Genetic diversity of Ethiopian sorghum reveals signatures of climatic adaptation

A large collection of Ethiopian sorghum landraces, characterized by agro-ecology and racial-group, was found to contain high levels of diversity and admixture, with significant SNP associations identified for environmental adaptation. Sorghum [Sorghum bicolor L. (Moench)] is a major staple food crop in Ethiopia, exhibiting extensive genetic diversity with adaptations to diverse agroecologies. The environmental and climatic drivers, as well as the genomic basis of adaptation, are poorly understood in Ethiopian sorghum and are critical elements for the development of climate-resilient crops. Exploration of the genome-environment association (GEA) is important for identifying adaptive loci and predicting phenotypic variation. The current study aimed to better understand the GEA of a large collection of Ethiopian sorghum landraces (n = 940), characterized with genome-wide SNP markers, to investigate key traits related to adaptation to temperature, precipitation and altitude. The Ethiopian sorghum landrace collection was found to consist of 12 subpopulations with high levels of admixture (47%), representing all the major racial groups of cultivated sorghum with the exception of kafir. Redundancy analysis indicated that agroecology explained up to 10% of the total SNP variation, and geographical location up to 6%. GEA identified 18 significant SNP markers for environmental variables. These SNPs were found to be significantly enriched (P < 0.05) for a priori QTL for drought and cold adaptation. The findings from this study improve our understanding of the genetic control of adaptive traits in Ethiopian sorghum. Further, the Ethiopian sorghum germplasm collection provides sources of adaptation to harsh environments (cold and/or drought) that could be deployed in breeding programs globally for abiotic stress adaptation.

Post-head-emergence frost in wheat and barley: defining the problem, assessing the damage, and identifying resistance

Radiant frost is a significant production constraint to wheat (Triticum aestivum) and barley (Hordeum vulgare), particularly in regions where spring-habit cereals are grown through winter, maturing in spring. However, damage to winter-habit cereals in reproductive stages is also reported. Crops are particularly susceptible to frost once awns or spikes emerge from the protection of the flag leaf sheath. Post-head-emergence frost (PHEF) is a problem distinct from other cold-mediated production constraints. To date, useful increased PHEF resistance in cereals has not been identified. Given the renewed interest in reproductive frost damage in cereals, it is timely to review the problem. Here we update the extent and impacts of PHEF and document current management options to combat this challenge. We clarify terminology useful for discussing PHEF in relation to chilling and other freezing stresses. We discuss problems characterizing radiant frost, the environmental conditions leading to PHEF damage, and the effects of frost at different growth stages. PHEF resistant cultivars would be highly desirable, to both reduce the incidence of direct frost damage and to allow the timing of crop maturity to be managed to maximize yield potential. A framework of potential adaptation mechanisms is outlined. Clarification of these critical issues will sharpen research focus, improving opportunities to identify genetic sources for improved PHEF resistance.

Current and emerging screening methods to identify post-head-emergence frost adaptation in wheat and barley

Cereal crops can suffer substantial damage if frosts occur at heading. Identification of post-head-emergence frost (PHEF) resistance in cereals poses a number of unique and difficult challenges. Many decades of research have failed to identify genotypes with PHEF resistance that could offer economically significant benefit to growers. Research and breeding gains have been limited by the available screening systems. Using traditional frost screening systems, genotypes that escape frost injury in trials due to spatial temperature differences and/or small differences in phenology can be misidentified as resistant. We believe that by improving techniques to minimize frost escapes, such 'false-positive' results can be confidently identified and eliminated. Artificial freezing chambers or manipulated natural frost treatments offer many potential advantages but are not yet at the stage where they can be reliably used for frost screening in breeding programmes. Here we describe the development of a novel photoperiod gradient method (PGM) that facilitates screening of genotypes of different phenology under natural field frosts at matched developmental stages. By identifying frost escapes and increasing the efficiency of field screening, the PGM ensures that research effort can be focused on finding genotypes with improved PHEF resistance. To maximize the likelihood of identifying PHEF resistance, we propose that the PGM form part of an integrated strategy to (i) source germplasm;(ii) facilitate high throughput screening; and (iii) permit detailed validation. PGM may also be useful in other studies where either a range of developmental stages and/or synchronized development are desired.

Developmental and physiological traits associated with high yield and stay-green phenotype in wheat

Water availability is a key limiting factor in wheat production in the northern grain belt of Australia. Varieties with improved adaptation to such conditions are actively sought. The CIMMYT wheat line SeriM82 has shown a significant yield advantage in multi-environment screening trials in this region. The objective of this study was to identify the physiological basis of the adaptive traits underpinning this advantage. Six detailed experiments were conducted to compare the growth, development, and yield of SeriM82 with that of the adapted cultivar, Hartog. The experiments were undertaken in field environments that represented the range of moisture availability conditions commonly encountered by winter crops grown on the deep Vertosol soils of this region. The yield of SeriM82 was 6–28% greater than that of Hartog, and SeriM82 exhibited a stay-green phenotype by maintaining green leaf area longer during the grain-filling period in all environments where yield was significantly greater than Hartog. However, where the availability of deep soil moisture was limited, SeriM82 failed to exhibit significantly greater yield or to express the stay-green phenotype. Thus, the stay-green phenotype was closely associated with the yield advantage of SeriM82. SeriM82 also exhibited higher mean grain mass than Hartog in all environments. It is suggested that small differences in water use before anthesis, or greater water extraction from depth after anthesis, could underlie the stay-green phenotype. The inability of SeriM82 to exhibit stay-green and higher yield where deep soil moisture was depleted indicates that extraction of deep soil moisture is important.

Enhancing food security in semi-arid eastern Indonesia through permanent raised-bed cropping: a review

Summary. Much of south-eastern Indonesia is mountainous and characterised by a semi-arid tropical environment. Soil erosion is a significant environmental problem facing the region, affecting both productivity of the land and water quality. The challenge for the region is to secure year-round food production in such a fragile environment. More than 90% of rain falls in a distinct wet season between November and April. Therefore, cropping in this region is dependent on matching crop growth with water supply. In particular, crop production depends on the efficient use of rainfall during the wet season, including avoidance of waterlogging, and efficient use of stored soil water during the dry season. This paper summarises the results of a series of experiments undertaken in West Timor, Indonesia, between 1993 and 1999 aimed at developing a raised-bed cropping system. The objective of these studies was to better utilise the more fertile alluvial soils that are often susceptible to waterlogging during the wet season, allowing a range of crops to be grown in addition to rice. Raised beds of height 0.2 m and width 1.5 m were constructed either manually or with an 8.5 hp two-wheeled hand tractor. A range of crops including soybeans, sorghum, maize, pigeon pea, yam bean and cassava were successfully grown on raised beds in the wet season in addition to rice, indicating that raised-bed technology overcomes the constraints of waterlogging in the wet season. Soybeans grew particularly well on raised beds, with December-sown crops producing almost twice the yield of January-sown crops (2.6 v. 1.4 t/ha). For rice and soybeans, early sown crops were better able to match growth with water supply, thereby avoiding end-of-season drought. Early sowing and harvesting of wet season crops enables a drought-resistant crop such as sorghum to be planted in lateMarch or early April, utilising the stored soil moisture for grain production and also maintaining ground cover in the dry season. It is argued that cropping systems based on permanent raised beds can reduce erosion in 2 ways. First, raised beds are a permanent structure and, with the inter-cropping and relay-cropping proposed, crops can provide all-year ground cover in lowland areas. Second, if sufficient food and cash crops are grown on raised beds to meet the basic needs of subsistence farmers, then upland cropping on steep slopes can be replaced by a variety of tree species, providing additional food, fodder, firewood and medicines. Together, these strategies have the capacity to enhance food production and security in the semi-arid areas of eastern Indonesia.

Season, nitrogen rate, and plant type affect nitrogen uptake and nitrogen use efficiency in rice

Studies were undertaken in the Burdekin River Irrigation Area of northern Australia to improve the efficiency of nitrogen (N) use for rice (Oryza sativa L.) production. The aim was to maximise grain yield by optimising its functional components: N uptake, efficiency of N use for dry matter production (NUEdm), and harvest index (HI). The effiects of season (wet and dry), N rate (0, 70, 140, 210, and 280 kg/ha), and plant type (maturity and stature) on N uptake, NUEdm, and HI were examined in 2 wet and 2 dry seasons. Leaf area development was closely related to N uptake. In the wet season, genotypes had similar rates of increase in leaf area index (LAI) with N uptake but differed in the level of LAI (curves were parallel). In the dry season, the relationship between N uptake and LAI was different for each genotype (curves not parallel). In both seasons cv. Newbonnet generally had a lower LAI per unit N uptake (i.e. leaf area production was not excessive) than cvv. Lemont and Starbonnet. Dry matter production and grain yield were also closely related to N uptake. At low levels of N availability (N uptake <100 kg/ha) tissue N concentrations were low and both total above-ground dry mass (AGDM) and grain yield were linearly related to N uptake. As N availability increased, N uptake and tissue N concentration increased, resulting in a deviation of the AGDM and grain yield curves from the linear at about 100 kg/haN uptake. This finally resulted in AGDM and grain yield plateauing at around 200 kg/ha N uptake. Above this level some factors other than N availability limited yield. Seasonal differences in N uptake, NUEdm, and HI were observed. Seasonal variation in the response of grain yield to N uptake was found. There was a trend for higher N uptake in the absence of fertiliser application in the wet than the dry season, and the recovery fraction was less for N rates >140 kg/ha in all seasons, i.e. fertiliser N uptake efficiency declined with increasing N rate. Nitrogen was used more effectively by the rice crop to produce grain compared with non-grain parts when average daily mean temperatures were lower during the period between panicle initiation and anthesis. Genotypic variation was found in N uptake, NUEdm, and HI. The ability to capture these components in crop improvement programs depends on the extent to which genetic linkages between N uptake and both NUEdm and HI can be broken. While our data suggest that N uptake is generally negatively correlated with both NUEdm and HI, there is some evidence that these linkages can be broken. For example, the fact that HIdid not change with increasing N uptake in Lemont and, to a lesser extent, in Newbonnet suggests that HI does not always decline with increasing N uptake. The example of Newbonnet suggests that, to some extent, it is possible to increase yield by increasing each of the functional components independently within a specific genotype.