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Chebotar VK, Gancheva MS, Chizhevskaya EP, Keleinikova OV, Baganova ME, Zaplatkin AN, Husainov KA. Whole-genome sequence of Kosakonia cowanii strain W006, isolated from seeds of Triticum aestivum L. Microbiol Resour Announc 2024; 13:e0118123. [PMID: 38488373 PMCID: PMC11008199 DOI: 10.1128/mra.01181-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 03/04/2024] [Indexed: 04/12/2024] Open
Abstract
In this study, we sequence, assemble, and annotate Kosakonia cowanii strain W006, isolated from seeds of Triticum aestivum L. W006 has a single circular chromosome of 4,788,099 bp and 4,466 genes, with a mean G +C content of 56.1%.
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Affiliation(s)
- Vladimir K. Chebotar
- All-Russia Research Institute for Agricultural Microbiology, St. Petersburg, Russia
| | - Maria S. Gancheva
- All-Russia Research Institute for Agricultural Microbiology, St. Petersburg, Russia
- Department of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, St. Petersburg, Russia
| | | | | | - Maria E. Baganova
- All-Russia Research Institute for Agricultural Microbiology, St. Petersburg, Russia
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Chebotar VK, Zaplatkin AN, Chizhevskaya EP, Gancheva MS, Voshol GP, Malfanova NV, Baganova ME, Khomyakov YV, Pishchik VN. Phytohormone Production by the Endophyte Bacillus safensis TS3 Increases Plant Yield and Alleviates Salt Stress. Plants (Basel) 2023; 13:75. [PMID: 38202382 PMCID: PMC10780329 DOI: 10.3390/plants13010075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 12/21/2023] [Accepted: 12/22/2023] [Indexed: 01/12/2024]
Abstract
Endophytic bacteria can be used to overcome the effect of salinity stress and promote plant growth and nutrient uptake. Bacillus safensis colonizes a wide range of habitats due to survival in extreme environments and unique physiological characteristics, such as a high tolerance for salt, heavy metals, and ultraviolet and gamma radiations. The aim of our study was to examine the salt resistance of the endophytic strain TS3 B. safensis and its ability to produce phytohormones and verify its effect on plant yield in field trials and the alleviation of salt stress in pot experiments. We demonstrate that the strain TS3 is capable of producing enzymes and phytohormones such as IAA, ABA and tZ. In pot experiments with radish and oat plants in salinization, the strain TS3 contributed to the partial removal of the negative effect of salinization. The compensatory effect of the strain TS3 on radish plants during salinization was 46.7%, and for oats, it was 108%. We suppose that such a pronounced effect on the plants grown and the salt stress is connected with its ability to produce phytohormones. Genome analysis of the strain TS3 showed the presence of the necessary genes for the synthesis of compounds responsible for the alleviation of the salt stress. Strain B. safensis TS3 can be considered a promising candidate for developing biofertilizer to alleviate salt stress and increase plant yield.
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Affiliation(s)
- Vladimir K. Chebotar
- All-Russia Research Institute for Agricultural Microbiology, Podbel’skogo Shosse 3, Pushkin, 196608 St. Petersburg, Russia; pisemnet-@mail.ru (A.N.Z.); (E.P.C.); (M.S.G.); (M.E.B.); (V.N.P.)
| | - Alexander N. Zaplatkin
- All-Russia Research Institute for Agricultural Microbiology, Podbel’skogo Shosse 3, Pushkin, 196608 St. Petersburg, Russia; pisemnet-@mail.ru (A.N.Z.); (E.P.C.); (M.S.G.); (M.E.B.); (V.N.P.)
| | - Elena P. Chizhevskaya
- All-Russia Research Institute for Agricultural Microbiology, Podbel’skogo Shosse 3, Pushkin, 196608 St. Petersburg, Russia; pisemnet-@mail.ru (A.N.Z.); (E.P.C.); (M.S.G.); (M.E.B.); (V.N.P.)
| | - Maria S. Gancheva
- All-Russia Research Institute for Agricultural Microbiology, Podbel’skogo Shosse 3, Pushkin, 196608 St. Petersburg, Russia; pisemnet-@mail.ru (A.N.Z.); (E.P.C.); (M.S.G.); (M.E.B.); (V.N.P.)
- Department of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, 199034 St. Petersburg, Russia
| | - Gerben P. Voshol
- Institute of Biology Leiden, Sylviusweg 72, 2333 BE Leiden, The Netherlands; (G.P.V.); (N.V.M.)
| | - Natalia V. Malfanova
- Institute of Biology Leiden, Sylviusweg 72, 2333 BE Leiden, The Netherlands; (G.P.V.); (N.V.M.)
| | - Maria E. Baganova
- All-Russia Research Institute for Agricultural Microbiology, Podbel’skogo Shosse 3, Pushkin, 196608 St. Petersburg, Russia; pisemnet-@mail.ru (A.N.Z.); (E.P.C.); (M.S.G.); (M.E.B.); (V.N.P.)
| | - Yuriy V. Khomyakov
- Agrophysical Scientific Research Institute, Grazhdansky pr. 14, 195220 St. Petersburg, Russia;
| | - Veronika N. Pishchik
- All-Russia Research Institute for Agricultural Microbiology, Podbel’skogo Shosse 3, Pushkin, 196608 St. Petersburg, Russia; pisemnet-@mail.ru (A.N.Z.); (E.P.C.); (M.S.G.); (M.E.B.); (V.N.P.)
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Chebotar VK, Gancheva MS, Chizhevskaya EP, Keleinikova OV, Baganova ME, Zaplatkin AN, Husainov KA. Whole-genome sequence of Paenibacillus amylolyticus strain W018, isolated from Triticum aestivum L. seeds, obtained using nanopore sequencing. Microbiol Resour Announc 2023; 12:e0068723. [PMID: 37747250 PMCID: PMC10586160 DOI: 10.1128/mra.00687-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 08/22/2023] [Indexed: 09/26/2023] Open
Abstract
In this study, we performed nanopore sequencing of the genome of Paenibacillus amylolyticus strain W018, isolated from the seeds of winter wheat, cv. Bezostaya 100. The genome size is 7.07 Mb, with a GC content of 45.8%, and contains 8,190 genes.
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Affiliation(s)
- Vladimir K. Chebotar
- Laboratory of Microbial Technology, All-Russian Research Institute for Agricultural Microbiology, St. Petersburg, Pushkin, Russia
| | - Maria S. Gancheva
- Laboratory of Microbial Technology, All-Russian Research Institute for Agricultural Microbiology, St. Petersburg, Pushkin, Russia
- Department of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, St. Petersburg, Russia
| | - Elena P. Chizhevskaya
- Laboratory of Microbial Technology, All-Russian Research Institute for Agricultural Microbiology, St. Petersburg, Pushkin, Russia
| | - Oksana V. Keleinikova
- Laboratory of Microbial Technology, All-Russian Research Institute for Agricultural Microbiology, St. Petersburg, Pushkin, Russia
| | - Maria E. Baganova
- Laboratory of Microbial Technology, All-Russian Research Institute for Agricultural Microbiology, St. Petersburg, Pushkin, Russia
| | - Alexander N. Zaplatkin
- Laboratory of Microbial Technology, All-Russian Research Institute for Agricultural Microbiology, St. Petersburg, Pushkin, Russia
| | - Kharon A. Husainov
- Laboratory of Generic and Selection of Microorganisms, Chechen Research Institute of Agriculture, Chechen Republic, Russia
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Chebotar VK, Chizhevskaya EP, Baganova ME, Keleinikova OV, Yuzikhin OS, Zaplatkin AN, Khonina OV, Kostitsin RD, Lapenko NG. Endophytes from Halotolerant Plants Aimed to Overcome Salinity and Draught. Plants (Basel) 2022; 11:2992. [PMID: 36365445 PMCID: PMC9658857 DOI: 10.3390/plants11212992] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 10/30/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
The aim of our research was to study the endosphere of four halophytic plants: Salicornia europaea L., Salsola australis (R.Br.), Bassia sedoides (Pall.) and Kochia prostrata (L.) Schrad. from arid and saline areas of the Stavropol Territory, Russia. In total, 28 endophyte strains were isolated from the roots and stems of these halophytic plants. Most of the isolates (23 out of 28) were identified as Bacillus sp. while others belonged to the genera Oceanobacillus, Paenibacillus, Pantoea, Alcaligenes and Myroides. Three strains of Bacillus sp. (Se5R, Se1-1R, and Se1-3S), isolated from the S. europaea were capable of growth at 55 °C and in 10% of NaCl. Strains Se1-4S, Kp20-2S, and Bs11-2S Bacillus sp. (isolated from the S. australis, K. prostrata and B. sedoides, respectively) demonstrated strong plant growth promoting activity: 85-265% over control lettuce plants and a high degree of growth suppression (59.1-81.2%) of pathogenic fungi Fusarium oxysporum, Bipolaris sorokiniana and Rhizoctonia solani. Selected strains can be promising candidates for the development of bioinoculants to facilitate salt soil phytoremediation and be beneficial for mitigating the salt stress to the plants growing in salt-affected habitats.
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Affiliation(s)
- Vladimir K. Chebotar
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo hwy, 3, Pushkin, St. Petersburg 196608, Russia
| | - Elena P. Chizhevskaya
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo hwy, 3, Pushkin, St. Petersburg 196608, Russia
| | - Maria E. Baganova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo hwy, 3, Pushkin, St. Petersburg 196608, Russia
| | - Oksana V. Keleinikova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo hwy, 3, Pushkin, St. Petersburg 196608, Russia
| | - Oleg S. Yuzikhin
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo hwy, 3, Pushkin, St. Petersburg 196608, Russia
| | - Alexander N. Zaplatkin
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo hwy, 3, Pushkin, St. Petersburg 196608, Russia
| | - Olesya V. Khonina
- North Caucasus Federal Scientific Agrarian Center, Federal State Budgetary Scientific Institution, Stavropol Territory, Nikonova str., 49, Shpakovsky District, Mikhailovsk 356241, Russia
| | - Roman D. Kostitsin
- North Caucasus Federal Scientific Agrarian Center, Federal State Budgetary Scientific Institution, Stavropol Territory, Nikonova str., 49, Shpakovsky District, Mikhailovsk 356241, Russia
| | - Nina G. Lapenko
- North Caucasus Federal Scientific Agrarian Center, Federal State Budgetary Scientific Institution, Stavropol Territory, Nikonova str., 49, Shpakovsky District, Mikhailovsk 356241, Russia
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