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Sun J, Hong H, Zhu N, Han L, Suo Q. Effect of preparation methods on tosufloxacin tosylate/ hydroxypropyl-β-cyclodextrin inclusion complex. BRAZ J PHARM SCI 2022. [DOI: 10.1590/s2175-97902022e18650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Affiliation(s)
- Jianfei Sun
- Inner Mongolia University of Technology, China; Inner Mongolia Engineering Research Center for CO Capture and Utilization, China
| | - Hailong Hong
- Inner Mongolia University of Technology, China; Inner Mongolia Engineering Research Center for CO Capture and Utilization, China
| | - Ning Zhu
- Inner Mongolia University of Technology, China; Inner Mongolia Engineering Research Center for CO Capture and Utilization, China
| | - Limin Han
- Inner Mongolia University of Technology, China
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Sandilya A, Natarajan U, Priya MH. Molecular View into the Cyclodextrin Cavity: Structure and Hydration. ACS Omega 2020; 5:25655-25667. [PMID: 33073091 PMCID: PMC7557249 DOI: 10.1021/acsomega.0c02760] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 08/14/2020] [Indexed: 05/21/2023]
Abstract
We find, through atomistic molecular dynamics simulation of native cyclodextrins (CDs) in water, that although the outer surface of a CD appears like a truncated cone, the inner cavity resembles a conical hourglass because of the inward protrusion of the glycosidic oxygens. Furthermore, the conformations of the constituent α-glucose molecules are found to differ significantly from a free monomeric α-glucose molecule. This is the first computational study that maps the conformational change to the preferential hydrogen bond donating capacity of one of the secondary hydroxyl groups of CD, in consensus with an NMR experiment. We have developed a simple and novel geometry-based technique to identify water molecules occupying the nonspherical CD cavity, and the computed water occupancies are in close agreement with the experimental and density functional theory studies. Our analysis reveals that a water molecule in CD cavity loses out about two hydrogen bonds and remains energetically frustrated but possesses higher orientational degree of freedom compared to bulk water. In the context of CD-drug complexation, these imply a nonclassical, that is, enthalpically driven hydrophobic association of a drug in CD cavity.
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Affiliation(s)
- Avilasha
A. Sandilya
- Department
of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600036, India
| | - Upendra Natarajan
- Department
of Chemical Engineering, Indian Institute
of Technology Madras, Chennai 600036, India
| | - M. Hamsa Priya
- Department
of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600036, India
- . Phone: +91-44-22574132
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Biedermann F, Nau WM, Schneider HJ. Neues zum hydrophoben Effekt - Studien mit supramolekularen Komplexen zeigen hochenergetisches Wasser als nichtkovalente Bindungstriebkraft. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201310958] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Biedermann F, Nau WM, Schneider HJ. The hydrophobic effect revisited--studies with supramolecular complexes imply high-energy water as a noncovalent driving force. Angew Chem Int Ed Engl 2014; 53:11158-71. [PMID: 25070083 DOI: 10.1002/anie.201310958] [Citation(s) in RCA: 415] [Impact Index Per Article: 41.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Indexed: 01/14/2023]
Abstract
Traditional descriptions of the hydrophobic effect on the basis of entropic arguments or the calculation of solvent-occupied surfaces must be questioned in view of new results obtained with supramolecular complexes. In these studies, it was possible to separate hydrophobic from dispersive interactions, which are strongest in aqueous systems. Even very hydrophobic alkanes associate significantly only in cavities containing water molecules with an insufficient number of possible hydrogen bonds. The replacement of high-energy water in cavities by guest molecules is the essential enthalpic driving force for complexation, as borne out by data for complexes of cyclodextrins, cyclophanes, and cucurbiturils, for which complexation enthalpies of up to -100 kJ mol(-1) were reached for encapsulated alkyl residues. Water-box simulations were used to characterize the different contributions from high-energy water and enabled the calculation of the association free enthalpies for selected cucurbituril complexes to within a 10% deviation from experimental values. Cavities in artificial receptors are more apt to show the enthalpic effect of high-energy water than those in proteins or nucleic acids, because they bear fewer or no functional groups in the inner cavity to stabilize interior water molecules.
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Affiliation(s)
- Frank Biedermann
- ISIS-Institut de Science et d'Ingénierie Supramoléculaires, 67083 Strasbourg (France).
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Brocos P, Banquy X, Díaz-Vergara N, Pérez-Casas S, Piñeiro Á, Costas M. A Critical Approach to the Thermodynamic Characterization of Inclusion Complexes: Multiple-Temperature Isothermal Titration Calorimetric Studies of Native Cyclodextrins with Sodium Dodecyl Sulfate. J Phys Chem B 2011; 115:14381-96. [DOI: 10.1021/jp208740b] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Pilar Brocos
- Departamento de Física Aplicada, Facultad de Física, Universidad de Santiago de Compostela, Campus Vida, E-15782 Santiago de Compostela, Spain
| | - Xavier Banquy
- Laboratorio de Biofisicoquímica, Departamento de Fisicoquímica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, México D.F. 04510, Mexico
| | - Norma Díaz-Vergara
- Laboratorio de Biofisicoquímica, Departamento de Fisicoquímica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, México D.F. 04510, Mexico
| | - Silvia Pérez-Casas
- Laboratorio de Biofisicoquímica, Departamento de Fisicoquímica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, México D.F. 04510, Mexico
| | - Ángel Piñeiro
- Departamento de Física Aplicada, Facultad de Física, Universidad de Santiago de Compostela, Campus Vida, E-15782 Santiago de Compostela, Spain
- Laboratorio de Biofisicoquímica, Departamento de Fisicoquímica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, México D.F. 04510, Mexico
| | - Miguel Costas
- Laboratorio de Biofisicoquímica, Departamento de Fisicoquímica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, México D.F. 04510, Mexico
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Abstract
Atomistic molecular dynamics (MD) simulations of α-, β-, and γ-cyclodextrins (ACD, BCD, and GCD) in aqueous solutions have been performed. Detailed analyses were carried out to compare the microscopic properties of water confined within the cavities of these macromolecules and in the hydration layers around them. It is noticed that reduced tetrahedral ordering of water in and around the CD molecules are associated with their restricted motions. Interestingly, unlike the translational motions, the rotational motions of cavity water molecules are found to be highly dependent on cavity dimensions. Additionally, it is found that severely hindered rotational motion of cavity water molecules is the origin of drastically restricted structural relaxation of hydrogen bonds involving those water molecules. It is demonstrated that the geometrical constraints within the cavities of the CD molecules enhance the rate of reformation of broken hydrogen bonds, thereby resulting in rapid establishment of the breaking and reformation equilibria for hydrogen bonds involving cavity water molecules.
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Affiliation(s)
- Madhurima Jana
- Molecular Modeling Laboratory, Department of Chemistry, Indian Institute of Technology, Kharagpur - 721302, India
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Naidoo KJ, Gamieldien MR, Chen JYJ, Widmalm G, Maliniak A. Glucose Orientation and Dynamics in α-, β-, and γ-Cyclodextrins. J Phys Chem B 2008; 112:15151-7. [DOI: 10.1021/jp805174y] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kevin J. Naidoo
- Department of Chemistry, University of Cape Town, Rondebosch, 7701, South Africa., Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden., Division of Physical Chemistry Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
| | - M. Riedaa Gamieldien
- Department of Chemistry, University of Cape Town, Rondebosch, 7701, South Africa., Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden., Division of Physical Chemistry Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
| | - Jeff Yu-Jen Chen
- Department of Chemistry, University of Cape Town, Rondebosch, 7701, South Africa., Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden., Division of Physical Chemistry Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
| | - Göran Widmalm
- Department of Chemistry, University of Cape Town, Rondebosch, 7701, South Africa., Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden., Division of Physical Chemistry Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
| | - Arnold Maliniak
- Department of Chemistry, University of Cape Town, Rondebosch, 7701, South Africa., Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden., Division of Physical Chemistry Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
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