|
1
|
Behera BK, Rout AK, Baisvar VS, Paria P, Singh NS, Ghadei SS, Jana AK, Parida PK, Das BK. The complete mitochondrial genome sequence of Osteobrama belangeri (Cyprinidae) and its comparison with other related Cypriniformes fish species. Mitochondrial DNA B Resour 2019; 4:2330-2331. [PMID: 33365529 PMCID: PMC7687656 DOI: 10.1080/23802359.2019.1624206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 05/17/2019] [Indexed: 11/25/2022] Open
Abstract
The complete mitogenome of Osteobrama belangeri is described using Ion Torrent (PGM sequencer), which was 16,609 bp in size comprising 13 mRNAs, teo rRNA genes, 22 tRNAs, and 926 bp as D-Loop control region, in addition to gene order and organization, being similar to most of the other related Cypriniformes fish mitogenome of NCBI databases. The all 22 tRNAs were packed into a typical clover-leaf structure. In the present study, the mitogenome has 99% similarity to the complete mitogenome sequence of O. belangeri mitogenome details previously and also would be helpful in understanding the phylogenetics, population genetics, and evolution of family Cyprinidae fishes.
Collapse
Affiliation(s)
- Bijay Kumar Behera
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| | - Ajaya Kumar Rout
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| | | | - Prasenjit Paria
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| | | | - Sanjeev Sen Ghadei
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| | - Asim Kumar Jana
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| | - Pranaya Kumar Parida
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| | - Basanta Kumar Das
- Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute, Kolkata, India
| |
Collapse
|
|
2
|
Zhu K, Gong L, Jiang L, Liu L, Lü Z, Liu BJ. Phylogenetic analysis of the complete mitochondrial genome of Anguilla japonica (Anguilliformes, Anguillidae). Mitochondrial DNA B Resour 2018; 3:536-537. [PMID: 33474232 PMCID: PMC7799773 DOI: 10.1080/23802359.2018.1467225] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Accepted: 04/16/2018] [Indexed: 11/03/2022] Open
Abstract
The Japanese eel (Anguilla japonica), which was listed as Endangered (EN) under the International Union for the Conservation of Nature due to the declines in its abundance, overfishing, and its narrow range distribution. To better protect this species, we described the complete mitogenome of A. japonica in this study. The mitogenome is 16717bp in length and contains 13PCGs, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and a putative control region (CR) and one origin of replication on the light-strand (OL). Moreover, the 13 PCGs encode 3813 amino acids in total, all the protein-coding genes use the initiation codon ATG except COI uses GTG. Most of them have TAA or TAG as the stop codon, except COI uses AGG and two PCGs (COII and ND4) use an incomplete stop codon T. A phylogenetic tree based on the Neighbour Joining method was constructed to provide relationship within Anguilla, which could be a useful basis for conservation of this species.
Collapse
Affiliation(s)
- Kehua Zhu
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National engineering research center for facilitated marine aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National engineering research center for facilitated marine aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Lihua Jiang
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National engineering research center for facilitated marine aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National engineering research center for facilitated marine aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National engineering research center for facilitated marine aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Bing-jian Liu
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National engineering research center for facilitated marine aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| |
Collapse
|