [PMID: 38453503 DOI: 10.1638/2023-0044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/19/2023] [Indexed: 03/09/2024] Open
Abstract
The maned sloth (Bradypus torquatus) is an endemic and endangered species of two Brazilian states, with much unknown biological information needed to direct conservation actions. Other sloth species have been studied regarding anesthesia; however, there is a lack of anesthesia research for the maned sloth. Anesthetic data were collected from 12 free-range maned sloths that were immobilized for a field examination. Individuals were anesthetized using a combination of ketamine (4.0 mg/kg) and medetomidine (0.03 mg/kg), and antagonized with atipamezole (0.1 mg/kg). Time to induction and recovery were recorded and compared with sex and age classes. After the induction and until antagonist administration, physiological parameters (rectal temperature, heart rate, respiratory rate, and oxygen saturation) were recorded every 10 min during anesthesia and were statistically evaluated over time. Induction was fast (3.21 ± 0.76), but recovery was longer (113.3 ± 18) when compared to other studies. Induction and recovery times were not different across sex or age classes. Rectal temperature, heart rate, and oxygen saturation remained stable throughout the procedure. Respiratory rate significantly decreased over time, from 18.25 ± 7.03 to 13.17 ± 3.66 movements per minute. Our results indicate that the described combination of ketamine and medetomidine is a safe and effective choice for anesthesia of maned sloths.
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Affiliation(s)
- Vinícius Peron de Oliveira Gasparotto
- Institute of Research and Conservation of Anteaters in Brazil- Instituto Tamanduá, Parnaíba, Piauí, Brazil
- Brazilian Institute for Conservation Medicine-Instituto Tríade, Recife, Pernambuco, Brazil
| | - Ariel da Costa Canena
- Universidade Estadual de Santa Cruz, campus Soane Nazaré de Andrade, Ilhéus, Bahia, 45662-900 Brazil
| | | | | | - Flávia Regina Miranda
- Universidade Estadual de Santa Cruz, campus Soane Nazaré de Andrade, Ilhéus, Bahia, 45662-900 Brazil
- Institute of Research and Conservation of Anteaters in Brazil- Instituto Tamanduá, Parnaíba, Piauí, Brazil
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Morgan DM, Spainhower KB, Mossor AM, Avey‐Arroyo JA, Butcher M. Muscle architectural properties indicate a primary role in support for the pelvic limb of three-toed sloths (Bradypus variegatus). J Anat 2023; 243:448-466. [PMID: 37190673 PMCID: PMC10439369 DOI: 10.1111/joa.13884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 04/21/2023] [Accepted: 04/27/2023] [Indexed: 05/17/2023] Open
Abstract
Tree sloths evolved below-branch locomotion making them one of few mammalian taxa beyond primates for which suspension is nearly obligatory. Suspension requires strong limb flexor muscles that provide both propulsion and braking/support, and available locomotor kinetics data indicate that these roles differ between fore- and hindlimb pairs. Muscle structure in the pelvic limb is hypothesized to be a key anatomical correlate of function in braking/support during suspensory walking and propulsion and/or support during vertical climbing. This expectation was tested by quantifying architecture properties in the hindlimb limb musculature of brown-throated three-toed sloths (Bradypus variegatus: N = 7) to distinguish the roles of the flexor/extensor functional muscle groups at each joint. Measurements of muscle moment arm (rm ), mass, belly length, fascicle length, pennation angle, and physiological cross-sectional area (PCSA) were taken from n = 45 muscles. Overall, most muscles studied show properties for contractile excursion and fast joint rotational velocity. However, the flexor musculature is more massive (p = 0.048) and has larger PCSA (p = 0.003) than the extensors, especially at the knee joint and digits where well-developed and strong flexors are capable of applying large joint torque. Moreover, selected hip flexors/extensors and knee flexors have modified long rm that can amplify applied joint torque in muscles with otherwise long, parallel fascicles, and one muscle (m. iliopsoas) was capable of moderately high power in B. variegatus. The architectural properties observed in the hip flexors and extensors match well with roles in suspensory braking and vertical propulsion, respectively, whereas strong knee flexors and digital flexors appear to be the main muscles providing suspensory support in the pelvic limb. With aid in support by the forelimbs and the use of adaptive slow locomotion and slow muscle fiber recruitment patterns, structure-function in the tensile limb systems of sloths appears to collectively represent an additional mechanism for energy conservation.
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Affiliation(s)
- D. M. Morgan
- Department of Chemical and Biological SciencesYoungstown State UniversityOhioYoungstownUSA
| | - K. B. Spainhower
- Department of Chemical and Biological SciencesYoungstown State UniversityOhioYoungstownUSA
| | - A. M. Mossor
- Department of Anatomy and NeurobiologyNortheast Ohio Medical UniversityRootstownOhioUSA
- School of Biomedical SciencesKent State UniversityKentOhioUSA
| | | | - M. T. Butcher
- Department of Chemical and Biological SciencesYoungstown State UniversityOhioYoungstownUSA
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Martinez Q, Okrouhlík J, Šumbera R, Wright M, Araújo R, Braude S, Hildebrandt TB, Holtze S, Ruf I, Fabre PH. Mammalian maxilloturbinal evolution does not reflect thermal biology. Nat Commun 2023; 14:4425. [PMID: 37479710 PMCID: PMC10361988 DOI: 10.1038/s41467-023-39994-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 07/07/2023] [Indexed: 07/23/2023] Open
Abstract
The evolution of endothermy in vertebrates is a major research topic in recent decades that has been tackled by a myriad of research disciplines including paleontology, anatomy, physiology, evolutionary and developmental biology. The ability of most mammals to maintain a relatively constant and high body temperature is considered a key adaptation, enabling them to successfully colonize new habitats and harsh environments. It has been proposed that in mammals the anterior nasal cavity, which houses the maxilloturbinal, plays a pivotal role in body temperature maintenance, via a bony system supporting an epithelium involved in heat and moisture conservation. The presence and the relative size of the maxilloturbinal has been proposed to reflect the endothermic conditions and basal metabolic rate in extinct vertebrates. We show that there is no evidence to relate the origin of endothermy and the development of some turbinal bones by using a comprehensive dataset of µCT-derived maxilloturbinals spanning most mammalian orders. Indeed, we demonstrate that neither corrected basal metabolic rate nor body temperature significantly correlate with the relative surface area of the maxilloturbinal. Instead, we identify important variations in the relative surface area, morpho-anatomy, and complexity of the maxilloturbinal across the mammalian phylogeny and species ecology.
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Affiliation(s)
- Quentin Martinez
- Institut des Sciences de l'Évolution (ISEM, UMR 5554 CNRS-IRD-UM), Université de Montpellier, Place E. Bataillon - CC 064 - 34095, Montpellier Cedex 5, Montpellier, France.
- Staatliches Museum für Naturkunde Stuttgart, DE-70191, Stuttgart, Germany.
| | - Jan Okrouhlík
- Department of Zoology, Faculty of Science, University of South Bohemia, 37005, České Budějovice, Czech Republic
| | - Radim Šumbera
- Department of Zoology, Faculty of Science, University of South Bohemia, 37005, České Budějovice, Czech Republic
| | - Mark Wright
- Institut des Sciences de l'Évolution (ISEM, UMR 5554 CNRS-IRD-UM), Université de Montpellier, Place E. Bataillon - CC 064 - 34095, Montpellier Cedex 5, Montpellier, France
- Department of Organismic and Evolutionary Biology & Museum of Comparative Zoology, Harvard University, Cambridge, MA, 02138, USA
| | - Ricardo Araújo
- Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
| | - Stan Braude
- Biology Department, Washington University, St. Louis, MO, 63130, USA
| | - Thomas B Hildebrandt
- Department of Reproduction Management, Leibniz-Instiute for Zoo and Wildlife Research, 10315, Berlin, Germany
- Faculty of Veterinary Medicine, Freie Universität, Berlin, Germany
| | - Susanne Holtze
- Department of Reproduction Management, Leibniz-Instiute for Zoo and Wildlife Research, 10315, Berlin, Germany
| | - Irina Ruf
- Abteilung Messelforschung und Mammalogie, Senckenberg Forschungsinstitut und Naturmuseum Frankfurt, 60325, Frankfurt am Main, Germany
| | - Pierre-Henri Fabre
- Institut des Sciences de l'Évolution (ISEM, UMR 5554 CNRS-IRD-UM), Université de Montpellier, Place E. Bataillon - CC 064 - 34095, Montpellier Cedex 5, Montpellier, France
- Mammal Section, Department of Life Sciences, The Natural History Museum, SW7 5DB, London, United Kingdom
- Institut Universitaire de France (IUF), Paris, France
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9
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Cliffe RN, Haupt RJ, Kennedy S, Felton C, Williams HJ, Avey-Arroyo J, Wilson R. The behaviour and activity budgets of two sympatric sloths; Bradypus variegatus and Choloepus hoffmanni. PeerJ 2023; 11:e15430. [PMID: 37273542 PMCID: PMC10234273 DOI: 10.7717/peerj.15430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 04/26/2023] [Indexed: 06/06/2023] Open
Abstract
It is usually beneficial for species to restrict activity to a particular phase of the 24-hour cycle as this enables the development of morphological and behavioural adaptations to enhance survival under specific biotic and abiotic conditions. Sloth activity patterns are thought to be strongly related to the environmental conditions due to the metabolic consequences of having a low and highly variable core body temperature. Understanding the drivers of sloth activity and their ability to withstand environmental fluctuations is of growing importance for the development of effective conservation measures, particularly when we consider the vulnerability of tropical ecosystems to climate change and the escalating impacts of anthropogenic activities in South and Central America. Unfortunately, the cryptic nature of sloths makes long term observational research difficult and so there is very little existing literature examining the behavioural ecology of wild sloths. Here, we used micro data loggers to continuously record, for the first time, the behaviour of both Bradypus and Choloepus sloths over periods of days to weeks. We investigate how fluctuations in the environmental conditions affect the activity of sloths inhabiting a lowland rainforest on the Caribbean coast of Costa Rica and examined how this might relate to their low power lifestyle. Both Bradypus and Choloepus sloths were found to be cathemeral in their activity, with high levels of between-individual and within-individual variation in the amounts of time spent active, and in the temporal distribution of activity over the 24-hour cycle. Daily temperature did not affect activity, although Bradypus sloths were found to show increased nocturnal activity on colder nights, and on nights following colder days. Our results demonstrate a distinct lack of synchronicity within the same population, and we suggest that this pattern provides sloths with the flexibility to exploit favourable environmental conditions whilst reducing the threat of predation.
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Affiliation(s)
- Rebecca N. Cliffe
- The Sloth Conservation Foundation, Hayfield, Derbyshire, United Kingdom
- Swansea Lab for Animal Movement, Biosciences, College of Science, Swansea University, Swansea, United Kingdom
- The Sloth Sanctuary of Costa Rica, Limon, Costa Rica
| | - Ryan J. Haupt
- Department of Geology and Geophysics, University of Wyoming, Laramie, WY, United States of America
| | - Sarah Kennedy
- The Sloth Conservation Foundation, Hayfield, Derbyshire, United Kingdom
| | - Cerys Felton
- Swansea Lab for Animal Movement, Biosciences, College of Science, Swansea University, Swansea, United Kingdom
| | - Hannah J. Williams
- Swansea Lab for Animal Movement, Biosciences, College of Science, Swansea University, Swansea, United Kingdom
- Migration Department, Max Planck Institute of Animal Behavior, Radolfzell, Germany
| | | | - Rory Wilson
- Swansea Lab for Animal Movement, Biosciences, College of Science, Swansea University, Swansea, United Kingdom
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10
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Young MW, Granatosky MC, Avey‐Arroyo JA, Butcher MT, Dickinson E. Grip it good:
in vivo
grip force across substrate diameters in the brown‐throated three‐toed sloth (
Bradypus variegatus
). J Zool (1987) 2022. [DOI: 10.1111/jzo.13041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- M. W. Young
- Department of Anatomy New York Institute of Technology College of Osteopathic Medicine Old Westbury NY USA
| | - M. C. Granatosky
- Department of Anatomy New York Institute of Technology College of Osteopathic Medicine Old Westbury NY USA
- Center for Biomedical Innovation New York Institute of Technology College of Osteopathic Medicine Old Westbury NY USA
| | | | - M. T. Butcher
- Department of Chemical and Biological Sciences Youngstown State University Youngstown OH USA
| | - E. Dickinson
- Department of Anatomy New York Institute of Technology College of Osteopathic Medicine Old Westbury NY USA
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11
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Butcher MT, Morgan DM, Spainhower KB, Thomas DR, Chadwell BA, Avey‐Arroyo JA, Kennedy SP, Cliffe RN. Myology of the pelvic limb of the brown-throated three-toed sloth (Bradypus variegatus). J Anat 2022; 240:1048-1074. [PMID: 35037260 PMCID: PMC9119613 DOI: 10.1111/joa.13626] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 12/20/2021] [Accepted: 12/30/2021] [Indexed: 12/01/2022] Open
Abstract
Tree sloths rely on their limb flexors for bodyweight support and joint stability during suspensory locomotion and posture. This study aims to describe the myology of three-toed sloths and identify limb muscle traits that indicate modification for suspensorial habit. The pelvic limbs of the brown-throated three-toed sloth (Bradypus variegatus) were dissected, muscle belly mass was recorded, and the structural arrangements of the muscles were documented and compared with the available myological accounts for sloths. Overall, the limb musculature is simplified by containing muscles with generally long and parallel fascicles. A number of specific and informative muscle traits are additionally observed in the pelvic limb of B. variegatus: well-developed hip flexors and hip extensors each displaying several fused bellies; massive knee flexors; two heads of the m. adductor longus and m. gracilis; robust digital flexors and flexor tendons; m. tibialis cranialis muscle complex originating from the tibia and fibula and containing a modified m. extensor digitorum I longus; appreciable muscle mass devoted to ankle flexion and hindfoot supination; only m. extensor digitorum brevis acts to extend the digits. Collectively, the findings for tree sloths emphasize muscle mass and organization for suspensory support namely by the hip flexors, knee flexors, and limb adductors, for which the latter two groups may stabilize suspensory postures by exerting appreciable medially-directed force on the substrate. Specializations in the distal limb are also apparent for sustained purchase of the substrate by forceful digital flexion coupled with strong ankle flexion and supination of the hind feet, which is permitted by the reorganization of several digital extensors. Moreover, the reduction or loss of other digital flexor and ab-adductor muscles marks a dramatic simplification of the intrinsic foot musculature in B. variegatus, the extent to which varies across extant species of two- and three-toed tree sloths and likely is related to substrate preference/use.
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Affiliation(s)
- Michael T. Butcher
- Department of Chemical, Biological and Forensic SciencesYoungstown State UniversityYoungstownOhioUSA
| | - Dakota M. Morgan
- Department of Chemical, Biological and Forensic SciencesYoungstown State UniversityYoungstownOhioUSA
| | - Kyle B. Spainhower
- Department of Chemical, Biological and Forensic SciencesYoungstown State UniversityYoungstownOhioUSA
| | - Dylan R. Thomas
- Department of Chemical, Biological and Forensic SciencesYoungstown State UniversityYoungstownOhioUSA
| | - Brad A. Chadwell
- Department of AnatomyIdaho College of Osteopathic MedicineMeridianIdahoUSA
| | | | - Sarah P. Kennedy
- Sloth Conservation FoundationPuerto Viejo de TalamancaLimonCosta Rica
| | - Rebecca N. Cliffe
- Sloth Conservation FoundationPuerto Viejo de TalamancaLimonCosta Rica
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12
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Castro-Sa MJ, Dias-Silva RH, Barnett AA. Cathemeral activity by brown-throated three-toed sloths (Bradypus variegatus) in central Amazonian flooded igapó forests. CAN J ZOOL 2021. [DOI: 10.1139/cjz-2020-0177] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Both biotic and abiotic factors are important for maintaining the activity cycles of animals and may determine the most advantageous periods for eating, moving, and sleeping. Although the solar day–night cycle is among the most central of abiotic variables, a number of species are active both day and night. Three-toed sloth (genus Bradypus Linnaeus, 1758) populations across the Neotropics show this pattern, with activity occurring at various times within the 24 h cycle. In the current study, we used radio-tracking techniques to investigate the daily temporal patterning of brown-throated three-toed sloth (Bradypus variegatus Schinz, 1825) displacement in Amazonian flooded igapó forest and compared the results with populations studied in other habitats. We concluded that igapó sloths are cathemeral, and discussed that environmental temperature, nutritional needs and the presence of predators may be the main factors influencing their activity pattern.
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Affiliation(s)
- Matheus J. Castro-Sa
- Ecology Post-graduate Program, National Amazon Research Institute, Avenida André Araújo, 2.936 - Petrópolis, Manaus, Amazonas, Brazil
| | - Renann H.P. Dias-Silva
- Zoology Post-graduate Program, Universidade Federal do Amazonas, Avenida Gal. Rodrigo Otávio Jordão Ramos, 3000, Sector South Manaus, Amazonas, Brazil
| | - Adrian A. Barnett
- Amazon Mammals Research Group, National Amazon Research Institute, Avenida André Araújo, 2.936 - Petrópolis, Manaus, Amazonas, Brazil
- Zoology Department, Federal University of Pernambuco, Recife, Pernambuco, Brazil
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13
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Mossor AM, Austin BL, Avey-Arroyo JA, Butcher MT. A Horse of a Different Color?: Tensile Strength and Elasticity of Sloth Flexor Tendons. Integr Org Biol 2021; 2:obaa032. [PMID: 33796818 DOI: 10.1093/iob/obaa032] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Tendons must be able to withstand the tensile forces generated by muscles to provide support while avoiding failure. The properties of tendons in mammal limbs must therefore be appropriate to accommodate a range of locomotor habits and posture. Tendon collagen composition provides resistance to loading that contributes to tissue strength which could, however, be modified to not exclusively confer large strength and stiffness for elastic energy storage/recovery. For example, sloths are nearly obligate suspenders and cannot run, and due to their combined low metabolic rate, body temperature, and rate of digestion, they have an extreme need to conserve energy. It is possible that sloths have a tendon "suspensory apparatus" functionally analogous to that in upright ungulates, thus allowing for largely passive support of their body weight below-branch, while concurrently minimizing muscle contractile energy expenditure. The digital flexor tendons from the fore- and hindlimbs of two-toed (Choloepus hoffmanni) and three-toed (Bradypus variegatus) sloths were loaded in tension until failure to test this hypothesis. Overall, tensile strength and elastic (Young's) modulus of sloth tendons were low, and these material properties were remarkably similar to those of equine suspensory "ligaments." The results also help explain previous findings in sloths showing relatively low levels of muscle activation in the digital flexors during postural suspension and suspensory walking.
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Affiliation(s)
- A M Mossor
- Department of Biological Sciences, Youngstown State University, Youngstown, OH USA
| | - B L Austin
- Department of Biological Sciences, Youngstown State University, Youngstown, OH USA
| | | | - M T Butcher
- Department of Biological Sciences, Youngstown State University, Youngstown, OH USA
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14
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Spainhower KB, Metz AK, Yusuf ARS, Johnson LE, Avey-Arroyo JA, Butcher MT. Coming to grips with life upside down: how myosin fiber type and metabolic properties of sloth hindlimb muscles contribute to suspensory function. J Comp Physiol B 2020; 191:207-224. [PMID: 33211164 DOI: 10.1007/s00360-020-01325-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Revised: 09/15/2020] [Accepted: 10/28/2020] [Indexed: 11/24/2022]
Abstract
Sloths exhibit almost obligatory suspensory locomotion and posture. These behaviors require both strength and fatigue resistance, although we previously found muscle fiber type characteristics in the forelimbs of sloths that belied these initial expectations. Based on locomotor roles of the forelimbs versus hindlimbs in propulsion and braking, respectively, sloth hindlimb musculature should be adapted for force production and energy savings by a near homogeneous expression of slow myosin heavy chain (MHC) fibers. This hypothesis was tested by determining MHC fiber type (%) distribution and energy metabolism in the hindlimbs of three-toed (B. variegatus, N = 5) and two-toed (C. hoffmanni, N = 3) sloths. A primary expression of the slow MHC-1 isoform was found in the hindlimbs of both species. Slow MHC fiber type (%) was significantly greater in the flexors of B. variegatus, whereas expression of fast MHC-2A fibers was significantly greater in the extensors of C. hoffmannni. MHC-1 fibers were largest in cross-sectional area (CSA) and comprised the greatest %CSA in each muscle sampled from both species. Enzyme assays showed elevated activity for anaerobic enzymes (CK and LDH) compared with low-to-moderate activity for aerobic enzymes (3-HAD and CS), and only CK activity was related to body size. These findings emphasize a joint stabilization role by the hindlimbs during suspension, especially in smaller three-toed sloths, and suggest that larger two-toed sloths could have muscles further modified for greater power output and/or prolonged arboreal maneuvering. Moreover, modifications to muscle metabolism rather than MHC expression may be more reflective of functional adaptation in sloth limbs.
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Affiliation(s)
- Kyle B Spainhower
- Department of Biological Sciences, Youngstown State University, 4013 Ward Beecher Science Hall, Youngstown, OH, 44555, USA
| | - Allan K Metz
- Department of Biological Sciences, Youngstown State University, 4013 Ward Beecher Science Hall, Youngstown, OH, 44555, USA
| | - Abdel-Ruhman S Yusuf
- Department of Biological Sciences, Youngstown State University, 4013 Ward Beecher Science Hall, Youngstown, OH, 44555, USA
| | - Lydia E Johnson
- Department of Biological Sciences, Youngstown State University, 4013 Ward Beecher Science Hall, Youngstown, OH, 44555, USA
| | | | - Michael T Butcher
- Department of Biological Sciences, Youngstown State University, 4013 Ward Beecher Science Hall, Youngstown, OH, 44555, USA.
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15
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Cliffe RN, Robinson CV, Whittaker BA, Kennedy SJ, Avey‐Arroyo JA, Consuegra S, Wilson RP. Genetic divergence and evidence of human-mediated translocation of two-fingered sloths (C holoepus hoffmanni) in Costa Rica. Evol Appl 2020; 13:2439-2448. [PMID: 33005232 PMCID: PMC7513709 DOI: 10.1111/eva.13036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 05/21/2020] [Accepted: 05/22/2020] [Indexed: 12/01/2022] Open
Abstract
Sloths are notoriously slow and consequently have limited dispersal ability, which makes them particularly vulnerable to the effects of habitat fragmentation and degradation. Sloths in Costa Rica are considered of conservation concern due to habitat loss, livestock production and increasing urbanization. Reintroductions from rescue centres are commonplace across the country, yet their genetic diversity and population structure are unknown, and there is currently little consideration of the genetic background prior to intervention or releases. We used microsatellite analysis to undertake the first exploratory investigation into sloth population genetics in Costa Rica. Using data from 98 two-fingered sloths (Choloepus hoffmanni) from four different geographic regions, we determined the presence of four potential genetic groups, three of them with minimal population structuring despite the limited dispersal ability and presence of physical barriers. Sloths from the North appear to represent a highly distinct population that we propose may require management as a discrete unit for conservation. We stress the need for additional analyses to better understand the genetic structure and diversity of North andWest regions and suggest that rescue facilities in Costa Rica should consider the genetic background of rehabilitated sloths when planning future reintroductions. Our results also highlight the threat posed by physical isolation due to widespread urbanization and agriculture expansion for a species with a weak dispersal ability.
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Affiliation(s)
- Rebecca N. Cliffe
- Biosciences, College of ScienceSwansea UniversityWalesUK
- The Sloth Sanctuary of Costa RicaLimonCosta Rica
- The Sloth Conservation FoundationHayfieldUK
| | - Chloe V. Robinson
- Biosciences, College of ScienceSwansea UniversityWalesUK
- Present address:
Department of Integrative Biology and Centre for Biodiversity GenomicsUniversity of Guelph50 Stone Road EGuelphONN1G 2W1Canada
| | - Benjamin A. Whittaker
- Biosciences, College of ScienceSwansea UniversityWalesUK
- The Sloth Sanctuary of Costa RicaLimonCosta Rica
- Present address:
Department of Integrative BiologyUniversity of Guelph50 Stone Road EGuelphONN1G 2W1Canada
| | | | | | | | - Rory P. Wilson
- Biosciences, College of ScienceSwansea UniversityWalesUK
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16
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Gorvet MA, Wakeling JM, Morgan DM, Hidalgo Segura D, Avey-Arroyo J, Butcher MT. Keep calm and hang on: EMG activation in the forelimb musculature of three-toed sloths ( Bradypus variegatus). ACTA ACUST UNITED AC 2020; 223:jeb.218370. [PMID: 32527958 DOI: 10.1242/jeb.218370] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 06/02/2020] [Indexed: 11/20/2022]
Abstract
Sloths exhibit below branch locomotion whereby their limbs are loaded in tension to support the body weight. Suspensory behaviors require both strength and fatigue resistance from the limb flexors; however, skeletal muscle mass of sloths is reduced compared with other arboreal mammals. Although suspensory locomotion demands that muscles are active to counteract the pull of gravity, it is possible that sloths minimize muscle activation and/or selectively recruit slow motor units to maintain support, thus indicating neuromuscular specializations to conserve energy. Electromyography (EMG) was evaluated in a sample of three-toed sloths (Bradypus variegatus; N=6) to test this hypothesis. EMG was recorded at 2000 Hz via fine-wire electrodes implanted into two suites of four muscles in the left forelimb while sloths performed suspensory hanging (SH), suspensory walking (SW) and vertical climbing (VC). All muscles were minimally active for SH. During SW and VC, sloths moved slowly (duty factor: 0.83) and activation patterns were consistent between behaviors; the flexors were activated early and for a large percentage of limb contact, whereas the extensors were activated for shorter burst durations on average and showed biphasic (contact and swing) activity. Muscle activities were maximal for the elbow flexors and lowest for the carpal/digital flexors, and overall activity was significantly greater for SW and VC compared with SH. Wavelet analysis indicated high mean EMG frequencies from the myoelectric intensity spectra coupled with low burst intensities for SH, although the opposite pattern occurred for SW and VC, with the shoulder flexors and elbow flexor, m. brachioradialis, having extremely low mean EMG frequencies that are consistent with recruitment of slow fibers. Collectively, these findings support the hypothesis and suggest that sloths may selectively recruit smaller, fast motor units for suspensory postures but have the ability to offset the cost of force production by recruitment of large, slow motor units during locomotion.
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Affiliation(s)
- Marissa A Gorvet
- Department of Biological Sciences, Youngstown State University, Youngstown OH 44555, USA
| | - James M Wakeling
- Department of Biomedical Physiology and Kinesiology, Simon Fraser University, BC V5A 1S6, Canada
| | - Dakota M Morgan
- Department of Biological Sciences, Youngstown State University, Youngstown OH 44555, USA
| | | | | | - Michael T Butcher
- Department of Biological Sciences, Youngstown State University, Youngstown OH 44555, USA
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17
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Moreira-Soto A, Arroyo-Murillo F, Sander AL, Rasche A, Corman V, Tegtmeyer B, Steinmann E, Corrales-Aguilar E, Wieseke N, Avey-Arroyo J, Drexler JF. Cross-order host switches of hepatitis C-related viruses illustrated by a novel hepacivirus from sloths. Virus Evol 2020; 6:veaa033. [PMID: 32704383 PMCID: PMC7368370 DOI: 10.1093/ve/veaa033] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
The genealogy of the hepatitis C virus (HCV) and the genus Hepacivirus remains elusive despite numerous recently discovered animal hepaciviruses (HVs). Viruses from evolutionarily ancient mammals might elucidate the HV macro-evolutionary patterns. Here, we investigated sixty-seven two-toed and nine three-toed sloths from Costa Rica for HVs using molecular and serological tools. A novel sloth HV was detected by reverse transcription polymerase chain reaction (RT-PCR) in three-toed sloths (2/9, 22.2%; 95% confidence interval (CI), 5.3-55.7). Genomic characterization revealed typical HV features including overall polyprotein gene structure, a type 4 internal ribosomal entry site in the viral 5'-genome terminus, an A-U-rich region and X-tail structure in the viral 3'-genome terminus. Different from other animal HVs, HV seropositivity in two-toed sloths was low at 4.5 per cent (3/67; CI, 1.0-12.9), whereas the RT-PCR-positive three-toed sloths were seronegative. Limited cross-reactivity of the serological assay implied exposure of seropositive two-toed sloths to HVs of unknown origin and recent infections in RT-PCR-positive animals preceding seroconversion. Recent infections were consistent with only 9 nucleotide exchanges between the two sloth HVs, located predominantly within the E1/E2 encoding regions. Translated sequence distances of NS3 and NS5 proteins and host comparisons suggested that the sloth HV represents a novel HV species. Event- and sequence distance-based reconciliations of phylogenies of HVs and of their hosts revealed complex macro-evolutionary patterns, including both long-term evolutionary associations and host switches, most strikingly from rodents into sloths. Ancestral state reconstructions corroborated rodents as predominant sources of HV host switches during the genealogy of extant HVs. Sequence distance comparisons, partial conservation of critical amino acid residues associated with HV entry and selection pressure signatures of host genes encoding entry and antiviral protein orthologs were consistent with HV host switches between genetically divergent mammals, including the projected host switch from rodents into sloths. Structural comparison of HCV and sloth HV E2 proteins suggested conserved modes of hepaciviral entry. Our data corroborate complex macro-evolutionary patterns shaping the genus Hepacivirus, highlight that host switches are possible across highly diverse host taxa, and elucidate a prominent role of rodent hosts during the Hepacivirus genealogy.
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Affiliation(s)
- Andres Moreira-Soto
- Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Virology, Berlin 10117, Germany.,Virology-CIET, Faculty of Microbiology, University of Costa Rica, San José, Costa Rica
| | | | - Anna-Lena Sander
- Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Virology, Berlin 10117, Germany
| | - Andrea Rasche
- Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Virology, Berlin 10117, Germany
| | - Victor Corman
- Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Virology, Berlin 10117, Germany
| | - Birthe Tegtmeyer
- Institute for Experimental Virology, TWINCORE Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Medical School Hannover (MHH) and the Helmholtz Centre for Infection Research (HZI), Hannover 30625, Germany
| | - Eike Steinmann
- Department of Molecular and Medical Virology, Faculty of Medicine, Ruhr-University Bochum, Bochum 44801, Germany
| | | | - Nicolas Wieseke
- Swarm Intelligence and Complex Systems Group, Department of Computer Science, Leipzig University, Leipzig, Germany
| | | | - Jan Felix Drexler
- Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Virology, Berlin 10117, Germany.,German Centre for Infection Research (DZIF), Germany
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18
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de Oliveira Filho EF, Moreira-Soto A, Fischer C, Rasche A, Sander AL, Avey-Arroyo J, Arroyo-Murillo F, Corrales-Aguilar E, Drexler JF. Sloths host Anhanga virus-related phleboviruses across large distances in time and space. Transbound Emerg Dis 2019; 67:11-17. [PMID: 31420970 PMCID: PMC7168552 DOI: 10.1111/tbed.13333] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 08/06/2019] [Accepted: 08/09/2019] [Indexed: 12/25/2022]
Abstract
Sloths are genetically and physiologically divergent mammals. Phleboviruses are major arthropod‐borne viruses (arboviruses) causing disease in humans and other animals globally. Sloths host arboviruses, but virus detections are scarce. A phlebovirus termed Anhanga virus (ANHV) was isolated from a Brazilian Linnaeus's two‐toed sloth (Choloepus didactylus) in 1962. Here, we investigated the presence of phleboviruses in sera sampled in 2014 from 74 Hoffmann's two‐toed (Choloepus hoffmanni, n = 65) and three‐toed (Bradypus variegatus, n = 9) sloths in Costa Rica by broadly reactive RT‐PCR. A clinically healthy adult Hoffmann's two‐toed sloth was infected with a phlebovirus. Viral load in this animal was high at 8.5 × 107 RNA copies/ml. The full coding sequence of the virus was determined by deep sequencing. Phylogenetic analyses and sequence distance comparisons revealed that the new sloth virus, likely representing a new phlebovirus species, provisionally named Penshurt virus (PEHV), was most closely related to ANHV, with amino acid identities of 93.1%, 84.6%, 94.7% and 89.0% in the translated L, M, N and NSs genes, respectively. Significantly more non‐synonymous mutations relative to ANHV occurred in the M gene encoding the viral glycoproteins and in the NSs gene encoding a putative interferon antagonist compared to L and N genes. This was compatible with viral adaptation to different sloth species and with micro‐evolutionary processes associated with immune evasion during the genealogy of sloth‐associated phleboviruses. However, gene‐wide mean dN/dS ratios were low at 0.02–0.15 and no sites showed significant evidence for positive selection, pointing to comparable selection pressures within sloth‐associated viruses and genetically related phleboviruses infecting hosts other than sloths. The detection of a new phlebovirus closely‐related to ANHV, in sloths from Costa Rica fifty years after and more than 3,000 km away from the isolation of ANHV confirmed the host associations of ANHV‐related phleboviruses with the two extant species of two‐toed sloths.
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Affiliation(s)
- Edmilson F de Oliveira Filho
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany
| | - Andrés Moreira-Soto
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany.,Faculty of Microbiology, Virology-CIET (Research Center for Tropical Diseases), University of Costa Rica, San José, Costa Rica
| | - Carlo Fischer
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany
| | - Andrea Rasche
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany
| | - Anna-Lena Sander
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany
| | | | | | - Eugenia Corrales-Aguilar
- Faculty of Microbiology, Virology-CIET (Research Center for Tropical Diseases), University of Costa Rica, San José, Costa Rica
| | - Jan Felix Drexler
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany.,German Centre for Infection Research (DZIF), associated partner site Charité, Berlin, Germany.,Martsinovsky Institute of Medical Parasitology, Tropical and Vector-Borne Diseases, Sechenov University, Moscow, Russia
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