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Acosta N, Bautista MA, Hollman J, McCalder J, Beaudet AB, Man L, Waddell BJ, Chen J, Li C, Kuzma D, Bhatnagar S, Leal J, Meddings J, Hu J, Cabaj JL, Ruecker NJ, Naugler C, Pillai DR, Achari G, Ryan MC, Conly JM, Frankowski K, Hubert CR, Parkins MD. A multicenter study investigating SARS-CoV-2 in tertiary-care hospital wastewater. viral burden correlates with increasing hospitalized cases as well as hospital-associated transmissions and outbreaks. Water Res 2021; 201:117369. [PMID: 34229222 PMCID: PMC8214445 DOI: 10.1016/j.watres.2021.117369] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 06/07/2021] [Accepted: 06/12/2021] [Indexed: 05/18/2023]
Abstract
SARS-CoV-2 has been detected in wastewater and its abundance correlated with community COVID-19 cases, hospitalizations and deaths. We sought to use wastewater-based detection of SARS-CoV-2 to assess the epidemiology of SARS-CoV-2 in hospitals. Between August and December 2020, twice-weekly wastewater samples from three tertiary-care hospitals (totaling > 2100 dedicated inpatient beds) were collected. Hospital-1 and Hospital-2 could be captured with a single sampling point whereas Hospital-3 required three separate monitoring sites. Wastewater samples were concentrated and cleaned using the 4S-silica column method and assessed for SARS-CoV-2 gene-targets (N1, N2 and E) and controls using RT-qPCR. Wastewater SARS-CoV-2 as measured by quantification cycle (Cq), genome copies and genomes normalized to the fecal biomarker PMMoV were compared to the total daily number of patients hospitalized with active COVID-19, confirmed cases of hospital-acquired infection, and the occurrence of unit-specific outbreaks. Of 165 wastewater samples collected, 159 (96%) were assayable. The N1-gene from SARS-CoV-2 was detected in 64.1% of samples, N2 in 49.7% and E in 10%. N1 and N2 in wastewater increased over time both in terms of the amount of detectable virus and the proportion of samples that were positive, consistent with increasing hospitalizations at those sites with single monitoring points (Pearson's r = 0.679, P < 0.0001, Pearson's r = 0.799, P < 0.0001, respectively). Despite increasing hospitalizations through the study period, nosocomial-acquired cases of COVID-19 (Pearson's r = 0.389, P < 0.001) and unit-specific outbreaks were discernable with significant increases in detectable SARS-CoV-2 N1-RNA (median 112 copies/ml) versus outbreak-free periods (0 copies/ml; P < 0.0001). Wastewater-based monitoring of SARS-CoV-2 represents a promising tool for SARS-CoV-2 passive surveillance and case identification, containment, and mitigation in acute- care medical facilities.
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Affiliation(s)
- Nicole Acosta
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation
| | - María A Bautista
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Jordan Hollman
- Department of Geosciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation; Department of Civil Engineering, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Janine McCalder
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation; Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Alexander Buchner Beaudet
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Lawrence Man
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Barbara J Waddell
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation
| | - Jianwei Chen
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Carmen Li
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Darina Kuzma
- Advancing Canadian Wastewater Assets, University of Calgary, 3131 210 Ave SE, Calgary, Alberta, Abbreviation
| | - Srijak Bhatnagar
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Jenine Leal
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation; Infection Prevention and Control, Alberta Health Services, 1403 29th Street NW, Calgary, Alberta, Abbreviation; Department of Community Health Sciences, University of Calgary, 3280 Hospital Drive NW, Calgary, Alberta, Abbreviation; O'Brien Institute for Public Health, University of Calgary, 3280 Hospital Dr NW, Calgary, Alberta, Abbreviation
| | - Jon Meddings
- Department of Medicine, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation
| | - Jia Hu
- Department of Community Health Sciences, University of Calgary, 3280 Hospital Drive NW, Calgary, Alberta, Abbreviation; Provincial Population & Public Health, Alberta Health Services, 3030 Hospital Drive NW, Calgary, Alberta, Abbreviation; O'Brien Institute for Public Health, University of Calgary, 3280 Hospital Dr NW, Calgary, Alberta, Abbreviation
| | - Jason L Cabaj
- Department of Community Health Sciences, University of Calgary, 3280 Hospital Drive NW, Calgary, Alberta, Abbreviation; O'Brien Institute for Public Health, University of Calgary, 3280 Hospital Dr NW, Calgary, Alberta, Abbreviation
| | - Norma J Ruecker
- Water Quality Services, City of Calgary, 625 25 Ave SE, Calgary, Alberta, Abbreviation
| | - Christopher Naugler
- Department of Community Health Sciences, University of Calgary, 3280 Hospital Drive NW, Calgary, Alberta, Abbreviation; Department of Pathology and Laboratory Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation
| | - Dylan R Pillai
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation; Department of Pathology and Laboratory Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation; Alberta Precision Laboratories, Alberta Health Services, 3535 Research Rd NW, Calgary, Alberta, Abbreviation
| | - Gopal Achari
- Department of Civil Engineering, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - M Cathryn Ryan
- Department of Geosciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - John M Conly
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation; Infection Prevention and Control, Alberta Health Services, 1403 29th Street NW, Calgary, Alberta, Abbreviation; Department of Medicine, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation; O'Brien Institute for Public Health, University of Calgary, 3280 Hospital Dr NW, Calgary, Alberta, Abbreviation; Department of Pathology and Laboratory Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation; Snyder Institute for Chronic Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation
| | - Kevin Frankowski
- Advancing Canadian Wastewater Assets, University of Calgary, 3131 210 Ave SE, Calgary, Alberta, Abbreviation
| | - Casey Rj Hubert
- Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Abbreviation
| | - Michael D Parkins
- Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, AB, Abbreviation; Department of Medicine, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation; Snyder Institute for Chronic Diseases, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Abbreviation.
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