Evaluation of direct and biochar carrier-based inoculation of Bacillus sp. on As- and Pb-contaminated technosol: effect on metal(loid) availability, Salix viminalis growth, and soil microbial diversity/activity

Biochar as a partner of plants and beneficial microorganisms to assist in-situ bioremediation of heavy metal contaminated soil

Synergistic remediation of heavy metal (HM) contaminated soil using beneficial microorganisms (BM) and plants is a common and effective in situ bioremediation method. However, the shortcomings of this approach are the low colonisation of BM under high levels of heavy metal stress (HMS) and the poor state of plant growth. Previous studies have overlooked the potential of biochar to mitigate the above problems and aid in-situ remediation. Therefore, this paper describes the characteristics and physicochemical properties of biochar. It is proposed that biochar enhances plant resistance to HMS and aids in situ bioremediation by increasing colonisation of BM and HM stability. On this basis, the paper focuses on the following possible mechanisms: specific biochar-derived organic matter regulates the transport of HMs in plants and promotes mycorrhizal colonisation via the abscisic acid signalling pathway and the karrikin signalling pathway; promotes the growth-promoting pathway of indole-3-acetic acid and increases expression of the nodule-initiating gene NIN; improvement of soil HM stability by ion exchange, electrostatic adsorption, redox and complex precipitation mechanisms. And this paper summarizes guidelines on how to use biochar-assisted remediation based on current research for reference. Finally, the paper identifies research gaps in biochar in the direction of promoting beneficial microbial symbiotic mechanisms, recognition and function of organic molecules, and factors affecting practical applications.

Influence of biochar addition and plant management (cutting and time) on ryegrass growth and migration of As and Pb during phytostabilization

Phytostabilization of metal-contaminated soils can be enabled or improved by biochar application. However, biochar-aided effects vary on biochar types, and little attention has been paid to plant management (time and cutting) to enhance phytostabilization efficiency in synergy with biochar. Therefore, biochars derived from pig manure (PM), Japanese knotweed (JK), and a mixture of both (P1J1) were applied to Pb and As mining soil with ryegrass cultivation to assess the biochar-induced effects on plant growth, dissolved organic matter (DOM), As and Pb mobility, and bioaccumulation within a phytostabilization strategy. Additional treatments involving the combined biochar (P1J1) and ryegrass were conducted to explore the influence of sequential cutting and growing time on facilitating phytostabilization efficacy. Biochar applications promoted plant growth, progressively increasing over time, but were not enhanced by cutting. Short and long-wavelength humic-like DOM substances identified in the soil pore water after biochar application varied depending on the biochar types used, providing evidence for the correlation among DOM changes, biochar origin, and metal immobilization. Biochar-treated soils exhibited reduced Pb availability and enhanced As mobility, with P1J1 stabilizing Pb significantly similar to PM while causing less As mobilization as JK did. The mobilized As did not result in increased plant As uptake; instead, all biochar-added plants showed a significant decrease in As and Pb concentrations compared to those without biochar. Soil available As decreased while available Pb increased with time, and cutting did not influence soil As behavior but did reduce soil Pb release. Nevertheless, plant As and Pb concentrations decreased over time, whereas those in multiple-cut plants were generally higher than those without cuts. Biochar, especially P1J1, along with growth time, holds promise in promoting plant biomass, reducing plant Pb and As concentrations, and minimizing the migration of PbAs within the soil.

Techniques and mechanisms of bacteria immobilization on biochar for further environmental and agricultural applications

Bacteria immobilization on biochar is a promising approach to achieve high concentration and stability of microbial cells for several applications. The present review addressed the techniques utilized for bacteria immobilization on biochar, discussing the mechanisms involved in this process, as well as the further utilization in bioremediation and agriculture. This article presents three immobilization techniques, which vary according to their procedures and conditions, including cell growth, adsorption, and adaptation. The mechanisms for cell immobilization are primarily adsorption and biofilm formation on biochar. The favorable characteristics of biochar immobilization depend on the pyrolysis methods, raw materials, and properties of biochar, such as surface area, pore size, pH, zeta potential, hydrophobicity, functional groups, and nutrients. Scanning electron microscope (SEM) and colony forming unit (CFU) are the analyses commonly carried out to verify the efficiency of bacteria immobilization. The benefits of applying biochar-immobilized bacteria include soil decontamination and quality improvement, which can improve plant growth and crop yield. Therefore, this emerging technology represents a promising solution for environmental and agricultural purposes. However, it is important to evaluate the potential adverse impacts on native microbiota by introducing exogenous microorganisms.

Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency

Microbial catabolic activity (MCA) defined as the degrading activity of microorganisms toward various organic compounds for their growth and energy is commonly used to assess soil microbial function potential. For its measure, several methods are available including multi-substrate-induced respiration (MSIR) measurement which allow to estimate functional diversity using selected carbon substrates targeting specific biochemical pathways. In this review, the techniques used to measure soil MCA are described and compared with respect to their accuracy and practical use. Particularly the efficiency of MSIR-based approaches as soil microbial function indicators was discussed by (i) showing their sensitivity to different agricultural practices including tillage, amendments, and cropping systems and (ii) by investigating their relationship with soil enzyme activities and some soil chemical properties (pH, soil organic carbon, cation exchange capacity). We highlighted the potential of these MSIR-based MCA measurements to improve microbial inoculant composition and to determine their potential effects on soil microbial functions. Finally, we have proposed ideas for improving MCA measurement notably through the use of molecular tools and stable isotope probing which can be combined with classic MSIR methods. Graphical abstract describing the interrelation between the different parts and the concepts developed in the review.

Biochar-immobilized Bacillus spp. for heavy metals bioremediation: A review on immobilization techniques, bioremediation mechanisms and effects on soil

Heavy metals contamination present risks to ecosystems and human health. Bioremediation is a technology that has been applied to minimize the levels of heavy metals contamination. However, the efficiency of this process varies according to several biotic and abiotic aspects, especially in environments with high concentrations of heavy metals. Therefore, microorganisms immobilization in different materials, such as biochar, emerges as an alternative to alleviate the stress that heavy metals have on microorganisms and thus improve the bioremediation efficiency. In this context, this review aimed to compile recent advances in the use of biochar as a carrier of bacteria, specifically Bacillus spp., with subsequent application for the bioremediation of soil contaminated with heavy metals. We present three different techniques to immobilize Bacillus spp. on biochar. Bacillus strains are capable of reducing the toxicity and bioavailability of metals, while biochar is a material that serves as a shelter for microorganisms and also contributes to bioremediation through the adsorption of contaminants. Thus, there is a synergistic effect between Bacillus spp. and biochar for the heavy metals bioremediation. Biomineralization, biosorption, bioreduction, bioaccumulation and adsorption are the mechanisms involved in this process. The application of biochar-immobilized Bacillus strains results in beneficial effects on the contaminated soil, such as the reduction of toxicity and accumulation of metals in plants, favoring their growth, in addition to increasing microbial and enzymatic activity in soil. However, competition and reduction of microbial diversity and the toxic characteristics of biochar are reported as negative impacts of this strategy. More studies using this emerging technology are essential to improve its efficiency, to elucidate the mechanisms and to balance positive and negative impacts, especially at the field scale.

for Sustainable Wheat Production

The genus Bacillus has been widely applied in contemporary agriculture as an environmentally-friendly biological agent. However, the real effect of commercial Bacillus-based fertilizers and pesticides varies immensely in the field. To harness Bacillus for efficient wheat production, we reviewed the diversity, functionality, and applicability of wheat-associated native Bacillus for the first time. Our main findings are: (i) Bacillus spp. inhabit the rhizosphere, root, stem, leaf, and kernel of wheat; (ii) B. subtilis and B. velezensis are the most widely endophytic species that can be isolated from both below and aboveground tissues; (iii) major functions of these representative strains are promotion of plant growth and alleviation of both abiotic and biotic stresses in wheat; (iv) stability and effectiveness are 2 major challenges during field application; (v) a STVAE pipeline that includes 5 processes, namely, Screen, Test, Validation, Application, and Evaluation, has been proposed for the capture and refinement of wheat-associated Bacillus spp. In particular, this review comprehensively addresses possible solutions, concerns, and criteria during the development of native Bacillus-based inoculants for sustainable wheat production.

Bacillus-Loaded Biochar as Soil Amendment for Improved Germination of Maize Seeds

Biochar is considered one of the most promising long-term solutions for soil quality improvement, representing an ideal environment for microorganisms' immobilization. Hence there is a possibility to design microbial products formulated using biochar as a solid carrier. The present study was aimed at development and characterization of Bacillus-loaded biochar to be applied as a soil amendment. The producing microorganism Bacillus sp. BioSol021 was evaluated in terms of plant growth promotion traits, indicating significant potential for production of hydrolytic enzymes, indole acetic acid (IAA) and surfactin and positive tests for ammonia and 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase production. Soybean biochar was characterised in terms of physicochemical properties to evaluate its suitability for agricultural applications. The experimental plan for Bacillus sp. BioSol021 immobilisation to biochar included variation of biochar concentration in cultivation broth and adhesion time, while the soil amendment effectiveness was evaluated during maize germination. The best results in terms of maize seed germination and seedling growth promotion were achieved by applying 5% of biochar during the 48 h immobilisation procedure. Germination percentage, root and shoot length and seed vigour index were significantly improved when using Bacillus-biochar soil amendment compared to separate treatments including biochar and Bacillus sp. BioSol021 cultivation broth. The results indicated the synergistic effect of producing microorganism and biochar on maize seed germination and seedling growth promotion, pointing out the promising potential of this proposed multi-beneficial solution for application in agricultural practices.

Immobilization of microbes on biochar for water and soil remediation: A review

Biochar has caught great attention over the last decade with the loose and porous structure, and carbon stability provides suitable living conditions for the growth and activity of microorganisms. This review provided a comprehensive summary of biochar immobilization microbe (BIM) in water and soil decontamination. Firstly, the bacterial immobilization techniques including adsorption, entrapping, and covalence methods were exhibited. Secondly, the applications of BIM in water and soil environmental remediation were introduced, mainly including the treatment of organic pollutants, heavy metals, and N/P, among which the most frequently immobilized microorganism was Bacillus. Then, the mechanisms of adsorption, redox, and degradation were analyzed. Finally, pertinent questions for future research of BIM technology were proposed. The purpose of this paper is to provide useful background information for the selection of better biochar fixation microorganisms for water and soil remediation.

Effect of Biochar Application Depth on a Former Mine Technosol: Impact on Metal(Loid)s and Alnus Growth

The contamination of soil by potentially toxic elements (PTEs) is a problem resulting from various anthropic activities including the exploitation of mines, which determines an accumulation of metal(loid)s in the surrounding area. It is therefore necessary to use remediation techniques to prevent the potential damage to human health and the ecosystem. One of these techniques is phytoremediation, which involves the revegetation of contaminated areas in such a way as to reduce the spread of contaminants and entry into the groundwater by stabilizing the metal(loid)s in the soil, decreasing their mobility. To increase the ability of plants to grow under the extreme conditions of contaminated soils, it is necessary to use amendments, which can also intervene directly in reducing the mobility of contaminants. In this study, an open-field mesocosm was set up using a former mining technosol contaminated mainly by As. A biochar produced from hardwood was added at two different depths to evaluate the effectiveness of these application modalities for an overall observation duration of 17 months. Iron sulphate was also applied in both non-biochar and biochar amended conditions. In addition, trees of Alnus sp. were planted to examine the effectiveness of these plants for their use in soil remediation and the effect of the treatments used. The results showed an increase in soil pH induced by the biochar, which decreased over time. During the period examined, the application of biochar in the deepest layer was able to retain As more effectively. The Alnus sp. showed similar growth rates among the various treatments, resulting from its tolerance towards arsenic.