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Al-Sayegh MA, Mahmood SR, Khair SBA, Xie X, El Gindi M, Kim T, Almansoori A, Percipalle P. β-actin contributes to open chromatin for activation of the adipogenic pioneer factor CEBPA during transcriptional reprograming. Mol Biol Cell 2020; 31:2511-2521. [PMID: 32877276 PMCID: PMC7851876 DOI: 10.1091/mbc.e19-11-0628] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Adipogenesis is regulated by a cascade of signals that drive transcriptional reprogramming in adipocytes. Here, we report that nuclear actin regulates the chromatin states that establish tissue- specific expression during adipogenesis. To study the role of β-actin in adipocyte differentiation, we conducted RNA sequencing on wild-type and β-actin knockout mouse embryonic fibroblasts (MEFs) after reprograming to adipocytes. We found that β-actin depletion affects induction of several adipogenic genes during transcriptional reprograming. This impaired regulation of adipogenic genes is linked to reduced expression of the pioneer factor Cebpa and is rescued by reintroducing NLS-tagged β-actin. ATAC-Seq in knockout MEFs revealed that actin-dependent reduction of Cebpa expression correlates with decreased chromatin accessibility and loss of chromatin association of the ATPase Brg1. This, in turn, impairs CEBPB's association with its Cebpa promoter-proximal binding site during adipogenesis. We propose a role for the nuclear β-actin pool in maintaining open chromatin for transcriptional reprogramming during adipogenic differentiation.
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Affiliation(s)
- M A Al-Sayegh
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates
| | - S R Mahmood
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates.,Department of Biology, New York University, New York, NY 10003
| | - S B Abul Khair
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates
| | - X Xie
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates
| | - M El Gindi
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates
| | - T Kim
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates
| | - A Almansoori
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates
| | - P Percipalle
- Biology Program, Science Division, New York University Abu Dhabi (NYUAD), Abu Dhabi, United Arab Emirates.,Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91 Stockholm, Sweden
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Montague TG, Almansoori A, Gleason EJ, Copeland DS, Foley K, Kraves S, Alvarez Saavedra E. Gene expression studies using a miniaturized thermal cycler system on board the International Space Station. PLoS One 2018; 13:e0205852. [PMID: 30379894 PMCID: PMC6209215 DOI: 10.1371/journal.pone.0205852] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Accepted: 10/02/2018] [Indexed: 02/02/2023] Open
Abstract
The distance and duration of human spaceflight missions is set to markedly increase over the coming decade as we prepare to send astronauts to Mars. However, the health impact of long-term exposure to cosmic radiation and microgravity is not fully understood. In order to identify the molecular mechanisms underpinning the effects of space travel on human health, we must develop the capacity to monitor changes in gene expression and DNA integrity in space. Here, we report successful implementation of three molecular biology procedures on board the International Space Station (ISS) using a miniaturized thermal cycler system and C. elegans as a model organism: first, DNA extraction–the initial step for any type of DNA analysis; second, reverse transcription of RNA to generate complementary DNA (cDNA); and third, the subsequent semi-quantitative PCR amplification of cDNA to analyze gene expression changes in space. These molecular procedures represent a significant expansion of the budding molecular biology capabilities of the ISS and will permit more complex analyses of space-induced genetic changes during spaceflight missions aboard the ISS and beyond.
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Affiliation(s)
- Tessa G. Montague
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, United States of America
| | | | | | | | - Kevin Foley
- Boeing, Houston, TX, United States of America
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Duan C, Tong J, Shang M, Nikodemski S, Sanders M, Ricote S, Almansoori A, OHayre R. Readily processed protonic ceramic fuel cells with high performance at low temperatures. Science 2015. [DOI: 10.1126/science.aab3987] [Citation(s) in RCA: 703] [Impact Index Per Article: 78.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Clark D, Tong J, Morrissey A, Almansoori A, Reimanis I, O'Hayre R. Anomalous low-temperature proton conductivity enhancement in a novel protonic nanocomposite. Phys Chem Chem Phys 2014; 16:5076-80. [DOI: 10.1039/c4cp00468j] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel protonic ceramic composite is synthesized that comprises nanoscale nickel metal films at the grain boundaries of the proton-conducting ceramic, BaCe0.7Zr0.1Y0.1Yb0.1O3−δ. Low-temperature proton conductivity improvements of up to 46× are observed.
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Affiliation(s)
- D. Clark
- Department of Metallurgical and Materials Engineering
- Colorado School of Mines
- Golden, USA
| | - J. Tong
- Department of Metallurgical and Materials Engineering
- Colorado School of Mines
- Golden, USA
| | - A. Morrissey
- Department of Metallurgical and Materials Engineering
- Colorado School of Mines
- Golden, USA
| | - A. Almansoori
- Department of Chemical Engineering
- The Petroleum Institute
- Abu Dhabi, United Arab Emirates
| | - I. Reimanis
- Department of Metallurgical and Materials Engineering
- Colorado School of Mines
- Golden, USA
| | - R. O'Hayre
- Department of Metallurgical and Materials Engineering
- Colorado School of Mines
- Golden, USA
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Saif Y, Almansoori A, Elkamel A. Wastewater Minimization in Pulp and Paper Industries through Energy-Efficient Reverse-Osmosis Membrane Processes. Chem Eng Technol 2013. [DOI: 10.1002/ceat.201200445] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Alhajri I, Saif Y, Elkamel A, Almansoori A. OVERALL INTEGRATION OF THE MANAGEMENT OF H2AND CO2WITHIN REFINERY PLANNING USING RIGOROUS PROCESS MODELS. CHEM ENG COMMUN 2013. [DOI: 10.1080/00986445.2012.691922] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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