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Zhang P, Peterson SD, Porfiri M. Dipole- and vortex sheet-based models of fish swimming. J Theor Biol 2023; 556:111313. [PMID: 36261068 DOI: 10.1016/j.jtbi.2022.111313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Revised: 09/26/2022] [Accepted: 10/10/2022] [Indexed: 11/17/2022]
Abstract
Elucidating the hydrodynamics of fish swimming is critical to identifying the processes underlying fish orientation and schooling. Due to their mathematical tractability, models based on potential flow are preferred in the study of bidirectional interactions of fish with their surroundings. Dipole-based models that assimilate fish to pairs of vortices are particularly enticing, but yet to be thoroughly validated. Here, we embark on a computational fluid dynamics (CFD) campaign informed by experimental data to validate the accuracy of dipole-based models. The locomotory patterns of a fish undergoing carangiform swimming are reconstructed from existing experimental data, which are used as inputs to CFD simulations of a fish swimming in a channel flow. We demonstrate that dipole-based models are accurate in capturing key features of the fluid flow, but cannot predict the elongated flow streamlines around the fish that are evident in CFD. To address this issue, we propose an alternative model that replaces each vortex in the pair with a sheet along the fish length. Using a pair of vortex sheets that span approximately 80% of the fish body length with a separation distance of approximately 50% of the body width, the model is successful in predicting the fluid flow around the swimming fish for a range of background flow speeds and channel widths. The proposed model shows improved accuracy at the cost of a mildly increased computational effort, thereby constituting an ideal basis for research on fish hydrodynamics.
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Affiliation(s)
- Peng Zhang
- Department of Mechanical and Aerospace Engineering and Center for Urban Science and Progress, New York University Tandon School of Engineering, 370 Jay Street, Brooklyn, 11201, NY, USA; Department of Mechanical Engineering, Tennessee Technological University, 115 W. 10th Street, Cookeville, 38505, TN, USA
| | - Sean D Peterson
- Mechanical and Mechatronics Engineering Department, University of Waterloo, 200 University Avenue West, Waterloo, N2L 3G1, ON, Canada
| | - Maurizio Porfiri
- Department of Mechanical and Aerospace Engineering, Department of Biomedical Engineering, and Center for Urban Science and Progress, New York University Tandon School of Engineering, 370 Jay Street, Brooklyn, 11201, NY, USA.
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Doi K, Takagi T, Mitsunaga Y, Torisawa S. Hydrodynamical effect of parallelly swimming fish using computational fluid dynamics method. PLoS One 2021; 16:e0250837. [PMID: 33939762 PMCID: PMC8092777 DOI: 10.1371/journal.pone.0250837] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 04/14/2021] [Indexed: 11/20/2022] Open
Abstract
Fish form schools because of many possible reasons. However, the hydrodynamic mechanism whereby the energy efficiency of fish schools is improved still remains unclear. There are limited examples of fish models based on actual swimming movements using simulation, and the movements in existing models are simple. Therefore, in this study, we analyzed the swimming behavior of Biwa salmon (Oncorhynchus sp., a salmonid fish) using image analyses and formulated its swimming motion. Moreover, computational fluid dynamics analysis was carried out using the formulated swimming motion to determine the fluid force acting on the fish body model with real fish swimming motion. The swimming efficiency of the fish model under parallel swimming was obtained from the calculated surrounding fluid force and compared for different neighboring distances. The flow field around the fish model was also examined. The swimming efficiency of two fish models swimming parallelly was improved by approximately 10% when they were separated by a distance of 0.4L, where L is the total length of the model. In addition, the flow field behind the fish body was examined under both inphase and antiphase conditions and at inter-individual distances of 0.8L and 1.2L. The apparent flow speed in the distance range of 0.5–2.0L from the midpoint of the snouts of the two individuals was lower than the swimming speed. The pressure distribution on the fish model showed an elevated pressure at the caudal fin. Interestingly, we obtained an isopleth map similar to that of a caudal peduncle. To avoid a negative thrust, the aft part of the body must be thin, as shown in the isopleth map obtained in this study.
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Affiliation(s)
- Keisuke Doi
- Graduate school of Agriculture, Kindai University, Nakamachi, Nara, Japan
| | - Tsutomu Takagi
- Faculty of Fisheries Sciences Graduate school of Fisheries Sciences Hokkaido University, Minato, Hakodate, Hokkaido, Japan
| | - Yasushi Mitsunaga
- Graduate school of Agriculture, Kindai University, Nakamachi, Nara, Japan
| | - Shinsuke Torisawa
- Graduate school of Agriculture, Kindai University, Nakamachi, Nara, Japan
- * E-mail:
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Chen D, Cui X, Chen H. Dual-composite drag-reduction surface based on the multilayered structure and mechanical properties of tuna skin. Microsc Res Tech 2021; 84:1862-1872. [PMID: 33665946 DOI: 10.1002/jemt.23743] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/27/2021] [Accepted: 02/14/2021] [Indexed: 11/06/2022]
Abstract
Energy efficiency and friction reduction have attracted considerable research attention. To design low drag surfaces, researchers derived inspiration from nature on various types of drag reduction methods with exceptional functional surfaces, such as fish skin that possesses low friction. Fishes with high-performance swimming possess a range of physiological and mechanical adaptations that are of considerable interest to physiologists, ecologists, and engineers. Although tuna is a fast-swimming ocean-based predator, most people focus their attention on its nutritional value. In this study, the multilayered structures and mechanical properties of tuna skin are first analyzed, and then the drag-reduction effect of the bionic fish-scale and dual-composite surfaces are studied based on the computational fluid dynamics method. The results indicate that tuna skin is composed of five layers, with the fish scale covered by a flexible epidermis layer. According to the uniaxial tension results, the modulus and tensile strength of the epidermis are obtained as 1.17 and 20 MPa, respectively. The nanoindentation results show that the modulus and hardness of the outer surface of the fish scale are larger than that of the inner surface, while those of the dry state are larger than those of the hydrated state. The simulation results show that both the bionic fish-scale and dual-composite surfaces display drag reduction, with the maximum drag-reduction rate of 25.7% achieved by the bionic dual-composite surface. These findings can offer a reference for in-depth performance analysis of the hydrodynamics of tuna and provide new sources of inspiration for drag reduction and antifouling.
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Affiliation(s)
- Dengke Chen
- School of Mechanical Engineering and Automation, Beihang University, Beijing, China
| | - Xianxian Cui
- School of Mechanical Engineering and Automation, Beihang University, Beijing, China
| | - Huawei Chen
- School of Mechanical Engineering and Automation, Beihang University, Beijing, China.,Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, China
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Li X. Hydrodynamic Analysis for the Morphing Median Fins of Tuna during Yaw Motions. Appl Bionics Biomech 2021; 2021:6630839. [PMID: 33488768 DOI: 10.1155/2021/6630839] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 12/09/2020] [Accepted: 12/15/2020] [Indexed: 11/30/2022] Open
Abstract
Tuna can change the area and shape of the median fins, including the first dorsal, second dorsal, and anal fins. The morphing median fins have the ability of adjusting the hydrodynamic forces, thereby affecting the yaw mobility of tuna to a certain extent. In this paper, the hydrodynamic analysis of the median fins under different morphing states is carried out by the numerical method, so as to clarify the influence of the erected median fins on the yaw maneuvers. By comparing the two morphing states of erected and depressed, it can be concluded that the erected median fins can increase their own hydrodynamic forces during the yaw movement. However, the second dorsal and anal fins have limited influence on the yaw maneuverability, and they tend to maintain the stability of tuna. The first dorsal fin has more lift increment in the erection state, which can obviously affect the hydrodynamic performance of tuna. Moreover, as the median fins are erected, the hydrodynamic forces of the tuna's body increase synchronously due to the interaction between the body and the median fins, which is also very beneficial to the yaw motion. This study indicates that tuna can use the morphing median fins to adjust its mobility and stability, which provides a new idea for the design of robotic fish.
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Gleiss AC, Schallert RJ, Dale JJ, Wilson SG, Block BA. Direct measurement of swimming and diving kinematics of giant Atlantic bluefin tuna ( Thunnus thynnus). R Soc Open Sci 2019; 6:190203. [PMID: 31218059 PMCID: PMC6549966 DOI: 10.1098/rsos.190203] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 04/09/2019] [Indexed: 05/24/2023]
Abstract
Tunas possess a range of physiological and mechanical adaptations geared towards high-performance swimming that are of considerable interest to physiologists, ecologists and engineers. Advances in biologging have provided significant improvements in understanding tuna migrations and vertical movement patterns, yet our understanding of the locomotion and swimming mechanics of these fish under natural conditions is limited. We equipped Atlantic bluefin tuna (Thunnus thynnus) with motion-sensitive tags and video cameras to quantify the gaits and kinematics used by wild fish. Our data reveal significant variety in the locomotory kinematics of Atlantic bluefin tuna, ranging from continuous locomotion to two types of intermittent locomotion. The tuna sustained swimming speeds in excess of 1.5 m s-1 (0.6 body lengths s-1), while beating their tail at a frequency of approximately 1 Hz. While diving, some descents were entirely composed of passive glides, with slower descent rates featuring more gliding, while ascents were primarily composed of active swimming. The observed swimming behaviour of Atlantic bluefin tuna is consistent with theoretical models predicting such intermittent locomotion to result in mechanical and physiological advantages. Our results confirm that Atlantic bluefin tuna possess behavioural specializations to increase their locomotory performance, which together with their unique physiology improve their capacity to use pelagic and mesopelagic habitats.
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Affiliation(s)
- Adrian C. Gleiss
- Tuna Research and Conservation Centre, Hopkins Marine Station, Stanford University, 120 Oceanview Boulevard, 93950 Pacific Grove, USA
- Centre for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch University, 90 South Street, Murdoch, Western Australia 6150, Australia
- College of Science, Health, Engineering and Education, Environment and Conservation Sciences, Murdoch University, 90 South Street, Murdoch, Western Australia 6150, Australia
| | - Robert J. Schallert
- Tuna Research and Conservation Centre, Hopkins Marine Station, Stanford University, 120 Oceanview Boulevard, 93950 Pacific Grove, USA
| | - Jonathan J. Dale
- Tuna Research and Conservation Centre, Hopkins Marine Station, Stanford University, 120 Oceanview Boulevard, 93950 Pacific Grove, USA
| | - Steve G. Wilson
- Tuna Research and Conservation Centre, Hopkins Marine Station, Stanford University, 120 Oceanview Boulevard, 93950 Pacific Grove, USA
| | - Barbara A. Block
- Tuna Research and Conservation Centre, Hopkins Marine Station, Stanford University, 120 Oceanview Boulevard, 93950 Pacific Grove, USA
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Noda T, Fujioka K, Fukuda H, Mitamura H, Ichikawa K, Arai N. The influence of body size on the intermittent locomotion of a pelagic schooling fish. Proc Biol Sci 2017; 283:rspb.2015.3019. [PMID: 27252017 DOI: 10.1098/rspb.2015.3019] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Accepted: 05/05/2016] [Indexed: 11/12/2022] Open
Abstract
There is a potential trade-off between grouping and the optimizing of the energetic efficiency of individual locomotion. Although intermittent locomotion, e.g. glide and upward swimming (GAU), can reduce the cost of locomotion at the individual level, the link between the optimization of individual intermittent locomotion and the behavioural synchronization in a group, especially among members with different sizes, is unknown. Here, we continuously monitored the schooling behaviour of a negatively buoyant fish, Pacific bluefin tuna (N = 10; 21.0 ∼ 24.5 cm), for 24 h in an open-sea net cage using accelerometry. All the fish repeated GAU during the recording periods. Although the GAU synchrony was maintained at high levels (overall mean = 0.62 for the cross-correlation coefficient of the GAU timings), larger fish glided for a longer duration per glide and more frequently than smaller fish. Similar-sized pairs showed significantly higher GAU synchrony than differently sized pairs. Our accelerometry results and the simulation based on hydrodynamic theory indicated that the advantage of intermittent locomotion in energy savings may not be fully optimized for smaller animals in a group when faced with the maintenance of group cohesion, suggesting that size assortative shoaling would be advantageous.
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Affiliation(s)
- Takuji Noda
- Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan
| | - Ko Fujioka
- National Research Institute of Far Seas Fisheries, FRA, Shizuoka 424-8633, Japan
| | - Hiromu Fukuda
- National Research Institute of Far Seas Fisheries, FRA, Shizuoka 424-8633, Japan
| | | | - Kotaro Ichikawa
- Field Science Education and Research Center, Kyoto University, Kyoto 606-8502, Japan
| | - Nobuaki Arai
- Field Science Education and Research Center, Kyoto University, Kyoto 606-8502, Japan
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Yoshida MA, Yamamoto D, Sato K. Physostomous channel catfish, Ictalurus punctatus, modify swimming mode and buoyancy based on flow conditions. ACTA ACUST UNITED AC 2016; 220:597-606. [PMID: 27908977 DOI: 10.1242/jeb.140202] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Accepted: 11/23/2016] [Indexed: 11/20/2022]
Abstract
The employment of gliding in aquatic animals as a means of conserving energy has been theoretically predicted and discussed for decades. Several studies have shown that some species glide, whereas others do not. Freshwater fish species that widely inhabit both lentic and lotic environments are thought to be able to adapt to fluctuating flow conditions in terms of locomotion. In adapting to the different functional demands of lentic and lotic environments on fish energetics, physostomous (open swim bladder) fish may optimise their locomotion and activity by controlling their net buoyancy; however, few buoyancy studies have been conducted on physostomous fish in the wild. We deployed accelerometers on free-ranging channel catfish, Ictalurus punctatus, in both lentic and lotic environments to quantify their swimming activity, and to determine their buoyancy condition preferences and whether gliding conserves energy. Individual comparisons of swimming efforts between ascent and descent phases revealed that all fish in the lentic environment had negative buoyancy. However, all individuals showed many descents without gliding phases, which was contrary to the behaviour predicted to minimise the cost of transport. The fact that significantly fewer gliding phases were observed in the lotic environment, together with the existence of neutrally buoyant fish, indicated that channel catfish seem to optimise their locomotion through buoyancy control based on flow conditions. The buoyancy optimisation of channel catfish relative to the flow conditions that they inhabit not only reflects differences in swimming behaviour but also provides new insights into the adaptation of physostome fish species to various freshwater environments.
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Affiliation(s)
- Makoto A Yoshida
- Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan
| | - Daisuke Yamamoto
- Toyota Yahagi River Institute, 2-19 Nishimachi, Toyota, Aichi 471-0025, Japan
| | - Katsufumi Sato
- Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan
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Levis NA, Johnson JR. Level of UV-B radiation influences the effects of glyphosate-based herbicide on the spotted salamander. Ecotoxicology 2015; 24:1073-86. [PMID: 25794558 DOI: 10.1007/s10646-015-1448-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 03/11/2015] [Indexed: 06/04/2023]
Abstract
Glyphosate-based herbicides are the number one pesticide in the United States and are used commonly around the world. Understanding the affects of glyphosate-based herbicides on non-target wildlife, for example amphibians, is critical for evaluation of regulations pertaining to the use of such herbicides. Additionally, it is important to understand how variation in biotic and abiotic environmental conditions, such as UV-B light regime, could potentially affect how glyphosate-based herbicides interact with non-target species. This study used artificial pond mesocosms to identify the effects of generic glyphosate-based herbicide (GLY-4 Plus) on mortality, cellular immune response, body size, and morphological plasticity of larvae of the spotted salamander (Ambystoma maculatum) under conditions that reflect moderate (UV(M)) and low (UV(L)) UV-B light regimes. Survival within a given UV-B level was unaffected by herbicide presence or absence. However, when herbicide was present, survival varied between UV-B levels with higher survival in UV(M) conditions. Herbicide presence in the UV(M) treatments also decreased body size and reduced cellular immune response. In the UV(L) treatments, the presence of herbicide increased body size and affected tail morphology. Finally, in the absence of herbicide, body size and cellular immune response were higher in UV(M) treatments compared to UV(L) treatments. Thus, the effects of herbicide on salamander fitness were dependent on UV-B level. As anthropogenic habitat modifications continue to alter landscapes that contain amphibian breeding ponds, salamanders may increasingly find themselves in locations with reduced canopy cover and increased levels of UV light. Our findings suggest that the probability of surviving exposure to the glyphosate-based herbicide used in this study may be elevated in more open canopy ponds, but the effects on other components of fitness may be varied and unexpected.
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Affiliation(s)
- Nicholas A Levis
- Department of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA,
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