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He X, Wang S, Ma C, Xu GR, Ma J, Xie H, Zhu W, Liu H, Wang L, Wang Y. Utilizing Electrochemical Biosensors as an Innovative Platform for the Rapid and On-Site Detection of Animal Viruses. Animals (Basel) 2023; 13:3141. [PMID: 37835747 PMCID: PMC10571726 DOI: 10.3390/ani13193141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 09/19/2023] [Accepted: 10/05/2023] [Indexed: 10/15/2023] Open
Abstract
Animal viruses are a significant threat to animal health and are easily spread across the globe with the rise of globalization. The limitations in diagnosing and treating animal virus infections have made the transmission of diseases and animal deaths unpredictable. Therefore, early diagnosis of animal virus infections is crucial to prevent the spread of diseases and reduce economic losses. To address the need for rapid diagnosis, electrochemical sensors have emerged as promising tools. Electrochemical methods present numerous benefits, including heightened sensitivity and selectivity, affordability, ease of use, portability, and rapid analysis, making them suitable for real-time virus detection. This paper focuses on the construction of electrochemical biosensors, as well as promising biosensor models, and expounds its advantages in virus detection, which is a promising research direction.
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Affiliation(s)
- Xun He
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Shan Wang
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Caoyuan Ma
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Guang-Ri Xu
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Jinyou Ma
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Hongbing Xie
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Wei Zhu
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
| | - Hongyang Liu
- Shuangliao Animal Disease Control Center, Siping 136400, China;
| | - Lei Wang
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
- Ministry of Education Key Laboratory for Animal Pathogens and Biosafety, Zhengzhou 450046, China
| | - Yimin Wang
- Henan Institute of Science and Technology, Xinxiang 453003, China; (X.H.); (S.W.); (C.M.); (G.-R.X.); (J.M.); (H.X.); (W.Z.)
- Ministry of Education Key Laboratory for Animal Pathogens and Biosafety, Zhengzhou 450046, China
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Maroju PA, Ganesan R, Dutta JR. Fluorescence-based simultaneous dual oligo sensing of HCV genotypes 1 and 3 using magnetite nanoparticles. J Photochem Photobiol B 2022; 232:112463. [PMID: 35567883 DOI: 10.1016/j.jphotobiol.2022.112463] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 04/12/2022] [Accepted: 05/05/2022] [Indexed: 12/12/2022]
Abstract
Nucleic acid tests (NATs) have gained an important position in biosensing in the context of the increasing need to meet the stringent requirements for accurate diagnosis of infectious diseases with high sensitivity and selectivity. Recently, the development of new strategies towards multiplex detection of analytes in a single assay is gaining impetus since such an approach would lead to high throughput analysis, leading to substantial benefits in terms of time, infrastructure, labor, and cost. In this work, we demonstrate a facile fluorescence-based simultaneous dual oligo sensing of genotypes 1 and 3 by employing two target sequences (36-mers each) derived from the NS4B and NS5A regions of HCV genome, respectively. A set of 18-mer amine-tagged probes and another set of 18-mer fluorescently-labeled probes that were complementary to each half of the 36-mer target sequences were designed. The amine-tagged probes were immobilized over aldehyde-derivatized magnetite nanoparticles (NPs) via imine bond formation, which was characterized using X-ray photoelectron spectroscopy (XPS) and energy dispersive spectroscopy (EDS) mapping techniques. The successful hybridization between the two probes with their target followed by magnetic removal of the NPs from the solution enabled quantitative analysis of the target by measuring the fluorescence intensity of the residual concentration of the fluorescently-tagged probe. In this manner, the targets corresponding to genotypes 1 and 3 were simultaneously detected with the detection limit in the range of 10-15 nM. The current strategy can potentially be amalgamated with existing nanotechnology-based techniques towards multiplex oligo sensing of several pathogens.
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Babaei A, Pouremamali A, Rafiee N, Sohrabi H, Mokhtarzadeh A, de la Guardia M. Genosensors as an alternative diagnostic sensing approaches for specific detection of various certain viruses: a review of common techniques and outcomes. Trends Analyt Chem 2022; 155:116686. [PMID: 35611316 PMCID: PMC9119280 DOI: 10.1016/j.trac.2022.116686] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 05/08/2022] [Accepted: 05/15/2022] [Indexed: 12/19/2022]
Abstract
Viral infections are responsible for the deaths of millions of people throughout the world. Since outbreak of highly contagious and mutant viruses such as contemporary sars-cov-2 pandemic, has challenged the conventional diagnostic methods, the entity of a thoroughly sensitive, specific, rapid and inexpensive detecting technique with minimum level of false-positivity or -negativity, is desperately needed more than any time in the past decades. Biosensors as minimized devices could detect viruses in simple formats. So far, various nucleic acid, immune- and protein-based biosensors were designed and tested for recognizing the genome, antigen, or protein level of viruses, respectively; however, nucleic acid-based sensing techniques, which is the foundation of constructing genosensors, are preferred not only because of their ultra-sensitivity and applicability in the early stages of infections but also for their ability to differentiate various strains of the same virus. To date, the review articles related to genosensors are just confined to particular pathogenic diseases; In this regard, the present review covers comprehensive information of the research progress of the electrochemical, optical, and surface plasmon resonance (SPR) genosensors that applied for human viruses' diseases detection and also provides a well description of viruses' clinical importance, the conventional diagnosis approaches of viruses and their disadvantages. This review would address the limitations in the current developments as well as the future challenges involved in the successful construction of sensing approaches with the functionalized nanomaterials and also allow exploring into core-research works regarding this area.
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Affiliation(s)
- Abouzar Babaei
- Department of Virology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Amir Pouremamali
- Department of Virology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Nastaran Rafiee
- Department of Virology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Hessamaddin Sohrabi
- Department of Analytical Chemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran
| | - Ahad Mokhtarzadeh
- Immunology Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Miguel de la Guardia
- Department of Analytical Chemistry, University of Valencia, Dr. Moliner 50, 46100, Burjassot, Valencia, Spain
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Leon F, Pinchon E, Mayran C, Daynès A, Morvan F, Molès JP, Cantaloube JF, Fournier-Wirth C. Magnetic Field-Enhanced Agglutination Readout Combined With Isothermal Reverse Transcription Recombinase Polymerase Amplification for Rapid and Sensitive Molecular Detection of Dengue Virus. Front Chem 2022; 9:817246. [PMID: 35141206 PMCID: PMC8819590 DOI: 10.3389/fchem.2021.817246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 12/24/2021] [Indexed: 11/13/2022] Open
Abstract
Among the numerous molecular diagnostic methods, isothermal reverse transcription recombinase polymerase amplification (RT-RPA) is a simple method that has high sensitivity and avoids the use of expensive instruments. However, detection of amplified genomes often requires a fluorescence readout on costly readers or migration on a lateral flow strip with a subjective visual reading. Aiming to establish a new approach to rapidly and sensitively detect viruses, we combined RT-RPA with a magnetic field-enhanced agglutination (MFEA) assay and assessed the ability of this method to detect the dengue virus (DENV). Magnetization cycles accelerated the capture of amplified DENV genomes between functionalized magnetic nanoparticles by a fast chaining process to less than 5 min; the agglutination was quantified by simple turbidimetry. A total of 37 DENV RNA+ and 30 DENV RNA− samples were evaluated with this combined method. The sensitivity and specificity were 89.19% (95% CI, 72.75–100.00%) and 100% (95% CI, 81.74–100.00%), respectively. This approach provides a solution for developing innovative diagnostic assays for the molecular detection of emerging infections.
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Affiliation(s)
- Fanny Leon
- Pathogénèse et Contrôle des Infections Chroniques et Emergentes, Université de Montpellier, Etablissement Français du Sang, Inserm, Université des Antilles, Montpellier, France
| | - Elena Pinchon
- Pathogénèse et Contrôle des Infections Chroniques et Emergentes, Université de Montpellier, Etablissement Français du Sang, Inserm, Université des Antilles, Montpellier, France
| | - Charly Mayran
- Pathogénèse et Contrôle des Infections Chroniques et Emergentes, Université de Montpellier, Etablissement Français du Sang, Inserm, Université des Antilles, Montpellier, France
| | | | - François Morvan
- Institut des Biomolecules Max Mousseron (IBMM), Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Jean-Pierre Molès
- Pathogénèse et Contrôle des Infections Chroniques et Emergentes, Université de Montpellier, Etablissement Français du Sang, Inserm, Université des Antilles, Montpellier, France
| | - Jean-François Cantaloube
- Pathogénèse et Contrôle des Infections Chroniques et Emergentes, Université de Montpellier, Etablissement Français du Sang, Inserm, Université des Antilles, Montpellier, France
| | - Chantal Fournier-Wirth
- Pathogénèse et Contrôle des Infections Chroniques et Emergentes, Université de Montpellier, Etablissement Français du Sang, Inserm, Université des Antilles, Montpellier, France
- *Correspondence: Chantal Fournier-Wirth,
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Mohammed AS, Balapure A, Khan AA, Khaja MN, Ganesan R, Dutta JR. Genotyping simplified: rationally designed antisense oligonucleotide-mediated PCR amplification-free colorimetric sensing of viral RNA in HCV genotypes 1 and 3. Analyst 2021; 146:4767-4774. [PMID: 34231566 DOI: 10.1039/d1an00590a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Molecular diagnosis of viral genotyping devoid of polymerase chain reaction (PCR) amplification in clinical cohorts has hitherto been challenging. Here we present a simplified molecular diagnostic strategy for direct genotyping of hepatitis C virus (HCV) 1 and 3 (prevalent worldwide) using a combination of rationally designed genotype-specific antisense oligonucleotides (ASOs) and plasmonic gold nanoparticles. The ASOs specific to genotypes 1 and 3 have been designed from the nonstructural region 5A (NS5A) of the viral genome using the ClustalW multiple sequence alignment tool. A total of 79 clinical samples including 18 HCV genotype 1, 18 HCV genotype 3, one HIV positive, one HBV positive, and 41 healthy controls have been tested against both the designed ASOs. The study reveals 100% specificity and sensitivity with the employed samples and thereby opens up new avenues for PCR-free direct genotyping of other viruses as well, through the rational design of ASOs.
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Affiliation(s)
- Almas Shamaila Mohammed
- Department of Biological Sciences, BITS Pilani Hyderabad Campus, Jawahar Nagar, Kapra Mandal, Medchal, Hyderabad-500078, India.
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Teengam P, Nisab N, Chuaypen N, Tangkijvanich P, Vilaivan T, Chailapakul O. Fluorescent paper-based DNA sensor using pyrrolidinyl peptide nucleic acids for hepatitis C virus detection. Biosens Bioelectron 2021; 189:113381. [PMID: 34090155 DOI: 10.1016/j.bios.2021.113381] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 05/07/2021] [Accepted: 05/17/2021] [Indexed: 12/17/2022]
Abstract
A novel fluorescent paper-based DNA sensor employing a highly specific pyrrolidinyl peptide nucleic acid (acpcPNA) probe was developed for the sensitive and selective detection of hepatitis C virus (HCV). The acpcPNA was covalently immobilized onto partially oxidized cellulose paper via reductive alkylation between the amine and the aldehyde groups. The fluorescence-based detection was performed by monitoring the fluorescence signal response of a fluorescent dye that selectively binds to the single-strand region of the DNA target over the PNA probe employing a custom-made portable fluorescent camera gadget in combination with a smartphone camera. Under the optimal conditions, a linear relationship between the fluorescence change in the green channel and the amount of HCV DNA from 5 to 100 pmol with a correlation coefficient of 0.9956, and the limit of detection of 5 pmol were obtained for short synthetic oligonucleotides. The acpcPNA probe exhibited very high selectivity for the complementary oligonucleotides over the single-base-mismatched, two-base-mismatched, and non-complementary DNA targets. Benefitting from the signal amplification achieved through the numerous binding sites for the dye provided by the overhanging tail of long ssDNA target sequences, this system was successfully applied to detect the HCV complementary DNA (cDNA) obtained from clinical samples with satisfactory results. The proposed fluorescent paper-based sensor demonstrated a great potential to be used as a low-cost, simple, label-free, sensitive, and selective DNA sensor for point-of-care applications.
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Affiliation(s)
- Prinjaporn Teengam
- Electrochemistry and Optical Spectroscopy Center of Excellence, Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok, 10330, Thailand
| | - Narathorn Nisab
- Electrochemistry and Optical Spectroscopy Center of Excellence, Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok, 10330, Thailand
| | - Natthaya Chuaypen
- Center of Excellence in Hepatitis and Liver Cancer, Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, Pathumwan, Bangkok, 10330, Thailand
| | - Pisit Tangkijvanich
- Center of Excellence in Hepatitis and Liver Cancer, Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, Pathumwan, Bangkok, 10330, Thailand
| | - Tirayut Vilaivan
- Organic Synthesis Research Unit, Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok, 10330, Thailand.
| | - Orawon Chailapakul
- Electrochemistry and Optical Spectroscopy Center of Excellence, Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok, 10330, Thailand.
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Pinchon E, Leon F, Temurok N, Morvan F, Vasseur JJ, Clot M, Foulongne V, Cantaloube JF, Perre PV, Daynès A, Molès JP, Fournier-Wirth C. Rapid and specific DNA detection by magnetic field-enhanced agglutination assay. Talanta 2020; 219:121344. [PMID: 32887073 DOI: 10.1016/j.talanta.2020.121344] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 06/23/2020] [Accepted: 06/25/2020] [Indexed: 12/13/2022]
Abstract
The detection of DNA molecules by agglutination assays has suffered from a lack of specificity. The specificity can be improved by introducing a hybridization step with a specific probe. We developed a setting that captured biotinylated DNA targets between magnetic nanoparticles (MNPs) grafted with tetrathiolated probes and anti-biotin antibodies. The agglutination assay was enhanced using a series of magnetization cycles. This setting allowed to successfully detect a synthetic single stranded DNA with a sensitivity as low as 9 pM. We next adapted this setting to the detection of PCR products. We first developed an asymmetric pan-flavivirus amplification. Then, we demonstrated its ability to detect dengue virus with a limit of detection of 100 TCID50/mL. This magnetic field-enhanced agglutination assay is an endpoint readout, which benefits from the advantages of using nanoparticles that result in particular from a very reduced duration of the test; in our case it lasts less than 5 min. This approach provides a solution to develop new generation platforms for molecular diagnostics.
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Affiliation(s)
- Elena Pinchon
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
| | - Fanny Leon
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
| | - Nevzat Temurok
- HORIBA Medical ABX SAS, Parc Euromedecine, Rue Du Caducée BP 7290, 34184, Montpellier, France.
| | - François Morvan
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, Place Eugène Bataillon, 34095, Montpellier, Cedex 5, France.
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, Place Eugène Bataillon, 34095, Montpellier, Cedex 5, France.
| | - Martine Clot
- HORIBA Medical ABX SAS, Parc Euromedecine, Rue Du Caducée BP 7290, 34184, Montpellier, France.
| | - Vincent Foulongne
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
| | - Jean-François Cantaloube
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
| | - Philippe Vande Perre
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
| | - Aurélien Daynès
- HORIBA Medical ABX SAS, Parc Euromedecine, Rue Du Caducée BP 7290, 34184, Montpellier, France.
| | - Jean-Pierre Molès
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
| | - Chantal Fournier-Wirth
- Pathogénèse et Contrôle des infections chroniques, EFS, Université de Montpellier, Inserm, 60 rue de Navacelles, 34 394 Montpellier, Cedex 5, France.
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Zhang J, Yeromonahos C, Léonard D, Géhin T, Botella C, Grenet G, Benamrouche A, Penuelas J, Monfray S, Chevolot Y, Cloarec JP. Oxidized Titanium Tungsten Surface Functionalization by Silane-, Phosphonic Acid-, or Ortho-dihydroxyaryl-Based Organolayers. Langmuir 2019; 35:9554-9563. [PMID: 31290675 DOI: 10.1021/acs.langmuir.8b04150] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Titanium tungsten (TiW) films (200 nm thick) were cleaned by oxygen plasma, and the resulting oxidized surfaces were functionalized by 3-aminopropylphosphonic acid (APPA), 3-ethoxydimethylsilylpropylamine (APDMES), or dopamine (DA) to form three different organolayers. The three resulting organolayers were characterized by X-ray photoelectron spectroscopy, time-of-flight secondary ion mass spectrometry, and Fourier transform infrared spectroscopy analyses. The stability of each organolayer was investigated. Our results suggested that the Si-O-Ti or Si-O-W bonds formed by the reactions of APDMES with surface-oxidized TiW were rather labile, whereas the catechol layer was less labile. The APPA layer was the most stable of all tested surface modifications.
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Affiliation(s)
- Jian Zhang
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Christelle Yeromonahos
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Didier Léonard
- Univ Lyon, CNRS, Université Claude Bernard Lyon 1, ENS de Lyon, Institut des Sciences Analytiques, UMR 5280 , 5, rue de la Doua , F-69100 Villeurbanne , France
| | - Thomas Géhin
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Claude Botella
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Geneviève Grenet
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Aziz Benamrouche
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - José Penuelas
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Stéphane Monfray
- STMicroelectronics SA , 850, rue Jean Monnet , 38926 Crolles , France
| | - Yann Chevolot
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
| | - Jean-Pierre Cloarec
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL)-UMR CNRS 5270, Ecole Centrale de Lyon , 36 Avenue Guy de Collongue , 69134 Ecully cedex, France
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Leon F, Meyer A, Reynier R, Blanc E, Bruyère-Ostells L, Brès JC, Simonin Y, Salinas S, Gallian P, Leparc-Goffart I, Biron A, Dupont-Rouzeyrol M, Morvan F, Vasseur JJ, Foulongne V, Van de Perre P, Cantaloube JF, Fournier-Wirth C. An Innovative Multiplexed and Flexible Molecular Approach for the Differential Detection of Arboviruses. J Mol Diagn 2019; 21:81-8. [PMID: 30268947 DOI: 10.1016/j.jmoldx.2018.08.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Revised: 07/20/2018] [Accepted: 08/13/2018] [Indexed: 01/23/2023] Open
Abstract
Nucleic acid testing during the preseroconversion viremic phase is required to differentially diagnose arboviral infections. The continuing emergence of arboviruses, such as Zika virus (ZIKV), dengue virus (DENV), and chikungunya virus (CHIKV), necessitates the development of a flexible diagnostic approach. Similar clinical signs and the priority to protect pregnant women from ZIKV infection indicate that the differential diagnosis of arboviruses is essential for effective patient management, clinical care, and epidemiologic surveillance. We describe an innovative diagnostic approach that combines generic RT-PCR amplification and identification by hybridization to specific probes. Original tetrathiolated probes were designed for the robust, sensitive, and specific detection of amplified arboviral genomes. The limit of detection using cultured and quantified stocks of whole viruses was 1 TCID50/mL for DENV-1, DENV-3, and CHIKV and 10 TCID50/mL for DENV-2, DENV-4, and ZIKV. The assay had 100% specificity with no false-positive results. The approach was evaluated using 179 human samples that previously tested as positive for the presence of ZIKV, DENV, or CHIKV genomes. Accordingly, the diagnostic sensitivity for ZIKV, DENV, and CHIKV was 87.88% (n = 58/66), 96.67% (n = 58/60), and 94.34% (n = 50/53), respectively. This method could be easily adapted to include additional molecular targets. Moreover, this approach may also be adapted to develop highly specific, sensitive, and easy to handle platforms dedicated to the multiplex screening and identification of emerging viruses.
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Bonnet R, Farre C, Valera L, Vossier L, Léon F, Dagland T, Pouzet A, Jaffrézic-Renault N, Fareh J, Fournier-Wirth C, Chaix C. Highly labeled methylene blue-ds DNA silica nanoparticles for signal enhancement of immunoassays: application to the sensitive detection of bacteria in human platelet concentrates. Analyst 2018; 143:2293-2303. [DOI: 10.1039/c8an00165k] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A nanoparticle-based electrochemical immunoassay for bacteria detection in platelet concentrates.
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Affiliation(s)
- Romaric Bonnet
- Institut des Sciences Analytiques
- UMR 5280 CNRS-Université Claude Bernard Lyon 1-ENS de Lyon
- Lyon
- France
| | - Carole Farre
- Institut des Sciences Analytiques
- UMR 5280 CNRS-Université Claude Bernard Lyon 1-ENS de Lyon
- Lyon
- France
| | | | - Ludivine Vossier
- UMR 1058 Pathogénèse et Contrôle des Infections Chroniques (PCCI)
- EFS
- Inserm
- Université de Montpellier
- Montpellier
| | - Fanny Léon
- UMR 1058 Pathogénèse et Contrôle des Infections Chroniques (PCCI)
- EFS
- Inserm
- Université de Montpellier
- Montpellier
| | | | - Agnès Pouzet
- Bio-Rad
- R&D Marnes la Coquette & Montpellier
- France
| | - Nicole Jaffrézic-Renault
- Institut des Sciences Analytiques
- UMR 5280 CNRS-Université Claude Bernard Lyon 1-ENS de Lyon
- Lyon
- France
| | | | - Chantal Fournier-Wirth
- UMR 1058 Pathogénèse et Contrôle des Infections Chroniques (PCCI)
- EFS
- Inserm
- Université de Montpellier
- Montpellier
| | - Carole Chaix
- Institut des Sciences Analytiques
- UMR 5280 CNRS-Université Claude Bernard Lyon 1-ENS de Lyon
- Lyon
- France
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Bañuls MJ, Jiménez-Meneses P, Meyer A, Vasseur JJ, Morvan F, Escorihuela J, Puchades R, Maquieira Á. Improved Performance of DNA Microarray Multiplex Hybridization Using Probes Anchored at Several Points by Thiol-Ene or Thiol-Yne Coupling Chemistry. Bioconjug Chem 2017; 28:496-506. [PMID: 28042940 DOI: 10.1021/acs.bioconjchem.6b00624] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Nucleic acid microarray-based assay technology has shown lacks in reproducibility, reliability, and analytical sensitivity. Here, a new strategy of probe attachment modes for silicon-based materials is built up. Thus, hybridization ability is enhanced by combining thiol-ene or thiol-yne click chemistry reactions with a multipoint attachment of polythiolated probes. The viability and performance of this approach was demonstrated by specifically determining Salmonella PCR products up to a 20 pM sensitivity level.
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Affiliation(s)
- Maria-Jose Bañuls
- Interuniversitary Research Institute for Molecular Recognition and Technological Development (IDM), Chemistry Department, Universitat Politècnica de València , Camino de Vera s/n, 46022 Valencia, Spain
| | - Pilar Jiménez-Meneses
- Interuniversitary Research Institute for Molecular Recognition and Technological Development (IDM), Chemistry Department, Universitat Politècnica de València , Camino de Vera s/n, 46022 Valencia, Spain
| | - Albert Meyer
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier , ENSCM, place Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier , ENSCM, place Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - François Morvan
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier , ENSCM, place Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - Jorge Escorihuela
- Interuniversitary Research Institute for Molecular Recognition and Technological Development (IDM), Chemistry Department, Universitat Politècnica de València , Camino de Vera s/n, 46022 Valencia, Spain
| | - Rosa Puchades
- Interuniversitary Research Institute for Molecular Recognition and Technological Development (IDM), Chemistry Department, Universitat Politècnica de València , Camino de Vera s/n, 46022 Valencia, Spain
| | - Ángel Maquieira
- Interuniversitary Research Institute for Molecular Recognition and Technological Development (IDM), Chemistry Department, Universitat Politècnica de València , Camino de Vera s/n, 46022 Valencia, Spain
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Kaniewska K, Kowalczyk A, Karbarz M, Nowicka AM. Changes in the volume phase transition temperature of hydrogels for detection of the DNA hybridization process. Analyst 2016; 141:5815-5821. [PMID: 27508280 DOI: 10.1039/c6an00523c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
A simple biosensing platform which involves the application of thermoresponsive hydrogels (p(NIPA-co-AA)) for detection of target DNA sequences is presented. For this aim the hydrogel based on N-isopropylacrylamide grafted with carboxyl groups was modified with H2N-ssDNA via the amide bond. The detection of target DNA sequences was achieved successfully by monitoring the volume phase transition temperature (VPTT). It was found that the dependence between the VPTT and the concentration of the target complementary DNA is linear in the concentration range from 10-12 to 10-6 M. The proposed DNA detection method is characterized by high sensitivity and good reproducibility. The detection limit obtained (∼1 pM) is a substantial improvement over DNA biosensor labelling with tags, because the detection is based on a physical parameter (VPTT). Circular dichroism (CD) and inductively coupled plasma mass spectrometry with laser ablation (LA-ICP-MS) proved that the hybridization process took place in the hydrogel matrix without any restrictions.
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Affiliation(s)
- Klaudia Kaniewska
- Faculty of Chemistry, University of Warsaw, ul. Pasteura 1, PL-02-093 Warsaw, Poland.
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Leon F, Boutahar N, Meyer A, Bres J, Cantaloube J, Vasseur J, Morvan F, Fournier-wirth C. Nouvelle approche générique de dépistage et de génotypage multiplexe de génomes viraux basée sur l’utilisation de sondes oligonucléotidiques polythiols. Transfus Clin Biol 2015; 22:194-195. [DOI: 10.1016/j.tracli.2015.06.233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Garraud O, Morel P, Coste J, Tiberghien P, Fournier-Wirth C. Transfusion sanguine : un modèle de questionnement en recherche et développement. Presse Med 2015; 44:233-40. [DOI: 10.1016/j.lpm.2014.06.039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Accepted: 06/29/2014] [Indexed: 02/05/2023] Open
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