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Mazars F, Zaragoza G, Delaude L. The facile alkylation and iodination of imidazol(in)ium salts in the presence of cesium carbonate. Chem Commun (Camb) 2023; 59:14528-14531. [PMID: 37942885 DOI: 10.1039/d3cc04971j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
The alkylation or iodination of imidazol(in)ium salts takes place readily in the presence of Cs2CO3. The procedure is very easy to implement and provides facile and straightforward access to a wealth of C2-substituted azolium salts. Furthermore, a C2α alkylation is also feasible, which extends the chemistry of NHCs and weak bases to their NHO analogues.
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Affiliation(s)
- François Mazars
- Laboratory of Catalysis, MolSys Research Unit, Université de Liège, Institut de Chimie Organique (B6a), Allée du six Août 13, Liège 4000, Belgium.
| | - Guillermo Zaragoza
- Unidade de Difracción de Raios X, RIAIDT, Universidade de Santiago de Compostela, Campus Vida, 15782 Santiago de Compostela, Spain
| | - Lionel Delaude
- Laboratory of Catalysis, MolSys Research Unit, Université de Liège, Institut de Chimie Organique (B6a), Allée du six Août 13, Liège 4000, Belgium.
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2
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Schrage BR, Frkonja-Kuczin A, Zhang B, Hobbs MS, Chen WY, Boika A, Ziegler CJ. Pyridinium ferrocene sulfonate salts: Highly soluble materials for electrochemical applications. J Organomet Chem 2023. [DOI: 10.1016/j.jorganchem.2023.122695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/30/2023]
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Stoppelman JP, McDaniel JG. Physics-based, neural network force fields for reactive molecular dynamics: Investigation of carbene formation from [EMIM +][OAc -]. J Chem Phys 2021; 155:104112. [PMID: 34525833 DOI: 10.1063/5.0063187] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Reactive molecular dynamics simulations enable a detailed understanding of solvent effects on chemical reaction mechanisms and reaction rates. While classical molecular dynamics using reactive force fields allows significantly longer simulation time scales and larger system sizes compared with ab initio molecular dynamics, constructing reactive force fields is a difficult and complex task. In this work, we describe a general approach following the empirical valence bond framework for constructing ab initio reactive force fields for condensed phase simulations by combining physics-based methods with neural networks (PB/NNs). The physics-based terms ensure the correct asymptotic behavior of electrostatic, polarization, and dispersion interactions and are compatible with existing solvent force fields. NNs are utilized for a versatile description of short-range orbital interactions within the transition state region and accurate rendering of vibrational motion of the reacting complex. We demonstrate our methodology for a simple deprotonation reaction of the 1-ethyl-3-methylimidazolium cation with acetate to form 1-ethyl-3-methylimidazol-2-ylidene and acetic acid. Our PB/NN force field exhibits ∼1 kJ mol-1 mean absolute error accuracy within the transition state region for the gas-phase complex. To characterize the solvent modulation of the reaction profile, we compute potentials of mean force for the gas-phase reaction as well as the reaction within a four-ion cluster and benchmark against ab initio molecular dynamics simulations. We find that the surrounding ionic environment significantly destabilizes the formation of the carbene product, and we show that this effect is accurately captured by the reactive force field. By construction, the PB/NN potential may be directly employed for simulations of other solvents/chemical environments without additional parameterization.
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Affiliation(s)
- John P Stoppelman
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Jesse G McDaniel
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
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Mazars F, Hrubaru M, Tumanov N, Wouters J, Delaude L. Synthesis of Azolium‐2‐dithiocarboxylate Zwitterions under Mild, Aerobic Conditions. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100274] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- François Mazars
- Laboratory of Catalysis MolSys Research Unit Université de Liège Institut de Chimie Organique (B6a) Allée du six Août 13 4000 Liège Belgium
| | - Madalina Hrubaru
- Center for Organic Chemistry “Costin D. Nenitescu” Romanian Academy Spl Independentei Bucureşti, 202B 060023 Bucharest Romania
| | - Nikolay Tumanov
- Department of Chemistry Université de Namur Rue de Bruxelles 61 5000 Namur Belgium
| | - Johan Wouters
- Department of Chemistry Université de Namur Rue de Bruxelles 61 5000 Namur Belgium
| | - Lionel Delaude
- Laboratory of Catalysis MolSys Research Unit Université de Liège Institut de Chimie Organique (B6a) Allée du six Août 13 4000 Liège Belgium
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Salvitti C, Bortolami M, Chiarotto I, Troiani A, de Petris G. The Knoevenagel condensation catalysed by ionic liquids: a mass spectrometric insight into the reaction mechanism. NEW J CHEM 2021. [DOI: 10.1039/d1nj03594k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Mass spectrometry was used to study the Knoevenagel condensation catalysed by imidazolium-based ionic liquids. Two pathways were highlighted by intercepting two different reaction intermediates: a base-catalysed and a carbene-catalysed mechanism.
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Affiliation(s)
- Chiara Salvitti
- Dipartimento di Chimica e Tecnologie del Farmaco, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy
| | - Martina Bortolami
- Dipartimento di Scienze di Base e Applicate per l’Ingegneria, Sapienza Università di Roma, Via Castro Laurenziano 7, Roma, Italy
| | - Isabella Chiarotto
- Dipartimento di Scienze di Base e Applicate per l’Ingegneria, Sapienza Università di Roma, Via Castro Laurenziano 7, Roma, Italy
| | - Anna Troiani
- Dipartimento di Chimica e Tecnologie del Farmaco, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy
| | - Giulia de Petris
- Dipartimento di Chimica e Tecnologie del Farmaco, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Roma, Italy
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Abstract
In this work the mechanism of the aldehyde umpolung reactions, catalyzed by azolium cations in the presence of bases, was studied through computational methods. Next to the mechanism established by Breslow in the 1950s that takes effect through the formation of a free carbene, we have suggested that these processes can follow a concerted asynchronous path, in which the azolium cation directly reacts with the substrate, avoiding the formation of the carbene intermediate. We hereby show that substituting the azolium cation, and varying the base or the substrate do not affect the preference for the concerted reaction mechanism. The concerted path was found to exhibit low barriers also for the reactions of thiamine with model substrates, showing that this path might have biological relevance. The dominance of the concerted mechanism can be explained through the specific structure of the key transition state, avoiding the liberation of the highly reactive, and thus unstable carbene lone pair, whereas activating the substrate through hydrogen-bonding interactions. Polar and hydrogen-bonding solvents, as well as the presence of the counterions of the azolium salts facilitate the reaction through carbenes, bringing the barriers of the two reaction mechanisms closer, in many cases making the concerted path less favorable. Thus, our data show that by choosing the exact components in a reaction, the mechanism can be switched to occur with or without carbenes.
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Affiliation(s)
- Sascha Gehrke
- Mulliken Center for Theoretical ChemistryUniversity of BonnBeringstr. 4+653115BonnGermany
| | - Oldamur Hollóczki
- Mulliken Center for Theoretical ChemistryUniversity of BonnBeringstr. 4+653115BonnGermany
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Galkin KI, Karlinskii BY, Kostyukovich AY, Gordeev EG, Ananikov VP. Ambident Reactivity of Imidazolium Cations as Evidence of the Dynamic Nature of N-Heterocyclic Carbene-Mediated Organocatalysis. Chemistry 2020; 26:8567-8571. [PMID: 32227612 DOI: 10.1002/chem.201905704] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 03/27/2020] [Indexed: 11/10/2022]
Abstract
This work reveals ambident nucleophilic reactivity of imidazolium cations towards carbonyl compounds at the C2 or C4 carbene centers depending on the steric properties of the substrates and reaction conditions. Such an adaptive behavior indicates the dynamic nature of organocatalysis proceeding via a covalent interaction of imidazolium carbenes with carbonyl substrates and can be explained by generation of the H-bonded ditopic carbanionic carbenes.
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Affiliation(s)
- Konstantin I Galkin
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Bogdan Ya Karlinskii
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Alexander Yu Kostyukovich
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Evgeniy G Gordeev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Valentine P Ananikov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, 119991, Moscow, Russia
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Apostolidou C. Regenerated Hoof Keratin from 1-Ethyl-3-Methylimidazolium Acetate and Insights into Disulfide-Ionic Liquid Interactions from MD Simulation. ChemistryOpen 2020; 9:695-702. [PMID: 32528792 PMCID: PMC7280737 DOI: 10.1002/open.202000096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 05/04/2020] [Indexed: 11/25/2022] Open
Abstract
Regeneration of the hoof keratin from ionic liquids was never successful in the past because the ionic liquids were not strong enough. However, this biomaterial starts to play a central role for the preparation of biofilms in the future. In the present study, hoof keratin was regenerated for the first time from an ionic liquid by experiment and characterized by FTIR spectroscopy, Differential Scanning Calorimetry (DSC) and Scanning Electron Microscopy (SEM). As 1-Ethyl-3-methylimidazolium acetate is strong enough to dissolve hooves, which have a lot of disulfide bonds, a Molecular Dynamics (MD) simulation was performed with this ionic liquid and diphenyl disulfide. The MD simulation reveals that not only the cation as postulated after experiments were carried out, but also the anion is very important for the dissolution process. This complete picture was and is not accessible via experiments and is therefore valuable for future investigations. The anion always interacts with the disulfide bond, whereas the cation prefers in some situations a strong H-O interaction with the anion. If the cations and the anions are separated from each other so that the cation can not interact with the anion, both interact with the disulfide bond. The high solvation power of this solvent is shown by the fact that the cation interacts from the left and right side and the anion from above and below the disulfide bond.
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Affiliation(s)
- Christina Apostolidou
- Mulliken Center for Theoretical ChemistryInstitute of Physical and Theoretical ChemistryRheinische Friedrich-Wilhelms-Universität BonnBeringstraße 453115BonnGermany
- Experimental work was done in: Chemical EngineeringUniversity of KwaZulu-Natal238 Mazisi Kunene Rd, GlenwoodDurban4001South Africa
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Blasius J, Elfgen R, Hollóczki O, Kirchner B. Glucose in dry and moist ionic liquid: vibrational circular dichroism, IR, and possible mechanisms. Phys Chem Chem Phys 2020; 22:10726-10737. [PMID: 32150178 DOI: 10.1039/c9cp06798a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ionic liquids and their mixtures with water show remarkable features in cellulose processing. For this reason, understanding the behavior of carbohydrates in ionic liquids is important. In the present study, we investigated three d-glucose isomers (α, β and open-chain) in 1-ethyl-3-methylimidazolium acetate in the presence and absence of water, through ab initio molecular dynamics simulations. In the complex hydrogen bonding network of these mixtures, the most interesting observation is that upon water addition every hydrogen bond elongates, except the glucose-glucose hydrogen bond for the open-chain and the α-form which shortens, clearly showing the beginning of the crystallization process. The ring glucose rearranges from on-top to in-plane and the open form changes from a coiled to a more linear arrangement when adding water which explains the contradiction that the center of mass distances of the glucose molecules with other glucose molecules grow while the hydrogen bonds shorten. The appearance of coiled open forms indicates that the previously suggested isomerization between these forms is possible and might play a role in the solubility of the related carbohydrates. The calculated IR and VCD spectra reveal insight into the intermolecular interactions, with good to excellent agreements with experimental spectra. Investigating the role of the cation, distances between the acidic carbon atom of the cation and the glucose carbon atom where ring closure and opening occurs are found, which are way shorter than dispersion-like interactions between aliphatic hydrocarbons.
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Affiliation(s)
- Jan Blasius
- Mulliken Center for Theoretical Chemistry, University of Bonn, Beringstraße 4 + 6, D-53115 Bonn, Germany.
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Abstract
The term "N-Heterocyclic carbene organocatalysis" is often invoked in organic synthesis for reactions that are catalyzed by different azolium salts in the presence of bases. Although the mechanism of these reactions is considered today evident, a closer look into the details that have been collected throughout the last century reveals that there are many open questions and even contradictions in the field. Emerging new theoretical and experimental results offer solutions to these problems, because they show that through considering alternative reaction mechanisms a more consistent picture on the catalytic process can be obtained. These novel perspectives will be able to extend the scope of the reactions that we call today N-heterocyclic carbene organocatalysis.
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Affiliation(s)
- Oldamur Hollóczki
- Mulliken Center for Theoretical ChemistryUniversity of BonnBeringstrasse 4+653115BonnGermany
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Tzouras NV, Nahra F, Falivene L, Cavallo L, Saab M, Van Hecke K, Collado A, Collett CJ, Smith AD, Cazin CSJ, Nolan SP. A Mechanistically and Operationally Simple Route to Metal-N-Heterocyclic Carbene (NHC) Complexes. Chemistry 2020; 26:4515-4519. [PMID: 32022329 DOI: 10.1002/chem.202000564] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Indexed: 11/08/2022]
Abstract
We have been puzzled by the involvement of weak organic and inorganic bases in the synthesis of metal-N-heterocyclic carbene (NHC) complexes. Such bases are insufficiently strong to permit the presumed required deprotonation of the azolium salt (the carbene precursor) prior to metal binding. Experimental and computational studies provide support for a base-assisted concerted process that does not require free NHC formation. The synthetic protocol was found applicable to a number of transition-metal- and main-group-centered NHC compounds and could become the synthetic route of choice to form M-NHC bonds.
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Affiliation(s)
- Nikolaos V Tzouras
- Department of Chemistry and Centre for Sustainable Chemistry, Ghent University, Krijgslaan 281,S-3, 9000, Ghent, Belgium
| | - Fady Nahra
- Department of Chemistry and Centre for Sustainable Chemistry, Ghent University, Krijgslaan 281,S-3, 9000, Ghent, Belgium.,Separation and Conversion Technology Unit, VITO (Flemish Institute for Technological Research), Boeretang 200, B-2400, Mol, Belgium
| | - Laura Falivene
- KAUST Catalysis Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Luigi Cavallo
- KAUST Catalysis Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Marina Saab
- Department of Chemistry and Centre for Sustainable Chemistry, Ghent University, Krijgslaan 281,S-3, 9000, Ghent, Belgium
| | - Kristof Van Hecke
- Department of Chemistry and Centre for Sustainable Chemistry, Ghent University, Krijgslaan 281,S-3, 9000, Ghent, Belgium
| | - Alba Collado
- EaStCHEM School of Chemistry, University of St Andrews, St Andrews, KY16 9ST, UK
| | | | - Andrew D Smith
- EaStCHEM School of Chemistry, University of St Andrews, St Andrews, KY16 9ST, UK
| | - Catherine S J Cazin
- Department of Chemistry and Centre for Sustainable Chemistry, Ghent University, Krijgslaan 281,S-3, 9000, Ghent, Belgium
| | - Steven P Nolan
- Department of Chemistry and Centre for Sustainable Chemistry, Ghent University, Krijgslaan 281,S-3, 9000, Ghent, Belgium
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Filippov A, Antzutkin ON, Shah FU. Rapid carbene formation increases ion diffusivity in an imidazolium acetate ionic liquid confined between polar glass plates. Phys Chem Chem Phys 2019; 21:22531-22538. [PMID: 31588443 DOI: 10.1039/c9cp04504j] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
1-Ethyl-3-methyl-imidazolium acetate ([EMIM][OAc]) is one of the most widely used ionic liquids for various applications. This study is focussed on the chemical stability of [EMIM][OAc] on the surfaces of polar glass plates. 1H and 13C NMR spectroscopy and NMR diffusometry of [EMIM][OAc] IL confined between glass plates with a specific surface area 105-106 m-1 are thoroughly investigated. A rapid and spontaneous reaction took place on the surfaces of glass plates leading to the formation of neutral chemical moieties as evident by the appearance of new signals in the 1H NMR spectra. These new products are assigned as N-heterocyclic carbene (NHC) and acetic acid. These neutral chemical moieties have significantly increased the ion diffusivity by dissociation of the cation and the anion in [EMIM][OAc] IL. The yield and rate of formation of NHC and acetic acid are found to increase with the increasing surface area of polar glass plates and the time of contact between the IL and glass surfaces. Based on NMR spectroscopy, a dissociative reaction mechanism is proposed for the formation of free NHC in the neat [EMIM][OAc] IL.
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Affiliation(s)
- Andrei Filippov
- Chemistry of Interfaces, Luleå University of Technology, SE-97187 Luleå, Sweden. and Kazan State Medical University, 420012 Kazan, Russia
| | - Oleg N Antzutkin
- Chemistry of Interfaces, Luleå University of Technology, SE-97187 Luleå, Sweden. and Department of Physics, Warwick University, Coventry CV4 7AL, UK
| | - Faiz Ullah Shah
- Chemistry of Interfaces, Luleå University of Technology, SE-97187 Luleå, Sweden.
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