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Simões TSAN, Filho CINS, Herrmann HJ, Andrade JS, de Arcangelis L. Thermodynamic analog of integrate-and-fire neuronal networks by maximum entropy modelling. Sci Rep 2024; 14:9480. [PMID: 38664504 PMCID: PMC11045794 DOI: 10.1038/s41598-024-60117-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 04/18/2024] [Indexed: 04/28/2024] Open
Abstract
Recent results have evidenced that spontaneous brain activity signals are organized in bursts with scale free features and long-range spatio-temporal correlations. These observations have stimulated a theoretical interpretation of results inspired in critical phenomena. In particular, relying on maximum entropy arguments, certain aspects of time-averaged experimental neuronal data have been recently described using Ising-like models, allowing the study of neuronal networks under an analogous thermodynamical framework. This method has been so far applied to a variety of experimental datasets, but never to a biologically inspired neuronal network with short and long-term plasticity. Here, we apply for the first time the Maximum Entropy method to an Integrate-and-fire (IF) model that can be tuned at criticality, offering a controlled setting for a systematic study of criticality and finite-size effects in spontaneous neuronal activity, as opposed to experiments. We consider generalized Ising Hamiltonians whose local magnetic fields and interaction parameters are assigned according to the average activity of single neurons and correlation functions between neurons of the IF networks in the critical state. We show that these Hamiltonians exhibit a spin glass phase for low temperatures, having mostly negative intrinsic fields and a bimodal distribution of interaction constants that tends to become unimodal for larger networks. Results evidence that the magnetization and the response functions exhibit the expected singular behavior near the critical point. Furthermore, we also found that networks with higher percentage of inhibitory neurons lead to Ising-like systems with reduced thermal fluctuations. Finally, considering only neuronal pairs associated with the largest correlation functions allows the study of larger system sizes.
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Affiliation(s)
- T S A N Simões
- Department of Mathematics and Physics, University of Campania "Luigi Vanvitelli", Viale Lincoln, 5, 81100, Caserta, Italy.
| | - C I N Sampaio Filho
- Departamento de Física, Fortaleza, Universidade Federal do Ceará, Ceará, 60451-970, Brazil
| | - H J Herrmann
- Departamento de Física, Fortaleza, Universidade Federal do Ceará, Ceará, 60451-970, Brazil
- ESPCI, PMMH, Paris, 7 quai St., 75005, Bernard, France
| | - J S Andrade
- Departamento de Física, Fortaleza, Universidade Federal do Ceará, Ceará, 60451-970, Brazil
| | - L de Arcangelis
- Department of Mathematics and Physics, University of Campania "Luigi Vanvitelli", Viale Lincoln, 5, 81100, Caserta, Italy
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Rajan RK, Kumar RP, Ramanathan M. Piceatannol improved cerebral blood flow and attenuated JNK3 and mitochondrial apoptotic pathway in a global ischemic model to produce neuroprotection. Naunyn Schmiedebergs Arch Pharmacol 2024; 397:479-496. [PMID: 37470802 DOI: 10.1007/s00210-023-02616-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Accepted: 07/07/2023] [Indexed: 07/21/2023]
Abstract
Cerebral ischemia is one of the leading causes of death and disability worldwide. The only FDA-approved treatment is recanalization with systemic tissue plasminogen activators like alteplase, although reperfusion caused by recanalization can result in neuroinflammation, which can cause brain cell apoptosis. Therefore, after an ischemic/reperfusion injury, interventions are needed to minimize the neuroinflammatory cascade. In the present study, piceatannol (PCT) was studied for its neuroprotective efficacy in a rat model of global ischemic injury by attenuating c-Jun N-terminal kinase 3 (JNK3) downstream signaling. PCT is a resveratrol analog and a polyphenolic stilbenoid naturally occurring in passion fruit and grapes. The neuroprotective efficacy of PCT (1, 5, 10 mg/kg) in ischemic conditions was assessed through pre- and post-treatment. Cerebral blood flow (CBF) and tests for functional recovery were assessed. Protein and gene expression were done for JNK3 and other inflammatory markers. A docking study was performed to identify the amino acid interaction. The results showed that PCT improved motor and memory function as measured by a functional recovery test believed to be due to an increase in cerebral blood flow. Also, the caspase signaling which promotes apoptosis was found to be down-regulated; however, nitric oxide synthase expression was up-regulated, which could explain the enhanced cerebral blood flow (CBF). According to our findings, PCT impeded c-Jun N-terminal kinase 3 (JNK3) signaling by suppressing phosphorylation and disrupting the mitochondrial apoptotic pathway, which resulted in the neuroprotective effect. Molecular docking analysis was performed to investigate the atomic-level interaction of JNK3 and PCT, which reveals that Met149, Leu206, and Lys93 amino acid residues are critical for the interaction of PCT and JNK3. According to our current research, JNK3 downstream signaling and the mitochondrial apoptosis pathway are both inhibited by PCT, which results in neuroprotection under conditions of global brain ischemia. Piceatannol attenuated JNK3 phosphorylation during the ischemic condition and prevented neuronal apoptosis.
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Affiliation(s)
- Ravi Kumar Rajan
- Department of Pharmacology, PSG College of Pharmacy, Coimbatore, 641004, Tamilnadu, India.
- Department of Pharmacology, Girijananda Chowdhury Institute of Pharmaceutical Science, Girijananda Chowdhury University, Dekargaon, Tezpur, 784501, Assam, India.
| | - Ram Pravin Kumar
- Department of Pharmacology, PSG College of Pharmacy, Coimbatore, 641004, Tamilnadu, India
| | - M Ramanathan
- Department of Pharmacology, PSG College of Pharmacy, Coimbatore, 641004, Tamilnadu, India
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Chicchi L, Cecchini G, Adam I, de Vito G, Livi R, Pavone FS, Silvestri L, Turrini L, Vanzi F, Fanelli D. Reconstruction scheme for excitatory and inhibitory dynamics with quenched disorder: application to zebrafish imaging. J Comput Neurosci 2021; 49:159-174. [PMID: 33826050 PMCID: PMC8046699 DOI: 10.1007/s10827-020-00774-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 12/01/2020] [Accepted: 12/07/2020] [Indexed: 11/30/2022]
Abstract
An inverse procedure is developed and tested to recover functional and structural information from global signals of brains activity. The method assumes a leaky-integrate and fire model with excitatory and inhibitory neurons, coupled via a directed network. Neurons are endowed with a heterogenous current value, which sets their associated dynamical regime. By making use of a heterogenous mean-field approximation, the method seeks to reconstructing from global activity patterns the distribution of in-coming degrees, for both excitatory and inhibitory neurons, as well as the distribution of the assigned currents. The proposed inverse scheme is first validated against synthetic data. Then, time-lapse acquisitions of a zebrafish larva recorded with a two-photon light sheet microscope are used as an input to the reconstruction algorithm. A power law distribution of the in-coming connectivity of the excitatory neurons is found. Local degree distributions are also computed by segmenting the whole brain in sub-regions traced from annotated atlas.
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Affiliation(s)
- Lorenzo Chicchi
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,CSDC, University of Florence, Sesto Fiorentino, Florence, Italy
| | - Gloria Cecchini
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy. .,CSDC, University of Florence, Sesto Fiorentino, Florence, Italy.
| | - Ihusan Adam
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,CSDC, University of Florence, Sesto Fiorentino, Florence, Italy.,Department of Information Engineering, University of Florence, Florence, Italy
| | - Giuseppe de Vito
- European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Florence, Italy.,Department of Neuroscience, Psychology, Drug Research and Child Health, University of Florence, Florence, Italy
| | - Roberto Livi
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,CSDC, University of Florence, Sesto Fiorentino, Florence, Italy.,INFN Sezione di Firenze, Sesto Fiorentino, Florence, Italy
| | - Francesco Saverio Pavone
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Florence, Italy.,National Institute of Optics, National Research Councily, Sesto Fiorentino, Florence, Italy
| | - Ludovico Silvestri
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Florence, Italy.,National Institute of Optics, National Research Councily, Sesto Fiorentino, Florence, Italy
| | - Lapo Turrini
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Florence, Italy
| | - Francesco Vanzi
- European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Florence, Italy.,Department of Biology, University of Florence, Sesto Fiorentino, Florence, Italy
| | - Duccio Fanelli
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Florence, Italy.,CSDC, University of Florence, Sesto Fiorentino, Florence, Italy.,INFN Sezione di Firenze, Sesto Fiorentino, Florence, Italy
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Song SY, Pyo S, Choi S, Oh HS, Seo JH, Yu JH, Baek A, Shin YK, Lee HY, Choi JY, Cho SR. Environmental Enrichment Enhances Ca v 2.1 Channel-Mediated Presynaptic Plasticity in Hypoxic-Ischemic Encephalopathy. Int J Mol Sci 2021; 22:3414. [PMID: 33810296 DOI: 10.3390/ijms22073414] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 03/23/2021] [Indexed: 12/16/2022] Open
Abstract
Hypoxic–ischemic encephalopathy (HIE) is a devastating neonatal brain condition caused by lack of oxygen and limited blood flow. Environmental enrichment (EE) is a classic paradigm with a complex stimulation of physical, cognitive, and social components. EE can exert neuroplasticity and neuroprotective effects in immature brains. However, the exact mechanism of EE on the chronic condition of HIE remains unclear. HIE was induced by a permanent ligation of the right carotid artery, followed by an 8% O2 hypoxic condition for 1 h. At 6 weeks of age, HIE mice were randomly assigned to either standard cages or EE cages. In the behavioral assessments, EE mice showed significantly improved motor performances in rotarod tests, ladder walking tests, and hanging wire tests, compared with HIE control mice. EE mice also significantly enhanced cognitive performances in Y-maze tests. Particularly, EE mice showed a significant increase in Cav 2.1 (P/Q type) and presynaptic proteins by molecular assessments, and a significant increase of Cav 2.1 in histological assessments of the cerebral cortex and hippocampus. These results indicate that EE can upregulate the expression of the Cav 2.1 channel and presynaptic proteins related to the synaptic vesicle cycle and neurotransmitter release, which may be responsible for motor and cognitive improvements in HIE.
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Capogna M, Castillo PE, Maffei A. The ins and outs of inhibitory synaptic plasticity: Neuron types, molecular mechanisms and functional roles. Eur J Neurosci 2020; 54:6882-6901. [PMID: 32663353 DOI: 10.1111/ejn.14907] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 06/30/2020] [Accepted: 07/08/2020] [Indexed: 01/05/2023]
Abstract
GABAergic interneurons are highly diverse, and their synaptic outputs express various forms of plasticity. Compelling evidence indicates that activity-dependent changes of inhibitory synaptic transmission play a significant role in regulating neural circuits critically involved in learning and memory and circuit refinement. Here, we provide an updated overview of inhibitory synaptic plasticity with a focus on the hippocampus and neocortex. To illustrate the diversity of inhibitory interneurons, we discuss the case of two highly divergent interneuron types, parvalbumin-expressing basket cells and neurogliaform cells, which support unique roles on circuit dynamics. We also present recent progress on the molecular mechanisms underlying long-term, activity-dependent plasticity of fast inhibitory transmission. Lastly, we discuss the role of inhibitory synaptic plasticity in neuronal circuits' function. The emerging picture is that inhibitory synaptic transmission in the CNS is extremely diverse, undergoes various mechanistically distinct forms of plasticity and contributes to a much more refined computational role than initially thought. Both the remarkable diversity of inhibitory interneurons and the various forms of plasticity expressed by GABAergic synapses provide an amazingly rich inhibitory repertoire that is central to a variety of complex neural circuit functions, including memory.
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Affiliation(s)
- Marco Capogna
- Department of Biomedicine, Danish National Research Foundation Center of Excellence PROMEMO, Aarhus University, Aarhus, Denmark
| | - Pablo E Castillo
- Dominck P Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, USA.,Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, NY, USA
| | - Arianna Maffei
- Center for Neural Circuit Dynamics and Department of Neurobiology and Behavior, Stony Brook University, Stony Brook, NY, USA
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