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Yu W, Xu N, Huang N, Chen H. Bridging the gap: Geometry-centric discriminative manifold distribution alignment for enhanced classification in colorectal cancer imaging. Comput Biol Med 2024; 170:107998. [PMID: 38266468 DOI: 10.1016/j.compbiomed.2024.107998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/19/2023] [Accepted: 01/13/2024] [Indexed: 01/26/2024]
Abstract
The early detection of colorectal cancer (CRC) through medical image analysis is a pivotal concern in healthcare, with the potential to significantly reduce mortality rates. Current Domain Adaptation (DA) methods strive to mitigate the discrepancies between different imaging modalities that are critical in identifying CRC, yet they often fall short in addressing the complexity of cancer's presentation within these images. These conventional techniques typically overlook the intricate geometrical structures and the local variations within the data, leading to suboptimal diagnostic performance. This study introduces an innovative application of the Discriminative Manifold Distribution Alignment (DMDA) method, which is specifically engineered to enhance the medical image diagnosis of colorectal cancer. DMDA transcends traditional DA approaches by focusing on both local and global distribution alignments and by intricately learning the intrinsic geometrical characteristics present in manifold space. This is achieved without depending on the potentially misleading pseudo-labels, a common pitfall in existing methodologies. Our implementation of DMDA on three distinct datasets, involving several unique DA tasks, has consistently demonstrated superior classification accuracy and computational efficiency. The method adeptly captures the complex morphological and textural nuances of CRC lesions, leading to a significant leap in domain adaptation technology. DMDA's ability to reconcile global and local distributional disparities, coupled with its manifold-based geometrical structure learning, signals a paradigm shift in medical imaging analysis. The results obtained are not only promising in terms of advancing domain adaptation theory but also in their practical implications, offering the prospect of substantially improved diagnostic accuracy and faster clinical workflows. This heralds a transformative approach in personalized oncology care, aligning with the pressing need for early and accurate CRC detection.
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Affiliation(s)
- Weiwei Yu
- Department of Gastroenterology, Wenzhou TCM Hospital of Zhejiang Chinese Medical University, Wenzhou, Zhejiang, 325000, China.
| | - Nuo Xu
- Department of Medical Oncology, Wenzhou TCM Hospital of Zhejiang Chinese Medical University, Wenzhou, Zhejiang, 325000, China.
| | - Nuanhui Huang
- Department of Medical Oncology, Wenzhou TCM Hospital of Zhejiang Chinese Medical University, Wenzhou, Zhejiang, 325000, China.
| | - Houliang Chen
- Department of Medical Oncology, Wenzhou TCM Hospital of Zhejiang Chinese Medical University, Wenzhou, Zhejiang, 325000, China.
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Zhang Y, Gao Y, Xu J, Zhao G, Shi L, Kong L. Unsupervised Joint Domain Adaptation for Decoding Brain Cognitive States From tfMRI Images. IEEE J Biomed Health Inform 2024; 28:1494-1503. [PMID: 38157464 DOI: 10.1109/jbhi.2023.3348130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2024]
Abstract
Recent advances in large model and neuroscience have enabled exploration of the mechanism of brain activity by using neuroimaging data. Brain decoding is one of the most promising researches to further understand the human cognitive function. However, current methods excessively depends on high-quality labeled data, which brings enormous expense of collection and annotation of neural images by experts. Besides, the performance of cross-individual decoding suffers from inconsistency in data distribution caused by individual variation and different collection equipments. To address mentioned above issues, a Join Domain Adapative Decoding (JDAD) framework is proposed for unsupervised decoding specific brain cognitive state related to behavioral task. Based on the volumetric feature extraction from task-based functional Magnetic Resonance Imaging (tfMRI) data, a novel objective loss function is designed by the combination of joint distribution regularizer, which aims to restrict the distance of both the conditional and marginal probability distribution of labeled and unlabeled samples. Experimental results on the public Human Connectome Project (HCP) S1200 dataset show that JDAD achieves superior performance than other prevalent methods, especially for fine-grained task with 11.5%-21.6% improvements of decoding accuracy. The learned 3D features are visualized by Grad-CAM to build a combination with brain functional regions, which provides a novel path to learn the function of brain cortex regions related to specific cognitive task in group level.
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Ren CX, Luo YW, Dai DQ. BuresNet: Conditional Bures Metric for Transferable Representation Learning. IEEE Trans Pattern Anal Mach Intell 2023; 45:4198-4213. [PMID: 35830411 DOI: 10.1109/tpami.2022.3190645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
As a fundamental manner for learning and cognition, transfer learning has attracted widespread attention in recent years. Typical transfer learning tasks include unsupervised domain adaptation (UDA) and few-shot learning (FSL), which both attempt to sufficiently transfer discriminative knowledge from the training environment to the test environment to improve the model's generalization performance. Previous transfer learning methods usually ignore the potential conditional distribution shift between environments. This leads to the discriminability degradation in the test environments. Therefore, how to construct a learnable and interpretable metric to measure and then reduce the gap between conditional distributions is very important in the literature. In this article, we design the Conditional Kernel Bures (CKB) metric for characterizing conditional distribution discrepancy, and derive an empirical estimation with convergence guarantee. CKB provides a statistical and interpretable approach, under the optimal transportation framework, to understand the knowledge transfer mechanism. It is essentially an extension of optimal transportation from the marginal distributions to the conditional distributions. CKB can be used as a plug-and-play module and placed onto the loss layer in deep networks, thus, it plays the bottleneck role in representation learning. From this perspective, the new method with network architecture is abbreviated as BuresNet, and it can be used extract conditional invariant features for both UDA and FSL tasks. BuresNet can be trained in an end-to-end manner. Extensive experiment results on several benchmark datasets validate the effectiveness of BuresNet.
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Xia H, Jing T, Ding Z. Maximum Structural Generation Discrepancy for Unsupervised Domain Adaptation. IEEE Trans Pattern Anal Mach Intell 2023; 45:3434-3445. [PMID: 35544511 DOI: 10.1109/tpami.2022.3174526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Unsupervised domain adaptation (UDA) has recently become an appealing research topic in visual recognition, since it exploits all accessible well-labeled source data to train a model with high generalization on target domain without any annotations. However, due to the significant domain discrepancy, the bottleneck for UDA is to learn effective domain-invariant feature representations. To fight off such an obstacle, we propose a novel cross-domain learning framework named Maximum Structural Generation Discrepancy (MSGD) to accurately estimate and mitigate domain shift via introducing an intermediate domain. First, the cross-domain topological structure is explored to propagate target samples to generate a novel intermediate domain paired with the specific source instances. The intermediate domain plays as the bridge to gradually reduce distribution divergence across source and target domains. Concretely, the similar category semantic across source and intermediate features tends to naturally conduct the class-level alignment on eliminating their domain shift. In terms of no target annotation, the domain-level alignment manner is suitable to narrow down the distance between intermediate and target domains. Moreover, to produce high-quality generative instances, we develop the class-driven collaborative translation (CDCT) module to generate class-consistent cross-domain samples in each mini-batch with the assistance of pseudo-labels. Extensive experimental analyses on five domain adaptation benchmarks demonstrate the effectiveness of our MSGD on solving UDA problem.
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Zhang T, Gao Z, Liu Z, Hussain SF, Waqas M, Halim Z, Li Y. Infrared ship target segmentation based on Adversarial Domain Adaptation. Knowl Based Syst 2023. [DOI: 10.1016/j.knosys.2023.110344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
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Huang Z, Wen J, Chen S, Zhu L, Zheng N. Discriminative Radial Domain Adaptation. IEEE Trans Image Process 2023; PP:1419-1431. [PMID: 37018670 DOI: 10.1109/tip.2023.3235583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Domain adaptation methods reduce domain shift typically by learning domain-invariant features. Most existing methods are built on distribution matching, e.g., adversarial domain adaptation, which tends to corrupt feature discriminability. In this paper, we propose Discriminative Radial Domain Adaptation (DRDR) which bridges source and target domains via a shared radial structure. It's motivated by the observation that as the model is trained to be progressively discriminative, features of different categories expand outwards in different directions, forming a radial structure. We show that transferring such an inherently discriminative structure would enable to enhance feature transferability and discriminability simultaneously. Specifically, we represent each domain with a global anchor and each category a local anchor to form a radial structure and reduce domain shift via structure matching. It consists of two parts, namely isometric transformation to align the structure globally and local refinement to match each category. To enhance the discriminability of the structure, we further encourage samples to cluster close to the corresponding local anchors based on optimal-transport assignment. Extensively experimenting on multiple benchmarks, our method is shown to consistently outperforms state-of-the-art approaches on varied tasks, including the typical unsupervised domain adaptation, multi-source domain adaptation, domain-agnostic learning, and domain generalization.
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Yang L, Lu B, Zhou Q, Su P. Unsupervised domain adaptation via re-weighted transfer subspace learning with inter-class sparsity. Knowl Based Syst 2023. [DOI: 10.1016/j.knosys.2023.110277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Xu GX, Ren CX. SPNet: A novel deep neural network for retinal vessel segmentation based on shared decoder and pyramid-like loss. Neurocomputing 2022. [DOI: 10.1016/j.neucom.2022.12.039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Li P, Ni Z, Zhu X, Song J. Distribution matching and structure preservation for domain adaptation. COMPLEX INTELL SYST. [DOI: 10.1007/s40747-022-00887-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
AbstractCross-domain classification refers to completing the corresponding classification task in a target domain which lacks label information, by exploring useful knowledge in a related source domain but with different data distribution. Domain adaptation can deal with such cross-domain classification, by reducing divergence of domains and transferring the relevant knowledge from the source to the target. To mine the discriminant information of the source domain samples and the geometric structure information of domains, and thus improve domain adaptation performance, this paper proposes a novel method involving distribution matching and structure preservation for domain adaptation (DMSP). First, it aligns the subspaces of the source domain and target domain on the Grassmann manifold; and learns the non-distorted embedded feature representations of the two domains. Second, in this embedded feature space, the empirical structure risk minimization method with distribution adaptation regularization and intra-domain graph regularization is used to learn an adaptive classifier, further adapting the source and target domains. Finally, we perform extensive experiments on widely used cross-domain classification datasets to validate the superiority of DMSP. The average classification accuracy of DMSP on these datasets is the highest compared with several state-of-the-art domain adaptation methods.
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Cheng J, Liu L, Liu B, Zhou K, Da Q, Yang Y. Foreground object structure transfer for unsupervised domain adaptation. INT J INTELL SYST 2022. [DOI: 10.1002/int.22976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Jieren Cheng
- School of Computer Science and Technology Hainan University Haikou China
- Hainan Blockchain Technology Engineering Research Center Haikou China
| | - Le Liu
- School of Computer Science and Technology Hainan University Haikou China
| | - Boyi Liu
- Guangdong‐Hong Kong‐Macao Joint Laboratory of Human‐Machine Intelligence‐Synergy Systems The Hong Kong University of Science and Technology Hong Kong China
| | - Ke Zhou
- School of Cyberspace Security Hainan University Haikou China
| | - Qiaobo Da
- School of Cyberspace Security Hainan University Haikou China
| | - Yue Yang
- School of Cyberspace Security Hainan University Haikou China
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Abstract
The world we see is ever-changing and it always changes with people, things, and the environment. Domain is referred to as the state of the world at a certain moment. A research problem is characterized as transfer adaptation learning (TAL) when it needs knowledge correspondence between different moments/domains. TAL aims to build models that can perform tasks of target domain by learning knowledge from a semantic-related but distribution different source domain. It is an energetic research field of increasing influence and importance, which is presenting a blowout publication trend. This article surveys the advances of TAL methodologies in the past decade, and the technical challenges and essential problems of TAL have been observed and discussed with deep insights and new perspectives. Broader solutions of TAL being created by researchers are identified, i.e., instance reweighting adaptation, feature adaptation, classifier adaptation, deep network adaptation, and adversarial adaptation, which are beyond the early semisupervised and unsupervised split. The survey helps researchers rapidly but comprehensively understand and identify the research foundation, research status, theoretical limitations, future challenges, and understudied issues (universality, interpretability, and credibility) to be broken in the field toward generalizable representation in open-world scenarios.
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Tian L, Tang Y, Zhang W. Partial Domain Adaptation by Progressive Sample Learning of Shared Classes. Neural Process Lett. [DOI: 10.1007/s11063-022-10828-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Ren CX, Liu YH, Zhang XW, Huang KK. Multi-Source Unsupervised Domain Adaptation via Pseudo Target Domain. IEEE Trans Image Process 2022; 31:2122-2135. [PMID: 35196236 DOI: 10.1109/tip.2022.3152052] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Multi-source domain adaptation (MDA) aims to transfer knowledge from multiple source domains to an unlabeled target domain. MDA is a challenging task due to the severe domain shift, which not only exists between target and source but also exists among diverse sources. Prior studies on MDA either estimate a mixed distribution of source domains or combine multiple single-source models, but few of them delve into the relevant information among diverse source domains. For this reason, we propose a novel MDA approach, termed Pseudo Target for MDA (PTMDA). Specifically, PTMDA maps each group of source and target domains into a group-specific subspace using adversarial learning with a metric constraint, and constructs a series of pseudo target domains correspondingly. Then we align the remainder source domains with the pseudo target domain in the subspace efficiently, which allows to exploit additional structured source information through the training on pseudo target domain and improves the performance on the real target domain. Besides, to improve the transferability of deep neural networks (DNNs), we replace the traditional batch normalization layer with an effective matching normalization layer, which enforces alignments in latent layers of DNNs and thus gains further promotion. We give theoretical analysis showing that PTMDA as a whole can reduce the target error bound and leads to a better approximation of the target risk in MDA settings. Extensive experiments demonstrate PTMDA's effectiveness on MDA tasks, as it outperforms state-of-the-art methods in most experimental settings.
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Xu GX, Liu C, Liu J, Ding Z, Shi F, Guo M, Zhao W, Li X, Wei Y, Gao Y, Ren CX, Shen D. Cross-Site Severity Assessment of COVID-19 From CT Images via Domain Adaptation. IEEE Trans Med Imaging 2022; 41:88-102. [PMID: 34383647 PMCID: PMC8905616 DOI: 10.1109/tmi.2021.3104474] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 07/26/2021] [Accepted: 08/08/2021] [Indexed: 06/13/2023]
Abstract
Early and accurate severity assessment of Coronavirus disease 2019 (COVID-19) based on computed tomography (CT) images offers a great help to the estimation of intensive care unit event and the clinical decision of treatment planning. To augment the labeled data and improve the generalization ability of the classification model, it is necessary to aggregate data from multiple sites. This task faces several challenges including class imbalance between mild and severe infections, domain distribution discrepancy between sites, and presence of heterogeneous features. In this paper, we propose a novel domain adaptation (DA) method with two components to address these problems. The first component is a stochastic class-balanced boosting sampling strategy that overcomes the imbalanced learning problem and improves the classification performance on poorly-predicted classes. The second component is a representation learning that guarantees three properties: 1) domain-transferability by prototype triplet loss, 2) discriminant by conditional maximum mean discrepancy loss, and 3) completeness by multi-view reconstruction loss. Particularly, we propose a domain translator and align the heterogeneous data to the estimated class prototypes (i.e., class centers) in a hyper-sphere manifold. Experiments on cross-site severity assessment of COVID-19 from CT images show that the proposed method can effectively tackle the imbalanced learning problem and outperform recent DA approaches.
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Affiliation(s)
- Geng-Xin Xu
- School of MathematicsSun Yat-sen UniversityGuangzhou510275China
| | - Chen Liu
- Department of RadiologySouthwest HospitalThird Military Medical University (Army Medical University)Chongqing400038China
| | - Jun Liu
- Department of RadiologyThe Second Xiangya HospitalCentral South UniversityChangsha410011China
- Department of Radiology Quality Control CenterChangshaHunan410011China
| | - Zhongxiang Ding
- Department of RadiologyHangzhou First People’s HospitalZhejiang University School of MedicineHangzhou310027China
| | - Feng Shi
- Department of Research and DevelopmentShanghai United Imaging Intelligence Company Ltd.Shanghai200232China
| | - Man Guo
- Department of RadiologySouthwest HospitalThird Military Medical University (Army Medical University)Chongqing400038China
| | - Wei Zhao
- Department of RadiologyThe Second Xiangya HospitalCentral South UniversityChangsha410011China
| | - Xiaoming Li
- Department of RadiologySouthwest HospitalThird Military Medical University (Army Medical University)Chongqing400038China
| | - Ying Wei
- Department of Research and DevelopmentShanghai United Imaging Intelligence Company Ltd.Shanghai200232China
| | - Yaozong Gao
- Department of Research and DevelopmentShanghai United Imaging Intelligence Company Ltd.Shanghai200232China
| | - Chuan-Xian Ren
- School of MathematicsSun Yat-sen UniversityGuangzhou510275China
- Pazhou LabGuangzhou510330China
- Key Laboratory of Machine Intelligence and Advanced Computing (Sun Yat-sen University) Ministry of EducationGuangzhou510275China
| | - Dinggang Shen
- Department of Research and DevelopmentShanghai United Imaging Intelligence Company Ltd.Shanghai200232China
- School of Biomedical EngineeringShanghaiTech UniversityShanghai201210China
- Department of Artificial IntelligenceKorea UniversitySeoul02841Republic of Korea
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