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Girdhar K, Thakur S, Gaur P, Choubey A, Dogra S, Dehury B, Kumar S, Biswas B, Dwivedi DK, Ghosh S, Mondal P. Design, synthesis, and biological evaluation of a small molecule oral agonist of the glucagon-like-peptide-1 receptor. J Biol Chem 2022; 298:101889. [PMID: 35378127 PMCID: PMC9095748 DOI: 10.1016/j.jbc.2022.101889] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/15/2022] [Accepted: 03/23/2022] [Indexed: 11/28/2022] Open
Abstract
An absolute or relative deficiency of pancreatic β-cells mass and functionality is a crucial pathological feature common to type 1 diabetes mellitus and type 2 diabetes mellitus. Glucagon-like-peptide-1 receptor (GLP1R) agonists have been the focus of considerable research attention for their ability to protect β-cell mass and augment insulin secretion with no risk of hypoglycemia. Presently commercially available GLP1R agonists are peptides that limit their use due to cost, stability, and mode of administration. To address this drawback, strategically designed distinct sets of small molecules were docked on GLP1R ectodomain and compared with previously known small molecule GLP1R agonists. One of the small molecule PK2 (6-((1-(4-nitrobenzyl)-1H-1,2,3-triazol-4-yl)methyl)-6H-indolo[2,3-b]quinoxaline) displays stable binding with GLP1R ectodomain and induces GLP1R internalization and increasing cAMP levels. PK2 also increases insulin secretion in the INS-1 cells. The oral administration of PK2 protects against diabetes induced by multiple low-dose streptozotocin administration by lowering high blood glucose levels. Similar to GLP1R peptidic agonists, treatment of PK2 induces β-cell replication and attenuate β-cell apoptosis in STZ-treated mice. Mechanistically, this protection was associated with decreased thioredoxin-interacting protein expression, a potent inducer of diabetic β-cell apoptosis and dysfunction. Together, this report describes a small molecule, PK2, as an orally active nonpeptidic GLP1R agonist that has efficacy to preserve or restore functional β-cell mass.
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Affiliation(s)
- Khyati Girdhar
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Shilpa Thakur
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Pankaj Gaur
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Abhinav Choubey
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Surbhi Dogra
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Budheswar Dehury
- Bioinformatics Division, ICMR-Regional Medical Research Centre, Bhubaneswar, India
| | - Sunil Kumar
- ICAR-Indian Agricultural Statistics Research Institute (IASRI), PUSA, New Delhi, India
| | - Bidisha Biswas
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Durgesh Kumar Dwivedi
- Pharmacology Division, CCRAS-Regional Ayurveda Research Institute, Gwalior, MP, India
| | - Subrata Ghosh
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India
| | - Prosenjit Mondal
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, HP, India.
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gv A, Choubey A, Nanda S, Mukherji A, Pradhan S, Kapoor A, Mishra A, S D, Devalla A. PO-1101 Early NGT insertion prevents weight loss & treatment breaks in post-op CTRT and QoL assessment. Radiother Oncol 2022. [DOI: 10.1016/s0167-8140(22)03065-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Abstract
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is the cause of Coronavirus Disease (COVID-19) that has resulted in a global pandemic. At the time of writing, approximately 16.06 million cases have been reported worldwide. Like other coronaviruses, SARS-CoV-2 relies on the surface Spike glycoprotein to access the host cells, mainly through the interaction of its Receptor Binding Domain (RBD) with the host receptor Angiotensin-Converting Enzyme2 (ACE2). SARS-CoV-2 infection induces a profound downstream pro-inflammatory cytokine storm. This release of the pro-inflammatory cytokines is underpinning lung tissue damage, respiratory failure, and eventually multiple organ failure in COVID-19 patients. The phosphorylation status of ERK1/2 is positively correlated with virus load and ERK1/2 inhibition suppressed viral replication and viral infectivity. Therefore, molecular entities able to interfere with binding of the SARS-CoV-2 Spike protein to ACE2, or damping hyperinflammatory cytokines storm, blocking ERK1/2 phosphorylation have a great potential to inhibit viral entry along with viral infectivity. Herein, we report that the FDA-approved non-peptide opioid antagonist drug, naltrexone suppresses high fat/LPS induced pro-inflammatory cytokine release both from macrophage cells and Adipose Tissue Macrophage. Moreover, Low Dose Naltrexone (LDN) also showed its activity as an ERK1/2 inhibitor. Notably, virtual docking and simulation data also suggest LDN may disrupt the interaction of ACE2 with RBD. LDN may be considered as a target as the treatment and (or) adjuvant therapy for coronavirus infection. Clinical toxicity measurements may not be required for LDN since naltrexone was previously tested and is an approved drug by the FDA.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Abhinav Choubey
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P., India
| | - Budheswar Dehury
- School of Biotechnology, Kalinga Institute of Industrial Technology (KIIT), Deemed to be University, Bhubaneswar, India
| | - Sunil Kumar
- ICAR-Indian Agricultural Statistical Research Institute, PUSA, New Delhi, India
| | - Bikash Medhi
- Department of Pharmacology, Post Graduate Institute of Medical Education and Research, Chandigarh, India
| | - Prosenjit Mondal
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P., India
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Shitole P, Choubey A, Mondal P, Ghosh R. LDN Protects Bone Property Deterioration at Different Hierarchical Levels in T2DM Mice Bone. ACS Omega 2021; 6:20369-20378. [PMID: 34395985 PMCID: PMC8358965 DOI: 10.1021/acsomega.1c02371] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 07/19/2021] [Indexed: 06/13/2023]
Abstract
Type 2 diabetes mellitus (T2DM) commonly affects bone quality at different hierarchical levels and leads to an increase in the risk of bone fracture. Earlier, some anti-diabetic drugs showed positive effects on bone mechanical properties. Recently, we have investigated that low-dose naltrexone (LDN), a TLR4 antagonist treatment, improves glucose tolerance in high-fat diet (HFD)-induced T2DM mice and also gives protection against HFD-induced weight gain. However, effects on bone are still unknown. In this study, the effects of LDN on the bone properties at different hierarchical levels in T2DM mice bone were investigated. In order to investigate these, four different groups of bone (divided based on diet and treatment) were considered in this present study. These are (a) normal control diet treated with saline water, (b) normal control diet treated with LDN, (c) HFD treated with saline water, and (d) HFD treated with LDN. Bone properties were measured in terms of fracture toughness, nano-Young's modulus, hardness, mineral crystal size, bone composition, and bulk mineral to matrix ratio. Results indicated that fracture toughness, nano-Young's modulus, and hardness were decreased in T2DM bone as compared to normal bone, and interestingly, treatment with the LDN increases these material properties in T2DM mice bone. Similarly, as compared to the normal bone, decrease in the mineral crystal size and bulk mineral-to-matrix ratio was observed in the T2DM bone, whereas LDN treatment protects these alterations in the T2DM mice bone. The bone size (bone geometry) was increased in the case of HFD-induced T2DM bone; however, LDN cannot protect to increase the bone size in the T2DM mice bone. In conclusion, LDN can be used to control the T2DM-affected bone properties at different hierarchical levels.
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Affiliation(s)
- Pankaj Shitole
- School
of Engineering, Indian Institute of Technology
Mandi, Kamand, Mandi 175005, Himachal
Pradesh, India
| | - Abhinav Choubey
- School
of Basic Science, Indian Institute of Technology
Mandi, Kamand, Mandi 175005, Himachal Pradesh, India
| | - Prosenjit Mondal
- School
of Basic Science, Indian Institute of Technology
Mandi, Kamand, Mandi 175005, Himachal Pradesh, India
| | - Rajesh Ghosh
- School
of Engineering, Indian Institute of Technology
Mandi, Kamand, Mandi 175005, Himachal
Pradesh, India
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Mondal P, Choubey A. Chromatin protein HMGB1 regulates hyperinsulinemia mediated insulin resistance: low‐dose naltrexone rescues insulin resistance associated with hyperinsulinemia. FASEB J 2021. [DOI: 10.1096/fasebj.2021.35.s1.02763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Shitole P, Choubey A, Mondal P, Ghosh R. Influence of low dose naltrexone on Raman assisted bone quality, skeletal advanced glycation end-products and nano-mechanical properties in type 2 diabetic mice bone. Mater Sci Eng C Mater Biol Appl 2021; 123:112011. [PMID: 33812630 DOI: 10.1016/j.msec.2021.112011] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 02/15/2021] [Accepted: 03/01/2021] [Indexed: 12/12/2022]
Abstract
Type 2 diabetes mellitus (T2DM) commonly affects the bone mineral phase and advanced glycation end-products (AGEs) which eventually led to changes in bone material properties on the nano and macro-scale. Several anti-diabetic compounds are widely used to control high blood sugar or glucose caused by T2DM. Low Dose Naltrexone (LDN), an opiate receptor antagonist, and a known TLR4 antagonist, treatment can improve glucose tolerance and insulin sensitivity in high-fat-diet (HFD) induced T2DM mice. However, the influences of LDN on the local bone quality, mineralization of the bone, and the skeletal AGEs levels have not been fully elucidated. The objective of this study is to understand the effect of LDN on Raman assisted bone quality, skeletal AGEs (determined by Raman spectroscopy), and nano-mechanical properties in HFD induced T2DM mice bone. In order to investigate these, mice and corresponding bones were divided into four groups (divided based on diet and treatment), (a) normal control diet treated with saline water, (b) normal control diet treated with LDN, (c) HFD treated with saline water, and (d) HFD treated with LDN. In T2DM condition (HFD treated with saline water), alteration of Raman-based compositional measures in bone quality including mineral-to-matrix ratios, carbonate substitution, mineral crystallinity, and collagen quality was observed. Our data also indicated that T2DM enhances the skeletal AGEs, and impairs the nano-mechanical properties. Interestingly, present results indicated that LDN controls the Raman-based compositional measures in bone quality in HFD induced T2DM mice bone. Additionally, LDN also protects the alteration of the skeletal AGEs levels and nano-mechanical properties in T2DM mice bone. This study concluded that LDN can control the HFD induced T2DM affected bone abnormalities at multiple hierarchical levels.
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Affiliation(s)
- Pankaj Shitole
- School of Engineering, Indian Institute of Technology Mandi, Kamand, Mandi, 175005, Himachal Pradesh, India
| | - Abhinav Choubey
- School of Basic Science, Indian Institute of Technology Mandi, Kamand, Mandi, 175005, Himachal Pradesh, India
| | - Prosenjit Mondal
- School of Basic Science, Indian Institute of Technology Mandi, Kamand, Mandi, 175005, Himachal Pradesh, India.
| | - Rajesh Ghosh
- School of Engineering, Indian Institute of Technology Mandi, Kamand, Mandi, 175005, Himachal Pradesh, India.
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Abstract
Introduction Coronavirus disease 2019 (COVID-19) is an extremely infectious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The outbreak of this virus has resulted in significant morbidity and mortality throughout the world. We have seen an unprecedented spread of this virus, leading to extreme pressure on health-care services. Mycoplasma pneumoniae causes atypical bacterial pneumonia and is known to co-infect patients with viral pneumonias. Methods In this retrospective study, patients' data of 580 inpatients with confirmed SARS-CoV-2 infection were reviewed retrospectively over a 3-month period which included the the first peak of COVID-19 infections in the UK. Results Eight patients with COVID-19 and M. pneumoniae coinfection were identified - four males and four females. All patients were Caucasian, with an age range of 44-89 years. 37.5% of patients were hypertensive, whereas 25% had Type 2 diabetes mellitus. Dyspnea, cough, and pyrexia were found to be very common in these patients. Majority of the patients had abnormal C-reactive protein, lymphopenia, neutrophilia along with bilateral consolidation, and ground-glass opacities. Two patients required admission to intensive care, both of whom unfortunately died along with one patient receiving ward based care. Conclusion Our confirmed the presence of co-infection with M. pneumoniae and describes the clinical features, investigation results, clinical course, and outcomes for these patients. Further research is needed to review the role of procalcitonin in excluding bacterial co-infection and to assess the impact of co-infection of patients with COVID-19 on morbidity and mortality.
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Affiliation(s)
- Abhinav Choubey
- Department of Respiratory Medicine, Doncaster Royal Infirmary, UK
| | - Diaeddin Sagar
- Department of Critical Care, Doncaster Royal Infirmary, Sheffield Teaching Hospitals, UK
| | - Philippa Cawley
- Department of Respiratory Medicine, Doncaster Royal Infirmary, UK
| | - Katherine Miller
- Department of Respiratory Medicine, Doncaster Royal Infirmary, UK
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Daniel PV, Dogra S, Rawat P, Choubey A, Khan AS, Rajak S, Kamthan M, Mondal P. NF-κB p65 regulates hepatic lipogenesis by promoting nuclear entry of ChREBP in response to a high carbohydrate diet. J Biol Chem 2021; 296:100714. [PMID: 33930463 PMCID: PMC8144664 DOI: 10.1016/j.jbc.2021.100714] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 04/19/2021] [Accepted: 04/26/2021] [Indexed: 12/15/2022] Open
Abstract
Overconsumption of sucrose and other sugars has been associated with nonalcoholic fatty liver disease (NAFLD). Reports suggest hepatic de novo lipogenesis (DNL) as an important contributor to and regulator of carbohydrate-induced hepatic lipid accumulation in NAFLD. The mechanisms responsible for the increase in hepatic DNL due to overconsumption of carbohydrate diet are less than clear; however, literatures suggest high carbohydrate diet to activate the lipogenic transcription factor carbohydrate response element-binding protein (ChREBP), which further transcribes genes involved in DNL. Here, we provide an evidence of an unknown link between nuclear factor kappa-light chain enhancer of activated B cells (NF-κB) activation and increased DNL. Our data indicates high carbohydrate diet to enforce nuclear shuttling of hepatic NF-κB p65 and repress transcript levels of sorcin, a cytosolic interacting partner of ChREBP. Reduced sorcin levels, further prompted ChREBP nuclear translocation, leading to enhanced DNL and intrahepatic lipid accumulation both in vivo and in vitro. We further report that pharmacological inhibition of NF-κB abrogated high carbohydrate diet-mediated sorcin repression and thereby prevented ChREBP nuclear translocation and this, in turn, attenuated hepatic lipid accumulation both in in vitro and in vivo. Additionally, sorcin knockdown blunted the lipid-lowering ability of the NF-κB inhibitor in vitro. Together, these data suggest a heretofore unknown role for NF-κB in regulating ChREBP nuclear localization and activation, in response to high carbohydrate diet, for further explorations in lines of NAFLD therapeutics.
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Affiliation(s)
- P Vineeth Daniel
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Surbhi Dogra
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Priya Rawat
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Abhinav Choubey
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Aiysha Siddiq Khan
- Department of Biochemistry, School of Chemical and Life Sciences Jamia Hamdard, New Delhi, India
| | - Sangam Rajak
- Department of Endocrinology, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Lucknow, India
| | - Mohan Kamthan
- Department of Biochemistry, School of Chemical and Life Sciences Jamia Hamdard, New Delhi, India.
| | - Prosenjit Mondal
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India.
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Choubey A, Girdhar K, Kar AK, Kushwaha S, Yadav MK, Ghosh D, Mondal P. Low-dose naltrexone rescues inflammation and insulin resistance associated with hyperinsulinemia. J Biol Chem 2020; 295:16359-16369. [PMID: 32943552 DOI: 10.1074/jbc.ra120.013484] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 09/14/2020] [Indexed: 11/06/2022] Open
Abstract
The incidence of diabetes, obesity, and metabolic diseases has reached an epidemic status worldwide. Insulin resistance is a common link in the development of these conditions, and hyperinsulinemia is a central hallmark of peripheral insulin resistance. However, how hyperinsulinemia leads to systemic insulin resistance is less clear. We now provide evidence that hyperinsulinemia promotes the release of soluble pro-inflammatory mediators from macrophages that lead to systemic insulin resistance. Our observations suggest that hyperinsulinemia induces sirtuin1 (SIRT1) repression and stimulates NF-κB p65 nuclear translocation and transactivation of NF-κB to promote the extracellular release of pro-inflammatory mediators. We further showed that low-dose naltrexone (LDN) abrogates hyperinsulinemia-mediated SIRT1 repression and prevents NF-κB p65 nuclear translocation. This, in turn, attenuates the hyperinsulinemia-induced release of pro-inflammatory cytokines and reinstates insulin sensitivity both in in vitro and in vivo diet-induced hyperinsulinemic mouse model. Notably, our data indicate that Sirt1 knockdown or inhibition blunts the anti-inflammatory properties of LDN in vitro Using numerous complementary in silico and in vitro experimental approaches, we demonstrated that LDN can bind to SIRT1 and increase its deacetylase activity. Together, these data support a critical role of SIRT1 in inflammation and insulin resistance in hyperinsulinemia. LDN improves hyperinsulinemia-induced insulin resistance by reorienting macrophages toward anti-inflammation. Thus, LDN treatment may provide a novel therapeutic approach against hyperinsulinemia-associated insulin resistance.
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Affiliation(s)
- Abhinav Choubey
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, India; BioX Centre, Indian Institute of Technology Mandi, Mandi, India
| | - Khyati Girdhar
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, India; BioX Centre, Indian Institute of Technology Mandi, Mandi, India
| | - Aditya K Kar
- CSIR-Indian Institute of Toxicology Research (CSIR-IITR), Lucknow, Uttar Pradesh, India
| | - Shaivya Kushwaha
- CSIR-Indian Institute of Toxicology Research (CSIR-IITR), Lucknow, Uttar Pradesh, India
| | - Manoj Kumar Yadav
- Department of Bioinformatics, SRM University, Delhi-NCR, Sonipat, Haryana, India
| | - Debabrata Ghosh
- CSIR-Indian Institute of Toxicology Research (CSIR-IITR), Lucknow, Uttar Pradesh, India
| | - Prosenjit Mondal
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, India; BioX Centre, Indian Institute of Technology Mandi, Mandi, India.
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Dogra S, Kar AK, Girdhar K, Daniel PV, Chatterjee S, Choubey A, Ghosh S, Patnaik S, Ghosh D, Mondal P. Zinc oxide nanoparticles attenuate hepatic steatosis development in high-fat-diet fed mice through activated AMPK signaling axis. Nanomedicine 2019; 17:210-222. [PMID: 30708053 DOI: 10.1016/j.nano.2019.01.013] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 11/22/2018] [Accepted: 01/11/2019] [Indexed: 01/01/2023]
Abstract
Insulin resistance is thought to be a common link between obesity and Non-Alcoholic Fatty Liver Disease (NAFLD). NAFLD has now reached epidemic status worldwide and identification of molecules or pathways as newer therapeutic strategies either to prevent or overcome insulin resistance seems critical. Dysregulated hepatic lipogenesis (DNL) is a hallmark of NAFLD in humans and rodents. Therefore, reducing DNL accretion may be critical in the development of therapeutics of NAFLD. In our in vivo model (high-fat-diet fed [HFD] obese mice) we found Zinc oxide nanoparticles (ZnO NPs) significantly decreased HFD-induced hepatic steatosis and peripheral insulin resistance. This protective mechanism of ZnO NPs was signaled through hepatic SIRT1-LKB1-AMPK which restricted SREBP-1c within the cytosol limiting its transcriptional ability and thereby ameliorating HFD mediated DNL. These observations indicate that ZnO NP can serve as a therapeutic strategy to improve the physiological homeostasis during obesity and its associated metabolic abnormalities.
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Affiliation(s)
- Surbhi Dogra
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India
| | - Aditya K Kar
- CSIR-Indian Institute of Toxicology Research (CSIR-IITR), Lucknow, Uttar Pradesh, India
| | - Khyati Girdhar
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India
| | - P Vineeth Daniel
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India
| | - Swarup Chatterjee
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India
| | - Abhinav Choubey
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India
| | - Subrata Ghosh
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India
| | - Satyakam Patnaik
- CSIR-Indian Institute of Toxicology Research (CSIR-IITR), Lucknow, Uttar Pradesh, India
| | - Debabrata Ghosh
- CSIR-Indian Institute of Toxicology Research (CSIR-IITR), Lucknow, Uttar Pradesh, India.
| | - Prosenjit Mondal
- School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, H.P, India.
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Girdhar K, Dehury B, Kumar Singh M, Daniel VP, Choubey A, Dogra S, Kumar S, Mondal P. Novel insights into the dynamics behavior of glucagon-like peptide-1 receptor with its small molecule agonists. J Biomol Struct Dyn 2018; 37:3976-3986. [DOI: 10.1080/07391102.2018.1532818] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Khyati Girdhar
- aSchool of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Budheswar Dehury
- bBiomedical Informatics Centre ICMR-Regional Medical Research Centre, Bhubaneswar, Odisha, India
- cDepartment of Chemistry, Technical University of Denmark, Denmark
| | | | - Vineeth P. Daniel
- aSchool of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Abhinav Choubey
- aSchool of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Surbhi Dogra
- aSchool of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
| | - Sunil Kumar
- eICAR-National Bureau of Agriculturally Important Microorganism, Kushmaur, Mau Nath Bhanjan, Uttar Pradesh, India
| | - Prosenjit Mondal
- aSchool of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India
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Borgohain MP, Lahkar M, Ahmed S, Chowdhury L, Kumar S, Pant R, Choubey A. Small Molecule Inhibiting Nuclear Factor-kB Ameliorates Oxidative Stress and Suppresses Renal Inflammation in Early Stage of Alloxan-Induced Diabetic Nephropathy in Rat. Basic Clin Pharmacol Toxicol 2017; 120:442-449. [DOI: 10.1111/bcpt.12718] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Accepted: 11/22/2016] [Indexed: 01/23/2023]
Affiliation(s)
- Manash P. Borgohain
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
| | - Mangala Lahkar
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
- Department of Pharmacology; Gauhati Medical College & Hospital; Guwahati Assam India
- Institute Level Biotech-hub; National Institute of Pharmaceutical Education & Research; Guwahati Assam India
| | - Sahabuddin Ahmed
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
| | - Liakat Chowdhury
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
| | - Saurabh Kumar
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
| | - Rajat Pant
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
| | - Abhinav Choubey
- Department of Pharmacology & Toxicology; National Institute of Pharmaceutical Education and Research; Guwahati Assam India
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Bhagavannarayana G, Choubey A, Kushwaha SK, Sharma SN, Rani R, Vijayan N. A study of as-grown, poled and reduced Rh-doped KNbO 3 single crystals by high-resolution X-ray diffraction, Raman scattering, photoluminescence and dielectric measurements. J Appl Crystallogr 2014. [DOI: 10.1107/s1600576714012758] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
As-grown and chemically reduced Rh-doped (1500 p.p.m.) KnbO3 single crystals grown by the Czochralski method have been characterized. Reduction of the grown crystals at different levels was carried out under a mixture of CO and CO2 gases as the crystals were grown with excess oxygen. The effect of reduction and poling on crystalline perfection was studied by high-resolution X-ray diffraction (HRXRD) using a multi-crystal X-ray diffractometer developed in-house. The diffraction curves of the as-grown, electrically poled, moderately reduced and heavily reduced single-crystal specimens show remarkable differences. The studies by HRXRD reveal that poling has some influence on the improvement of crystalline perfection, while chemical reduction has a great influence on crystalline perfection; at moderate reduction the crystal becomes nearly perfect, but when the reduction is very heavy the crystal quality decreases slightly, although it is still better than for unreduced samples. Asymmetry of the diffraction curves with respect to the peak position reveals that the as-grown specimens contain a high concentration of both vacancies and self-interstitials. After poling, the concentration of self-interstitial defects is lowered to some extent. When the specimen is moderately chemically reduced, the scattered intensity on both sides of the peak is greatly reduced, showing that the concentrations of both vacancies and interstitials are reduced to a great extent owing to chemical reduction. This clearly indicates that, as a result of the chemical reduction of oxygen in the crystal, crystalline perfection is enhanced significantly. However, under heavy chemical reduction, the number of vacancy defects is increased to a significant extent. Raman scattering, dielectric and photoluminescence studies also show interesting features, with excellent correlation with the degree of crystalline perfection influenced by the processes of reduction and poling.
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Choubey A, Sharma S, Lochab S, Kanjilal D. Correlation between ion induced defects and luminescence properties of K3Na(SO4)2: Eu nanophosphor. RADIAT MEAS 2011. [DOI: 10.1016/j.radmeas.2011.03.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Vedadi M, Choubey A, Nomura K, Kalia RK, Nakano A, Vashishta P, van Duin ACT. Structure and dynamics of shock-induced nanobubble collapse in water. Phys Rev Lett 2010; 105:014503. [PMID: 20867452 DOI: 10.1103/physrevlett.105.014503] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2009] [Revised: 04/01/2010] [Indexed: 05/20/2023]
Abstract
Shock-induced collapse of nanobubbles in water is investigated with molecular dynamics simulations based on a reactive force field. We observe a focused jet at the onset of bubble shrinkage and a secondary shock wave upon bubble collapse. The jet length scales linearly with the nanobubble radius, as observed in experiments on micron-to-millimeter size bubbles. Shock induces dramatic structural changes, including an ice-VII-like structural motif at a particle velocity of 1 km/s. The incipient ice VII formation and the calculated Hugoniot curve are in good agreement with experimental results.
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Affiliation(s)
- M Vedadi
- Collaboratory for Advanced Computing and Simulations, University of Southern California, Los Angeles, California 90089-0242, USA
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Medhi M, Patil AS, Halhalli MR, Choubey A, Wadgaonkar PP, Maldar NN. Novel poly(amide-hydrazide)s and copoly(amide-hydrazide)s from bis-(4-aminobenzyl) hydrazide and aromatic diacid chlorides: Synthesis and characterization. J Appl Polym Sci 2010. [DOI: 10.1002/app.31849] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Choubey A, Bhagavannarayana G, Shubin YV, Chakraborty BR, Lal K. Study of effect of thermal annealing on crystalline perfection of bismuth germanate single crystals grown by low thermal gradient Czochralski method. ACTA ACUST UNITED AC 2009. [DOI: 10.1524/zkri.217.10.515.20796] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
Bismuth germanate single crystals containing low angle and very low angle boundaries were selected as specimen for annealing experiments at 1000 °C for varying lengths of time in the range: 8 h to 80 h. Specimen with larger surface along (111) and (100) planes were investigated. The tilt angles of the boundaries were found to be in the range: 16 arc sec to 88 arc sec. Half widths of the diffraction curves of different subgrains were in the range: 15 arc sec to 39 arc sec. High resolution X-ray diffractometry and topography were employed for structural characterization and secondary ion mass spectrometry (SIMS) was used for study of impurity distribution. Annealing led to significant improvement in the crystalline perfection of specimen and all but one of the boundaries could be removed. The very low angle boundaries, which could not be annealed out, had a tilt angle of 41 arc sec. The half widths of diffraction curves of the two remaining subgrains were: 10 arc sec and 17 arc sec. The growth of subgrains as a result of annealing was investigated. SIMS investigation of annealed specimen, in which a very low angle boundary persisted, showed the boundary was decorated with silicon impurity, which presumably acted as a pining center. Detailed diffractometric and topographic experiments helped in delineating the two subgrains around the very low angle boundary. The morphological features of the very low angle boundary were studied in detail.
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Bhagavannarayana G, Choubey A, Shubin YV, Lal K. Study of point defects in as-grown and annealed bismuth germanate single crystals. J Appl Crystallogr 2005. [DOI: 10.1107/s002188980500590x] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Point defects and their clusters in bismuth germanate single crystals free from grain boundaries and having low density of dislocations were studied by high-resolution diffuse X-ray scattering measurements. Differences in defects in the colourless crystals (type A) and the crystals having yellow tinge (type B), which were grown with different raw materials, were investigated. In addition, interesting differences in defect structures in specimens from different regions of the same boule were investigated. Specimens with diffracting surfaces along (111), (112) and (100) planes were studied. A multicrystal X-ray diffractometer employing a well collimated and highly monochromated Mo Kα1 beam and set in (+,−,−,+) configuration was employed. The diffraction curves of all the samples were quite narrow with half-widths in the range 7–11 arcsec, which are close to the theoretically expected values, if instrumental broadenings are taken into account. The observed distribution of diffuse X-ray scattering (DXS) intensity showed that not all the point defects are isolated but a significant fraction are agglomerated into clusters. Experimental data of DXS intensity were analysed by using a phenomenological model for a small concentration of dislocation loops wherein the point defects are loosely clustered with weak interactions among them. From this analysis, the cluster radius R
cl, cluster volume A
cl, the number of point defects within a cluster N
cl and the relative concentration of the point-defect clusters among the samples were estimated. It was observed that cluster sizes do not vary from sample to sample. However, it was found that the concentration of clusters is approximately twice in the coloured sample compared with that of the colourless sample from the same boule. Annealing of the crystals at 1273 K produced an increase in point-defect clusters by a factor of ∼200. It was accompanied by a reduction in volume of clusters by a factor of ∼0.14.
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