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Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, Kuehner K, Ogedengbe O, Morey R, Gager J, Kruk K, Perlman E, Yang R, Deutsch D, Bland D, Sorek M, Lu R, Macrina T, Lee K, Bae JA, Mu S, Nehoran B, Mitchell E, Popovych S, Wu J, Jia Z, Castro M, Kemnitz N, Ih D, Bates AS, Eckstein N, Funke J, Collman F, Bock DD, Jefferis GS, Seung HS, Murthy M. Neuronal wiring diagram of an adult brain. bioRxiv 2023:2023.06.27.546656. [PMID: 37425937 PMCID: PMC10327113 DOI: 10.1101/2023.06.27.546656] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/11/2023]
Abstract
Connections between neurons can be mapped by acquiring and analyzing electron microscopic (EM) brain images. In recent years, this approach has been applied to chunks of brains to reconstruct local connectivity maps that are highly informative, yet inadequate for understanding brain function more globally. Here, we present the first neuronal wiring diagram of a whole adult brain, containing 5×107 chemical synapses between ~130,000 neurons reconstructed from a female Drosophila melanogaster. The resource also incorporates annotations of cell classes and types, nerves, hemilineages, and predictions of neurotransmitter identities. Data products are available by download, programmatic access, and interactive browsing and made interoperable with other fly data resources. We show how to derive a projectome, a map of projections between regions, from the connectome. We demonstrate the tracing of synaptic pathways and the analysis of information flow from inputs (sensory and ascending neurons) to outputs (motor, endocrine, and descending neurons), across both hemispheres, and between the central brain and the optic lobes. Tracing from a subset of photoreceptors all the way to descending motor pathways illustrates how structure can uncover putative circuit mechanisms underlying sensorimotor behaviors. The technologies and open ecosystem of the FlyWire Consortium set the stage for future large-scale connectome projects in other species.
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Affiliation(s)
- Sven Dorkenwald
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Computer Science Department, Princeton University, Princeton, USA
| | - Arie Matsliah
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Amy R Sterling
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Eyewire, Boston, USA
| | - Philipp Schlegel
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK
- Drosophila Connectomics Group, Department of Zoology, University of Cambridge, Cambridge, UK
| | - Szi-chieh Yu
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | | | - Albert Lin
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Center for the Physics of Biological Function, Princeton University, Princeton, USA
| | - Marta Costa
- Drosophila Connectomics Group, Department of Zoology, University of Cambridge, Cambridge, UK
| | - Katharina Eichler
- Drosophila Connectomics Group, Department of Zoology, University of Cambridge, Cambridge, UK
| | - Yijie Yin
- Drosophila Connectomics Group, Department of Zoology, University of Cambridge, Cambridge, UK
| | - Will Silversmith
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | | | - Chris S. Jordan
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | | | - Akhilesh Halageri
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Kai Kuehner
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | | | - Ryan Morey
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Jay Gager
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | | | | | - Runzhe Yang
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Computer Science Department, Princeton University, Princeton, USA
| | - David Deutsch
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Department of Neurobiology, University of Haifa, Haifa, Israel
| | - Doug Bland
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Marissa Sorek
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Eyewire, Boston, USA
| | - Ran Lu
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Thomas Macrina
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Computer Science Department, Princeton University, Princeton, USA
| | - Kisuk Lee
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Brain & Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, USA
| | - J. Alexander Bae
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Electrical and Computer Engineering Department, Princeton University, Princeton, USA
| | - Shang Mu
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Barak Nehoran
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Computer Science Department, Princeton University, Princeton, USA
| | - Eric Mitchell
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Sergiy Popovych
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Computer Science Department, Princeton University, Princeton, USA
| | - Jingpeng Wu
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Zhen Jia
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Manuel Castro
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Nico Kemnitz
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Dodam Ih
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
| | - Alexander Shakeel Bates
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK
- Drosophila Connectomics Group, Department of Zoology, University of Cambridge, Cambridge, UK
- Harvard Medical School, Boston, USA
- Centre for Neural Circuits and Behaviour, The University of Oxford, Oxford, UK
| | - Nils Eckstein
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA
| | - Jan Funke
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA
| | | | - Davi D. Bock
- Department of Neurological Sciences, Larner College of Medicine, University of Vermont, Burlington, USA
| | - Gregory S.X.E Jefferis
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK
- Drosophila Connectomics Group, Department of Zoology, University of Cambridge, Cambridge, UK
| | - H. Sebastian Seung
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
- Computer Science Department, Princeton University, Princeton, USA
| | - Mala Murthy
- Princeton Neuroscience Institute, Princeton University, Princeton, USA
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