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Wan JJ, Gu J, Li J, Guo N. Shannon Entropy in LS-Coupled Configuration Space for Ni-like Isoelectronic Sequence. Entropy 2022; 24:e24020267. [PMID: 35205561 PMCID: PMC8870868 DOI: 10.3390/e24020267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 02/01/2022] [Accepted: 02/03/2022] [Indexed: 12/04/2022]
Abstract
The Shannon entropy in an LS-coupled configuration space has been calculated through a transformation from that in a jj-coupled configuration space for a Ni-like isoelectronic sequence. The sudden change of Shannon entropy, information exchange, eigenlevel anticrossing, and strong configuration interaction have been presented for adjacent levels. It is shown that eigenlevel anticrossing is a sufficient and necessary condition for the sudden change of Shannon entropy, and both of them are a sufficient condition for information exchange, which is the same as the case of the jj-coupled configuration space. It is found that the structure of sudden change from jj-coupled into LS-coupled configuration spaces through the LS-jj transformation is invariant for Shannon entropy along the isoelectronic sequence. What is more, in an LS-coupled configuration space, there are a large number of information exchanges between energy levels whether with or without strong configuration interaction, and most of the ground and single excited states of Ni-like ions are more suitable to be described by a jj-coupled or other configuration basis set instead of an LS-coupled configuration basis set according to the configuration mixing coefficients and their Shannon entropy. In this sense, Shannon entropy can also be used to measure the applicability of a configuration basis set or the purity of atomic state functions in different coupling schemes.
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Wan J, Guo N. Shannon Entropy in Configuration Space for Ni-Like Isoelectronic Sequence. Entropy (Basel) 2019; 22:E33. [PMID: 33285808 DOI: 10.3390/e22010033] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 12/20/2019] [Accepted: 12/21/2019] [Indexed: 12/03/2022]
Abstract
Discrete Shannon entropy was introduced in view of the mathematical properties of multiconfiguration methods and then used to interpret the information in atomic states expressed by the multiconfiguration Dirac–Hartree–Fock wavefunction for Ni-like isoelectronic sequence. Moreover, the relationship between the concepts, including sudden change of Shannon entropy, information exchange, eigenlevel anticrossing, and strong configuration interaction, was clarified by induction on the basis of the present calculation of the energy structure for Ni-like isoelectronic sequence. It was found that there is an interesting connection between the change of Shannon entropies and eigenlevel anticrossings, along with the nuclear charge Z, which is helpful to conveniently locate the position of eigenlevel anticrossings and information exchanging and understand them from the point of view of information, besides the traditional physical concepts. Especially, it is concluded that in a given configuration space eigenlevel anticrossing is a sufficient and necessary condition for the sudden change of Shannon entropy, which is also a sufficient condition for information exchange.
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Abstract
In this report, we present three generalized expressions of Shannon’s entropy using the electron densities of position and momentum spaces. Such expressions were obtained using the definition of deformed logarithm introduced by Tsallis. We show that only one expression fulfils the dimensionless criterion, it is strictly positive overall space and follows a growing behavior with respect to the electron number. We also found that by using some values of [Formula: see text], it is possible to reproduce the general trends of the radial distribution in position space and momentum space of the neon atom.
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Affiliation(s)
- N. Flores-Gallegos
- Benemérita Universidad de Guadalajara, Centro Universitario de los Valles, Carretera Guadalajara — Ameca Km. 45.5, C.P. 46600, Ameca, Jalisco, México
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Esquivel RO, Molina-Espíritu M, López-Rosa S, Soriano-Correa C, Barrientos-Salcedo C, Kohout M, Dehesa JS. Predominant information quality scheme for the essential amino acids: an information-theoretical analysis. Chemphyschem 2015; 16:2571-81. [PMID: 26175003 DOI: 10.1002/cphc.201500282] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 05/11/2015] [Indexed: 11/05/2022]
Abstract
In this work we undertake a pioneer information-theoretical analysis of 18 selected amino acids extracted from a natural protein, bacteriorhodopsin (1C3W). The conformational structures of each amino acid are analyzed by use of various quantum chemistry methodologies at high levels of theory: HF, M062X and CISD(Full). The Shannon entropy, Fisher information and disequilibrium are determined to grasp the spatial spreading features of delocalizability, order and uniformity of the optimized structures. These three entropic measures uniquely characterize all amino acids through a predominant information-theoretic quality scheme (PIQS), which gathers all chemical families by means of three major spreading features: delocalization, narrowness and uniformity. This scheme recognizes four major chemical families: aliphatic (delocalized), aromatic (delocalized), electro-attractive (narrowed) and tiny (uniform). All chemical families recognized by the existing energy-based classifications are embraced by this entropic scheme. Finally, novel chemical patterns are shown in the information planes associated with the PIQS entropic measures.
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Affiliation(s)
- Rodolfo O Esquivel
- Departamento de Química, Universidad Autónoma Metropolitana, 09340-México, D.F. (México). .,Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada (Spain).
| | | | - Sheila López-Rosa
- Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada (Spain).,Departamento de Física Aplicada II, Universidad de Sevilla, 41012-Sevilla (Spain)
| | - Catalina Soriano-Correa
- Laboratorio de Química Computacional, FES-Zaragoza, Universidad Nacional Autónoma de México, 09230-Iztapalapa, México, D.F. (México)
| | - Carolina Barrientos-Salcedo
- Facultad de Bioanálisis-Veracruz, Universidad Veracruzana, Laboratorio de Química Médica y Quimiogenómica, 91700-Veracruz (México)
| | - Miroslav Kohout
- Max Planck Institute for Chemical Physics of Solids, Noethnitzer Str. 40, 01187-Dresden (Germany)
| | - Jesús S Dehesa
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada (Spain)
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Esquivel RO, Liu S, Angulo JC, Dehesa JS, Antolín J, Molina-Espíritu M. Fisher Information and Steric Effect: Study of the Internal Rotation Barrier of Ethane. J Phys Chem A 2011; 115:4406-15. [DOI: 10.1021/jp1095272] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Rodolfo O. Esquivel
- Departamento de Química, Universidad Autónoma Metropolitana, 09340 México D.F., México
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, North Carolina 27599-3420, United States
| | | | | | - Juan Antolín
- Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
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Moustakidis CC, Psonis VP, Chatzisavvas KC, Panos CP, Massen SE. Statistical measure of complexity and correlated behavior of Fermi systems. Phys Rev E Stat Nonlin Soft Matter Phys 2010; 81:011104. [PMID: 20365320 DOI: 10.1103/physreve.81.011104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2009] [Revised: 10/19/2009] [Indexed: 05/29/2023]
Abstract
We apply the statistical measure of complexity, introduced by López-Ruiz, Mancini, and Calbet (LMC), to uniform Fermi systems. We investigate the connection between information and complexity measures with the strongly correlated behavior of various Fermi systems as nuclear matter, electron gas, and liquid helium. We examine the possibility that LMC complexity can serve as an index quantifying correlations in the specific system and to which extent could be related with experimental quantities. Moreover, we concentrate on thermal effects on the complexity of ideal Fermi systems. We find that complexity behaves, both at low and high values of temperature, in a similar way as the specific heat.
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Affiliation(s)
- Ch C Moustakidis
- Department of Theoretical Physics, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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López-Rosa S, Esquivel RO, Angulo JC, Antolín J, Dehesa JS, Flores-Gallegos N. Fisher Information Study in Position and Momentum Spaces for Elementary Chemical Reactions. J Chem Theory Comput 2009; 6:145-54. [DOI: 10.1021/ct900544m] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Sheila López-Rosa
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada, Spain, Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada, Spain, Departamento de Química, Universidad Autónoma Metropolitana, 09340-México D.F., México, and Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
| | - Rodolfo O. Esquivel
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada, Spain, Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada, Spain, Departamento de Química, Universidad Autónoma Metropolitana, 09340-México D.F., México, and Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
| | - Juan Carlos Angulo
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada, Spain, Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada, Spain, Departamento de Química, Universidad Autónoma Metropolitana, 09340-México D.F., México, and Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
| | - Juan Antolín
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada, Spain, Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada, Spain, Departamento de Química, Universidad Autónoma Metropolitana, 09340-México D.F., México, and Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
| | - Jesús S. Dehesa
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada, Spain, Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada, Spain, Departamento de Química, Universidad Autónoma Metropolitana, 09340-México D.F., México, and Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
| | - Nelson Flores-Gallegos
- Departamento de Física Atómica, Molecular y Nuclear, Universidad de Granada, 18071-Granada, Spain, Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, 18071-Granada, Spain, Departamento de Química, Universidad Autónoma Metropolitana, 09340-México D.F., México, and Departamento de Física Aplicada, EUITIZ, Universidad de Zaragoza, 50018-Zaragoza, Spain
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