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Majumder KR, Shrivastava A, Maitra D, Siddique MI, Rahman MM. Fish-tail Plasty: A Secure Technique to Enhance Cosmesis at the Lateral End of Mastectomy Scar and Prevent Dog Ear. Mymensingh Med J 2024; 33:160-167. [PMID: 38163788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2024]
Abstract
Mastectomy is very common surgical procedure for breast cancer. The closure of transverse elliptical mastectomy incisions has been represented with numerous modifications since 1915. The technical challenge is to avoid a fold of skin dogging laterally ("dog-ear"). This might lead to off future discomfort and poor cosmetic result. However, various surgical techniques are reported to tackle this lateral dog ear, there is no standardized technique. We therefore conduct a systematic review of the surgical techniques with the aim of comparing the merits and limitations of every technique. The comparative study among 72 patients was performed in Bangabandhu Sheikh Mujib Medical University, Anower Khan Modern Medical College & Hospital and Care Medical College & Hospital, Bangladesh from July 2017 to January 2020. Patients were divided randomly into two groups: Group I underwent fishtail technique group (36 patients), Group II underwent modified suturing technique group (36 patients). The follow up periods were 1 month and 3 months post-operatively for determination of the presence of dog ear and patient's satisfaction regarding cosmetic outcome and comfortability. Incidence of dog ear in fish-tail plasty group patients was less than that for Group II yet the difference is not significant less (p value 0.001). In consideration of patient satisfaction, doctor satisfaction and patient comfortability were significantly higher in Group I than Group II (p value 0.476 and 0.001 respectively). Fish-tail plasty was significantly better in patient satisfaction, comfortability and doctor satisfaction than modified suturing techniques and it might be recommended following mastectomy in obese patients for improving cosmesis and avoiding discomfort due to redundant skin.
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Affiliation(s)
- K R Majumder
- Dr Krisna Rani Majumder, Associate Professor of Surgical Oncology, Department of Surgery, Bangabandhu Sheikh Mujib Medical University (BSMMU), Dhaka, Bangladesh; E-mail:
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Jain N, Chaudhary P, Shrivastava A, Jindal R. Layered Sheath-Assisted Dissection and Retrieval of Stuck Port Catheters: A Single-Center Experience. Vasc Specialist Int 2023; 39:31. [PMID: 37905385 PMCID: PMC10616690 DOI: 10.5758/vsi.230066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 09/14/2023] [Accepted: 10/10/2023] [Indexed: 11/02/2023] Open
Abstract
Chemoports are often required for oncological patients requiring repeated blood draws and long-term drug therapy. However, complications such as dislodgement, fracture, thrombosis, and venous occlusion may occur if the ports remain unremoved when not in use. Nonetheless, existing techniques require multiple accesses or release of the stuck catheter tip to retrieve the catheter, making the procedure inconvenient. We present our experience with a technique using the Bard Denali inferior vena cava filter retrieval kit to remove a stuck or fractured chemoport catheter through a single vascular access. The technique was performed in two female patients with satisfactory results (complete retrieval of broken chemoports) and an event-free follow-up period. The entire procedure was completed within 15-30 minutes with fluoroscopic time under two minutes. The technique allows for better case management by simplifying the procedure, reducing radiation, and improving workflow efficiency in the operating room.
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Affiliation(s)
- Nityanand Jain
- Faculty of Medicine, Riga Stradinš University, Riga, Latvia
- Department of Vascular Surgery, Fortis Hospital Mohali, Punjab, India
| | - Piyush Chaudhary
- Department of Vascular Surgery, Fortis Hospital Mohali, Punjab, India
| | - Amit Shrivastava
- Department of Vascular Surgery, Fortis Hospital Mohali, Punjab, India
| | - Ravul Jindal
- Department of Vascular Surgery, Fortis Hospital Mohali, Punjab, India
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Shrivastava A, Jindal G, Khan L, Chaube R. A Rare Case of Cystic Artery Pseudoaneurysm because of Cholecystitis Managed with Non-invasive Technique. Middle East J Dig Dis 2023; 15:285-288. [PMID: 38523887 PMCID: PMC10955983 DOI: 10.34172/mejdd.2023.359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 09/25/2023] [Indexed: 03/26/2024] Open
Abstract
Cystic artery pseudoaneurysm due to acute on chronic cholecystitis is very rare in spite of the high incidence of cholecystitis, and very few cases have been reported in the literature. Most of the pseudoaneurysms are symptomatic at the time of diagnosis due to rupture. Very few cases of unruptured cystic artery pseudoaneurysm caused by cholecystitis have been reported in the literature. We present a case of a 41-year-old man who presented in the Intervention Radiology Department with the diagnosis of cholecystitis and cystic artery pseudoaneurysm. Three treatment options are available for such cases. The first approach is surgical clipping of the pseudoaneurysm and cholecystectomy. The second approach is endovascular management of pseudoaneurysm and cholecystectomy. We chose the third approach, endovascular management of the pseudoaneurysm, percutaneous cholecystostomy, and elective laparoscopic cholecystectomy.
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Affiliation(s)
| | - Gunjan Jindal
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
| | - Lukman Khan
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
| | - Rohan Chaube
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
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Jain N, Chaudhary P, Shrivastava A, Kaur T, Kaur S, Brar HS, Jindal R. Thrombosis with Thrombocytopenia Syndrome (TTS) After ChAdOx1 nCoV-19 Immunization: An Investigative Case Report. Am J Case Rep 2023; 24:e938878. [PMID: 36932639 PMCID: PMC10037117 DOI: 10.12659/ajcr.938878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
BACKGROUND Thrombosis with thrombocytopenia syndrome (TTS), including vaccine-induced immune thrombotic thrombocytopenia (VITT), is an extremely rare adverse effect, mostly seen after initial vaccination with the viral vector-based AstraZeneca-Oxford COVID-19 vaccine. It is characterized by mild to severe thrombocytopenia and venous or arterial thrombosis. CASE REPORT Herein, we present a case of an 18-year-old male patient who developed Level 1 TTS (probable VITT) eight days after immunization with the ChADOx1 nCOV-19 vaccine (Covishield; AZ-Oxford). Initial investigations revealed severe thrombocytopenia, hemiparesis, and intracranial hemorrhage, after which the patient was treated conservatively. However, a decompressive craniotomy was performed later due to patient deterioration. One week after surgery, the patient developed bilious vomiting, lower-gastrointestinal bleeding, and abdominal distension. An abdominal CT scan was performed that showed thrombosis of the portal vein with occlusion of the left iliac vein. The patient underwent an exploratory laparotomy followed by resection and anastomosis of the small bowel due to massive gut gangrene. Due to persistent thrombocytopenia after surgery, intravenous immune globulin (IVIG) was administered. The platelet count increased thereafter, and the patient stabilized. He was discharged on the 33rd day after admission and was followed up for a year. No post-hospitalization complications were observed in the follow-up period. CONCLUSIONS Although vaccines have been proven to be highly safe and effective to end the Coronavirus Disease 2019 (COVID-19) caused pandemic, there is still a small risk of developing rare complications, including TTS and VITT. Early diagnosis and prompt intervention are key for patient management.
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Affiliation(s)
- Nityanand Jain
- Faculty of Medicine, Riga Stradinš University, Riga, Latvia
- Statistics Unit, Riga Stradinš University, Riga, Latvia
| | - Piyush Chaudhary
- Department of Vascular Surgery, Fortis Hospital Mohali, Sahibzada Ajit Singh Nagar (Mohali), Punjab, India
| | - Amit Shrivastava
- Department of Vascular Surgery, Fortis Hospital Mohali, Sahibzada Ajit Singh Nagar (Mohali), Punjab, India
| | - Taranvir Kaur
- Department of Vascular Surgery, Fortis Hospital Mohali, Sahibzada Ajit Singh Nagar (Mohali), Punjab, India
| | - Shabjot Kaur
- Department of Vascular Surgery, Fortis Hospital Mohali, Sahibzada Ajit Singh Nagar (Mohali), Punjab, India
| | - Harmandeep Singh Brar
- Department of Vascular Surgery, Fortis Hospital Mohali, Sahibzada Ajit Singh Nagar (Mohali), Punjab, India
| | - Ravul Jindal
- Department of Vascular Surgery, Fortis Hospital Mohali, Sahibzada Ajit Singh Nagar (Mohali), Punjab, India
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Shrivastava A, Jindal G, Kalpdev A, Sethi S, Rastogi E, Aggarwal C, Amin KT, Sethi A. Role of MRI and FIGO Staging in Evaluation of Fibroids - A Pictorial Review. Maedica (Bucur) 2023; 18:121-126. [PMID: 37266473 PMCID: PMC10231166 DOI: 10.26574/maedica.2023.18.1.121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Uterine fibroids are the most common gynaecologic malignancy, but only 20% of women need treatment to relieve their symptoms. The management of fibroids has changed from open to laparoscopic hysterectomy, myomectomy and minimal invasive techniques such as uterine artery embolization and ablation. Magnetic resonance imaging (MRI) is considered the best modality in the diagnosis, characterization and number of fibroids as well as for accessing extrauterine relationships, associated diseases; it also helps in planning, choosing and prognosis of treatment options. Traditionally, uterine fibroids were classified according to their location as submucosal, intramural or subserosal. However, for minimally invasive techniques, the relation of the fibroid with the endometrium, the degree of fibroid extension in the myometrium and the pedunculated nature of the fibroid are required before the procedure. The FIGO classification system was created to describe and classify fibroid locations in a systematic and consistent manner with suitable communication to the referring doctor. We are providing an array of clinical symptoms, MRI images, and surgical approaches on the basis of FIGO classification and associated important points to diagnosis and clinical implications.
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Affiliation(s)
- Amit Shrivastava
- Department of Vascular surgery, Fortis Hospital, Mohali, Punjab, India
| | - Gunjan Jindal
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
| | - Arun Kalpdev
- Department of Obstetrics and Gynaecology, MMIMSR, Mullana, Haryana, India
| | - Sanjay Sethi
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
| | - Ekta Rastogi
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
| | - Chahat Aggarwal
- Department of Radiodiagnosis, MMIMSR, Mullana, Haryana, India
| | | | - Aaftab Sethi
- Government Medical College, Patiala, Punjab, India
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Mishra A, Mishra A, Shrivastava A. GC-MS based untargeted approach reveals metabolic perturbation in Tamoxifen resistant breast cancer cells. Eur J Cancer 2022. [DOI: 10.1016/s0959-8049(22)01554-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Jindal G, Sethi A, Bhargarva K, Sethi S, Mittal A, Singh U, Singh S, Shrivastava A. Imaging findings in invasive rhino-orbito-cerebral mucormycosis in post-COVID-19 patients. Proc AMIA Symp 2022; 35:32-34. [PMID: 34970028 DOI: 10.1080/08998280.2021.1981100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
Rhino-orbito-cerebral mucormycosis (ROCM) is a life-threatening addition to the COVID-19 disease spectrum and is caused by an angioinvasive saprophytic opportunistic fungus. Early diagnosis is important to avoid disease spread and mortality. Contrast-enhanced magnetic resonance imaging plays a major role in detection of intraorbital and intracranial extension. We present imaging findings of 15 patients with post-COVID-19 rhino-orbito-cerebral mucormycosis who were diagnosed with invasive sinus mucormycosis at our institution and are currently undergoing treatment. All patients were diabetics, and 80% had a history of steroid intake during the course of COVID-19 treatment. There was a male preponderance (73.3%). The maxillary sinus was most commonly involved (86.7%). Orbital and intracranial invasion was seen in 73.3% and 60% of patients, respectively. The presence of retroantral, facial, infratemporal, and orbital fat stranding was an early sign of extrasinus spread. Other common sites of extrasinus involvement were the orbit and face, followed by the orbital apex, masticator space, pterygopalatine fossa, bone, skull base, cavernous sinus, brain, and internal carotid artery. In conclusion, early detection of extrasinus spread of mucormycosis by imaging is important so that aggressive treatment can be given and mortality can be reduced.
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Affiliation(s)
- Gunjan Jindal
- Department of Radiodiagnosis, Maharishi Markandeshwar Institute of Medical Sciences and Research, Haryana, India
| | - Aaftab Sethi
- Government Medical College, Patiala, Punjab, India
| | - Kanika Bhargarva
- Department of Radiodiagnosis, Maharishi Markandeshwar Institute of Medical Sciences and Research, Haryana, India
| | - Sanjay Sethi
- Department of Radiodiagnosis, Maharishi Markandeshwar Institute of Medical Sciences and Research, Haryana, India
| | - Amit Mittal
- Department of Radiodiagnosis, Maharishi Markandeshwar Institute of Medical Sciences and Research, Haryana, India
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Brown MJ, Patel P, Nash E, Dikid T, Blanton C, Forsyth JE, Fontaine R, Sharma P, Keith J, Babu B, Vaisakh TP, Azarudeen MJ, Riram B, Shrivastava A. Prevalence of elevated blood lead levels and risk factors among children living in Patna, Bihar, India 2020. PLOS Glob Public Health 2022; 2:e0000743. [PMID: 36962532 PMCID: PMC10021519 DOI: 10.1371/journal.pgph.0000743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 08/15/2022] [Indexed: 03/26/2023]
Abstract
Childhood lead exposure remains a key health concern for officials worldwide, contributing some 600,000 new cases of intellectually disabled children annually. Most children affected by high exposure to lead live in low- and middle-income countries. The leaded gasoline phase out in India was completed in 2000. Yet, in 2020, an estimated 275 million children aged 0 to 9 years had blood lead levels (BLLs) ≥ 5 μg/dL known to adversely affect intelligence and behavior. Lead sources reported in India include spices, cookware, paint, traditional medicines and cosmetics, and lead-acid battery recycling and repair. However, their relative contribution has not been characterized. More than 200 lead pollution sites related to battery recycling and repair activities were identified in Bihar and Jharkhand, India. Ninety percent of the recycling sites had soil lead concentrations exceeding the US Environmental Protection Agency's standards. We compared blood and environmental lead levels in two groups of children in Patna, Bihar. Households in proximity to battery recycling operations (Proximal n = 67) versus households distal to these operations (Distal n = 68). The average age of children was 40 months; 46% were female. Overall, the geometric mean (GM) BLL was 11.6 μg/dL. GM BLLs of children in Proximal and Distal households were not significantly different (10.2 μg/dL vs. 13.1 μg/dL respectively; p≤0.07). About 87% children, 56 Proximal and 62 Distal had BLLs ≥5 μg/dl. Lead concentrations in environmental samples were significantly higher in Proximal households (soil mean 9.8 vs. 1.6 μg/ft2; dust mean 52.9 vs. 29.9 μg/ft2 p<0.001; Proximal vs. Distal respectively) whereas concentrations in all spices were higher in Distal households (mean 46.8 vs 134.5 ppm p<0.001; Proximal vs. Distal respectively), and turmeric (mean 59.4 vs. 216.9 ppm Proximal vs. Distal respectively). In multivariate analyses for all children lead in spices and turmeric and number of rooms in the house were significant while for the Proximal group only lead in spices remained in the model. The predictive value of these models was poor. For the Distal group, a model with lead concentration in spices, turmeric and soil and number of rooms in the house was a much better fit. Of the 34 water samples collected, 7 were above the Indian standard of 10 ppb for lead in drinking water (2 in the Proximal area, 5 in the Distal area). Children in Patna, Bihar, India are exposed to multiple sources of lead, with lead levels in house dust and loose, locally sourced spices the most likely to increase blood lead levels. A holistic approach to blood lead testing and source identification and remediation are necessary to prevent lead exposure.
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Affiliation(s)
- M J Brown
- Department of Social and Behavioral Sciences, Harvard Chan School of Public Health, Boston, Massachusetts, United States of America
| | - P Patel
- National Center for Disease Control India, New Delhi, India
| | - E Nash
- Pure Earth, New York, New York, United States of America
| | - T Dikid
- National Center for Disease Control India, New Delhi, India
| | - C Blanton
- Division of Global Health Protection, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
| | - J E Forsyth
- Stanford Woods Institute for the Environment, Stanford University, Stanford, California, United States of America
| | - R Fontaine
- Division of Global Health Protection, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
| | - P Sharma
- Pure Earth, New York, New York, United States of America
| | - J Keith
- Pure Earth, New York, New York, United States of America
| | - B Babu
- National Center for Disease Control India, New Delhi, India
| | - T P Vaisakh
- National Center for Disease Control India, New Delhi, India
| | - M J Azarudeen
- National Center for Disease Control India, New Delhi, India
| | - B Riram
- National Center for Disease Control India, New Delhi, India
| | - A Shrivastava
- National Center for Disease Control India, New Delhi, India
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Tauber J, Tingley J, Rabbanifar S, Bitners A, Shrivastava A, Skae C. Experiences and perceptions from non-internal medicine clinicians deployed to COVID-19 units. Eur Psychiatry 2021. [PMCID: PMC9480023 DOI: 10.1192/j.eurpsy.2021.1778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
IntroductionWhen New York City became an epicenter of the COVID-19 pandemic, healthcare workers from an array of specialties were deployed to work on general medicine units with limited time for clinical retraining.ObjectivesThis study assesses the subjective experience and perceived preparedness of a cohort of non-internal medicine clinicians who were deployed to assist with inpatient management of patients with COVID-19 in the Spring of 2020.MethodsAn online survey was distributed to clinicians (residents, fellows, attendings, nurse practitioners, and physician assistants) who cared for patients in roles outside their usual specialties during the pandemic at the Montefiore Health System in the Bronx, NY.Results85/169 (50.3%) clinicians responded. 16.5% reported strong feelings of preparedness prior to deployment (≥7/10 Likert scale). ‘Access to appropriate and efficient review materials prior to deployment’ was ranked as 6/10, overall level of stress as 8/10 and concern for contracting COVID-19 while deployed as 8/10. Responses regarding ‘general feelings of preparedness’ had a weak negative association with ‘feelings of frustration about one’s circumstance’ (r= -0.39, p<0.001). Weak negative associations were found between feelings of ‘access to adequate review materials’ and ‘overall stress levels’ (r= -0.31, p<0.001). A moderate positive association was found between ‘feelings of access to adequate review materials’ and ‘feeling on top of one’s work responsibilities’ (r= 0.40, p< 0.001).ConclusionsThe majority of respondents did not feel adequately prepared to care for patients with COVID-19 prior to deployment and had both high stress levels and fear of contracting COVID-19 in the first wave of the pandemic.DisclosureNo significant relationships.
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Jaafar M, Shrivastava A, Rai Bose S, Felipe-Sotelo M, Ward N. Transfer of arsenic, manganese and iron from water to soil and rice plants: An evaluation of changes in dietary intake caused by washing and cooking rice with groundwater from the Bengal Delta, India. J Food Compost Anal 2021. [DOI: 10.1016/j.jfca.2020.103748] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Shrivastava A, Doda DK, Bundele M. Economic and environmental impact analyses of hybrid generation system in respect to Rajasthan. Environ Sci Pollut Res Int 2021; 28:3906-3912. [PMID: 32656752 DOI: 10.1007/s11356-020-10041-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Accepted: 07/06/2020] [Indexed: 06/11/2023]
Abstract
This paper intends to show the aspects of an environment-friendly hybrid energy system (HES) for reducing the electrical power problems in remote areas and providing pollution-free energy. It draws attention towards renewable HES to attain a consistent and independent system. Optimization of the apparatus extent, step-up asset price, and effects on environment is also taken care of. The HES is capable of supply green electricity to population living in remote areas, where supply from grid is a major hurdle. In the proposed HES, the main proportion of power has been generated from the solar panels and wind turbines, while the batteries act as backup power source. The optimization of designed system has been done using the HOMER software. The design and application of the proposed method is a novel solution for the selected location. The results obtained from simulation justify that the proposed HES acts as viable solution for electrification of remote areas which are not connected from the grid.
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Affiliation(s)
- Amit Shrivastava
- Department of Electrical Engineering, Poornima University, Sitapura, Jaipur, Rajasthan, 302022, India.
| | - Devendra Kumar Doda
- Department of Electrical Engineering, Poornima University, Sitapura, Jaipur, Rajasthan, 302022, India
| | - Mahesh Bundele
- Department of Computer Engineering, Poornima College of Engineering, Sitapura, Jaipur, Rajasthan, 302022, India
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Dobriyal N, Sagarika P, Shrivastava A, Verma AK, Islam Z, Gupta P, Mochizuki T, Abe F, Sahi C. Over-expression of Caj1, a plasma membrane associated J-domain protein in Saccharomyces cerevisiae, stabilizes amino acid permeases. Biochim Biophys Acta Biomembr 2020; 1862:183435. [PMID: 32777224 DOI: 10.1016/j.bbamem.2020.183435] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 07/08/2020] [Accepted: 07/27/2020] [Indexed: 11/17/2022]
Abstract
Hsp70: J-domain protein (JDP) machines, along with the cellular protein degradation systems play a central role in regulating cellular proteostasis. An equally robust surveillance system operates at the plasma membrane too that affects proper sorting, stability as well as the turnover of membrane proteins. Although plausible, a definitive role of the Hsp70: JDP machine in regulating the stability of plasma membrane proteins is not well understood in Saccharomyces cerevisiae. Here we show that a moderate over-expression of Caj1, one of the thirteen JDPs residing in the nucleo-cytosolic compartment of S. cerevisiae reduced the cold sensitivity of tryptophan auxotrophic yeast cells by stabilizing tryptophan permeases, Tat1 and Tat2 in a J-domain dependent manner. Concomitantly, higher Caj1 levels also caused slow growth and increased plasma membrane damage at elevated temperatures possibly due to the stabilization of thermolabile plasma membrane proteins. Finally, we show that although majorly cytosolic, Caj1 also co-localizes with the membrane dye FM4-64 at the cellular periphery suggesting that Caj1 might interact with the plasma membrane. Based on the results presented in this study, we implicate the Hsp70: Caj1 chaperone machine in regulating the stability or turnover of plasma membrane proteins in budding yeast.
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Affiliation(s)
- N Dobriyal
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - P Sagarika
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - A Shrivastava
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - A K Verma
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - Z Islam
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - P Gupta
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India
| | - T Mochizuki
- Molecular Genetic Research, Department of Chemistry and Biological Science, College of Science and Engineering, Aoyama Gakuin University, 5-10-1 Fuchinobe, Chuo-ku, Sagamihara 252-5258, Japan
| | - F Abe
- Molecular Genetic Research, Department of Chemistry and Biological Science, College of Science and Engineering, Aoyama Gakuin University, 5-10-1 Fuchinobe, Chuo-ku, Sagamihara 252-5258, Japan
| | - C Sahi
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India.
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Perfetto L, Pastrello C, Del-Toro N, Duesbury M, Iannuccelli M, Kotlyar M, Licata L, Meldal B, Panneerselvam K, Panni S, Rahimzadeh N, Ricard-Blum S, Salwinski L, Shrivastava A, Cesareni G, Pellegrini M, Orchard S, Jurisica I, Hermjakob HH, Porras P. The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions. bioRxiv 2020:2020.06.16.153817. [PMID: 32587962 PMCID: PMC7310617 DOI: 10.1101/2020.06.16.153817] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
The current Coronavirus Disease 2019 (COVID-19) pandemic, caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), has spurred a wave of research of nearly unprecedented scale. Among the different strategies that are being used to understand the disease and develop effective treatments, the study of physical molecular interactions enables studying fine-grained resolution of the mechanisms behind the virus biology and the human organism response. Here we present a curated dataset of physical molecular interactions, manually extracted by IMEx Consortium curators focused on proteins from SARS-CoV-2, SARS-CoV-1 and other members of the Coronaviridae family. Currently, the dataset comprises over 2,200 binarized interactions extracted from 86 publications. The dataset can be accessed in the standard formats recommended by the Proteomics Standards Initiative (HUPO-PSI) at the IntAct database website ( www.ebi.ac.uk/intact ), and will be continuously updated as research on COVID-19 progresses.
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Affiliation(s)
- L Perfetto
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - C Pastrello
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
| | - N Del-Toro
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - M Duesbury
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
- UCLA-DOE Institute, UCLA, Los Angeles, USA
| | - M Iannuccelli
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy
| | - M Kotlyar
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
| | - L Licata
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy
| | - B Meldal
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - K Panneerselvam
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - S Panni
- Department of Biology, Ecology and Earth Sciences, Università della Calabria, Rende, Italy
| | - N Rahimzadeh
- UCLA-DOE Institute, UCLA, Los Angeles, USA
- Providence John Wayne Cancer Institute, Santa Monica, USA
| | - S Ricard-Blum
- Univ Lyon, University Claude Bernard Lyon 1, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry (ICBMS), UMR 5246, F-69622 Villeurbanne, France
| | | | - A Shrivastava
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - G Cesareni
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy
| | - M Pellegrini
- Department of Molecular, Cell and Developmental Biology, UCLA, Los Angeles, USA
| | - S Orchard
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - I Jurisica
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
- Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, ON, Canada
| | - H H Hermjakob
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - P Porras
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
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14
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Gupta G, Krishnamoorthy H, Garai A, Mazumdar A, Nanal V, Shrivastava A, Pillay RG. Thermal neutron-induced γ-ray background in 124Sn. Appl Radiat Isot 2020; 158:108923. [PMID: 32174381 DOI: 10.1016/j.apradiso.2019.108923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 09/23/2019] [Accepted: 10/02/2019] [Indexed: 10/25/2022]
Abstract
The thermal neutron-induced gamma-ray background in 124Sn is investigated in connection with neutrinoless double beta decay (0νββ) studies in 124Sn. For this purpose, a 99.26% enriched 124Sn sample was irradiated with a thermal neutron fluence of 3×1015/cm2 in the Dhruva reactor at the Bhabha Atomic Research Centre, Mumbai. The gamma ray spectra of the irradiated sample were measured in a low background counting setup to study both long-lived and short-lived activities. The present data give an independent measurement of the half-life of 125Sn*(32+) and 125Sn(112-) as 10.01(8) min and 9.63(2) d, respectively. The impact of the observed high-energy gamma rays and the residual activity due to 125Sb, on the background in the region of interest around the Qββ value of 124Sn (~2.291 MeV) is discussed.
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Affiliation(s)
- G Gupta
- Department of Nuclear and Atomic Physics, Tata Institute of Fundamental Research, Mumbai, 400005, India
| | - H Krishnamoorthy
- India-based Neutrino Observatory, Tata Institute of Fundamental Research, Mumbai, 400005, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai, 400094, India
| | - A Garai
- India-based Neutrino Observatory, Tata Institute of Fundamental Research, Mumbai, 400005, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai, 400094, India
| | - A Mazumdar
- India-based Neutrino Observatory, Tata Institute of Fundamental Research, Mumbai, 400005, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai, 400094, India
| | - V Nanal
- Department of Nuclear and Atomic Physics, Tata Institute of Fundamental Research, Mumbai, 400005, India.
| | - A Shrivastava
- Homi Bhabha National Institute, Anushaktinagar, Mumbai, 400094, India; Nuclear Physics Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - R G Pillay
- Department of Nuclear and Atomic Physics, Tata Institute of Fundamental Research, Mumbai, 400005, India
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15
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Shukla A, Sharda B, Sharma S, Bhardwaj S, Kailash U, Kalani R, Satyanarayana L, Shrivastava A. Association Between Serum Testosterone and Serum PSA Among Men With and Without Partial Androgen Deficiency. Indian J Clin Biochem 2020; 35:127-131. [PMID: 32071506 DOI: 10.1007/s12291-018-0785-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 07/25/2018] [Indexed: 01/28/2023]
Abstract
Serum prostatic specific antigen (PSA) and serum testosterone levels share an undefined relationship with each other, with many conflicting studies showing both positive and negative correlation between them. Our aim was to assess association between serum PSA and serum testosterone in healthy men with normal testosterone levels and men with partial androgen deficiency (PADAM). A cross sectional study was conducted at a teaching hospital setting where serum testosterone and aging male symptom scale (AMS) scores along with PSA were studied in 255 men (> 50 years) with and without PADAM. Mean total testosterone and serum PSA was 9.35 ± 1.33 nmol/L, 1.96 ± 0.76 ng/mL in males with PADAM and 15.30 ± 1.95 nmol/L, 1.85 ± 0.73 ng/mL respectively in males without PADAM. No significant relationship was observed between serum PSA and serum testosterone levels among healthy males irrespective of PADAM in the study population. We suggest, there is no need to adjust PSA values for biopsy decisions according to testosterone levels.
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Affiliation(s)
- A Shukla
- Department of Biochemistry, Rajiv Gandhi Super Specialty Hospital, Dilshad Garden, New Delhi, 110093 India
| | - B Sharda
- 2Department of Urology, RG Stone Urology and Laparoscopy Hospital, F-12, East of Kailash, New Delhi, 110065 India
| | - S Sharma
- 3Department of Biochemistry, All India Institute of Medical Sciences, Jodhpur, Basni Industrial Area, Phase-2, Jodhpur, Rajasthan 342005 India
| | - S Bhardwaj
- Department of Biochemistry, Rajiv Gandhi Super Specialty Hospital, Dilshad Garden, New Delhi, 110093 India
| | - U Kailash
- 4ICMR-National Institute of Cancer Prevention and Research, Sector-39, Noida, Uttar Pradesh 201301 India
| | - R Kalani
- Department of Biochemistry, Rajiv Gandhi Super Specialty Hospital, Dilshad Garden, New Delhi, 110093 India
| | - L Satyanarayana
- 4ICMR-National Institute of Cancer Prevention and Research, Sector-39, Noida, Uttar Pradesh 201301 India
| | - A Shrivastava
- 4ICMR-National Institute of Cancer Prevention and Research, Sector-39, Noida, Uttar Pradesh 201301 India
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16
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Perfetto L, Pastrello C, del-Toro N, Duesbury M, Iannuccelli M, Kotlyar M, Licata L, Meldal B, Panneerselvam K, Panni S, Rahimzadeh N, Ricard-Blum S, Salwinski L, Shrivastava A, Cesareni G, Pellegrini M, Orchard S, Jurisica I, Hermjakob H, Porras P. The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database (Oxford) 2020; 2020:baaa096. [PMID: 33206959 PMCID: PMC7673336 DOI: 10.1093/database/baaa096] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 10/19/2020] [Accepted: 10/23/2020] [Indexed: 12/14/2022]
Abstract
The current coronavirus disease of 2019 (COVID-19) pandemic, caused by the severe acute respiratory syndrome coronavirus (SARS-CoV)-2, has spurred a wave of research of nearly unprecedented scale. Among the different strategies that are being used to understand the disease and develop effective treatments, the study of physical molecular interactions can provide fine-grained resolution of the mechanisms behind the virus biology and the human organism response. We present a curated dataset of physical molecular interactions focused on proteins from SARS-CoV-2, SARS-CoV-1 and other members of the Coronaviridae family that has been manually extracted by International Molecular Exchange (IMEx) Consortium curators. Currently, the dataset comprises over 4400 binarized interactions extracted from 151 publications. The dataset can be accessed in the standard formats recommended by the Proteomics Standards Initiative (HUPO-PSI) at the IntAct database website (https://www.ebi.ac.uk/intact) and will be continuously updated as research on COVID-19 progresses.
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Affiliation(s)
- L Perfetto
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - C Pastrello
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
| | - N del-Toro
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - M Duesbury
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
- UCLA-DOE Institute, UCLA, Los Angeles, CA 90095, USA
| | - M Iannuccelli
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, 00133, Italy
| | - M Kotlyar
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
| | - L Licata
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, 00133, Italy
| | - B Meldal
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - K Panneerselvam
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - S Panni
- Department of Biology, Ecology and Earth Sciences, Università della Calabria, Rende, 87036, Italy
| | - N Rahimzadeh
- UCLA-DOE Institute, UCLA, Los Angeles, CA 90095, USA
- Providence John Wayne Cancer Institute, Department of Translational Molecular, Santa Monica, CA 90404, USA
| | - S Ricard-Blum
- Univ Lyon, University Claude Bernard Lyon 1, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry (ICBMS), UMR 5246, F-69622 Villeurbanne, 69622, France
| | - L Salwinski
- UCLA-DOE Institute, UCLA, Los Angeles, CA 90095, USA
| | - A Shrivastava
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - G Cesareni
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, 00133, Italy
| | - M Pellegrini
- Department of Molecular, Cell and Developmental Biology, UCLA, Los Angeles, CA 90095, USA
| | - S Orchard
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - I Jurisica
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
- Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, ON, M5T 0S8, Canada
| | - H Hermjakob
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
| | - P Porras
- European Molecular Biology Laboratory, Wellcome Genome Campus, European Bioinformatics Institute (EMBL-EBI), Hinxton, CB10 1SD, UK
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17
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Shrivastava A, Shrestha L, Gurung S, Joshi B. Anxiolytic and antidepressant-like effect of the ethanolic extract of Cassia tora seed in Swiss mice. J Complement Med Res 2020. [DOI: 10.5455/jcmr.2020.11.01.01] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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18
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Jamre R, Ghori H, Singh O, Tiwari V, Shrivastava A. Comparison of two multifraction radiotherapy schedules in management of painful bone metastases: A single institution prospective study. Niger J Clin Pract 2019; 22:1539-1545. [PMID: 31719275 DOI: 10.4103/njcp.njcp_387_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Background Metastatic disease of bone is a common complication of most of the advanced malignancies. The majority of patients with bone metastases (BM) experience pain during their disease course and pain control can significantly improve their quality of life. Radiotherapy (RT) is an important modality in the management of BM and different schedules are followed worldwide. Aim The aim of this study was to compare two multi-fractionated RT regimens (30Gy in 10 fractions and 20Gy in 5 fractions) with respect to the patient's performance, response and pain score in palliative management of painful BM. Methods This prospective observational study was undertaken between October 2015 and September 2017 at a government medical college in central India. Two fractionation regimens (30 Gy/10 fractions and 20 Gy/5 fractions) were used to treat 50 patients with painful BM (n = 25 in each arm). Patients were treated on telecobalt machine and response assessment done in terms of complete/partial/intermediate response and pain progression. Assessment was performed at one, two and three months post treatment. Statistical analysis was done using Fisher's exact test, student t-test and Chi-square test. A value of P < 0.05 was considered significant. Results There were 9 males (36%) and 16 females (64%) in arm A, and 15 males (60%) and 10 females (40%) in arm B. The median age was 47.50 years (range 28-81 years) in arm A and 54 years (range 34-85 years) in arm B. There was no statistically significant difference between the two groups in terms of pain palliation at a 1 month (p = 0.73), 2 month (p = 0.75) or 3 month (p = 0.71) follow up. In addition, the mean performance scores at the end of 3rd month in the 2 arms did not show any statistically significant difference (p = 0.51). Conclusion A shorter treatment schedule (5 fractions) was equally efficacious as the standard schedule (10 fractions) in our setting. With the advantage of shorter overall treatment time and avoidance of re-irradiation, this schedule may be favourable for high volume centres.
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Affiliation(s)
- R Jamre
- Department of Radiation Oncology, Gandhi Medical College, Bhopal, Madhya Pradesh, India
| | - H Ghori
- Department of Radiation Oncology, Gandhi Medical College, Bhopal, Madhya Pradesh, India
| | - O Singh
- Department of Radiation Oncology, Gandhi Medical College, Bhopal, Madhya Pradesh, India
| | - V Tiwari
- Department of Radiation Oncology, Gandhi Medical College, Bhopal, Madhya Pradesh, India
| | - A Shrivastava
- Department of Radiation Oncology, Gandhi Medical College, Bhopal, Madhya Pradesh, India
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19
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Abstract
Common carotid artery (CCA) usually does not have any branches in the neck and divides into internal and external carotid artery. Superior thyroid and lingual artery (commonly called as thyro lingual trunk) are the branches of external carotid artery. We report a case of rare origin of thyrolingual trunk from the CCA in a case of ruptured intracranial aneurysm.
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Affiliation(s)
- Sumit Goyal
- Department of Neurosciences, Pushpawati Singhania Research Institute Hospital, New Delhi, India
| | - Manish S Jain
- Department of Neurosciences, Pushpawati Singhania Research Institute Hospital, New Delhi, India
| | - Amit Shrivastava
- Department of Neurosciences, Pushpawati Singhania Research Institute Hospital, New Delhi, India
| | - Rahul Jain
- Department of Neurosciences, Pushpawati Singhania Research Institute Hospital, New Delhi, India
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20
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Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, Orchard S, Porras P. Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nat Commun 2019; 10:1098. [PMID: 30833551 PMCID: PMC6399256 DOI: 10.1038/s41467-019-08814-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Affiliation(s)
| | - N Del-Toro
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - M Duesbury
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - M Koch
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.,Novartis Institutes for BioMedical Research (NIBR), Maulbeerstrasse 66, 4058, Basel, Canton of Basel-Stadt, Switzerland
| | - L Perfetto
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - A Shrivastava
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - D Ochoa
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - O Wagih
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.,Deep Genomics, MaRS Centre, 661 University Ave, Suite 480, Toronto, ON, M5G 1M1, Canada
| | - J Piñero
- Research Programme on Biomedical Informatics (GRIB), Department of Experimental and Health Sciences (DCEXS), Hospital del Mar Medical Research Institute (IMIM), Universitat Pompeu Fabra (UPF), 08003, Barcelona, Spain
| | - M Kotlyar
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
| | - C Pastrello
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada
| | - P Beltrao
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - L I Furlong
- Research Programme on Biomedical Informatics (GRIB), Department of Experimental and Health Sciences (DCEXS), Hospital del Mar Medical Research Institute (IMIM), Universitat Pompeu Fabra (UPF), 08003, Barcelona, Spain
| | - I Jurisica
- Krembil Research Institute, Data Science Discovery Centre for Chronic Diseases, University Health Network, 5KD-407, 60 Leonard Avenue, Toronto, ON, M5T 0S8, Canada.,Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, M4B 1B5, Canada
| | - H Hermjakob
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.,State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Life Omics, 102206, Beijing, China
| | - S Orchard
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - P Porras
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
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21
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Rao PS, Mhaisalkar VA, Shrivastava A, Kumar A, Chakrabarti T, Devotta S. Retraction Note to: Environmental impact of plantations in and around the petroleum refinery: a case study. Environ Monit Assess 2018; 191:9. [PMID: 30535805 DOI: 10.1007/s10661-018-7144-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
This article [1] has been retracted at the request of the Editor-in-Chief. Significant sections of the article show a similarity with the author's own article published previously [2]. All the authors agree with the retraction.
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Affiliation(s)
- Padma S Rao
- Kolkata Zonal Laboratory, NEERI KoZL, Kolkata, 700107, India.
| | | | - A Shrivastava
- Kolkata Zonal Laboratory, NEERI KoZL, Kolkata, 700107, India
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22
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Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, Lovering RC, Lynn DJ, Meldal BHM, Micklem G, Panni S, Porras P, Ricard-Blum S, Roechert B, Salwinski L, Shrivastava A, Sullivan J, Thierry-Mieg N, Yehudi Y, Van Roey K, Orchard S. Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinformatics 2018; 19:134. [PMID: 29642841 PMCID: PMC5896046 DOI: 10.1186/s12859-018-2118-1] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2017] [Accepted: 03/20/2018] [Indexed: 01/02/2023] Open
Abstract
BACKGROUND Systems biologists study interaction data to understand the behaviour of whole cell systems, and their environment, at a molecular level. In order to effectively achieve this goal, it is critical that researchers have high quality interaction datasets available to them, in a standard data format, and also a suite of tools with which to analyse such data and form experimentally testable hypotheses from them. The PSI-MI XML standard interchange format was initially published in 2004, and expanded in 2007 to enable the download and interchange of molecular interaction data. PSI-XML2.5 was designed to describe experimental data and to date has fulfilled this basic requirement. However, new use cases have arisen that the format cannot properly accommodate. These include data abstracted from more than one publication such as allosteric/cooperative interactions and protein complexes, dynamic interactions and the need to link kinetic and affinity data to specific mutational changes. RESULTS The Molecular Interaction workgroup of the HUPO-PSI has extended the existing, well-used XML interchange format for molecular interaction data to meet new use cases and enable the capture of new data types, following extensive community consultation. PSI-MI XML3.0 expands the capabilities of the format beyond simple experimental data, with a concomitant update of the tool suite which serves this format. The format has been implemented by key data producers such as the International Molecular Exchange (IMEx) Consortium of protein interaction databases and the Complex Portal. CONCLUSIONS PSI-MI XML3.0 has been developed by the data producers, data users, tool developers and database providers who constitute the PSI-MI workgroup. This group now actively supports PSI-MI XML2.5 as the main interchange format for experimental data, PSI-MI XML3.0 which additionally handles more complex data types, and the simpler, tab-delimited MITAB2.5, 2.6 and 2.7 for rapid parsing and download.
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Affiliation(s)
- M Sivade Dumousseau
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - D Alonso-López
- Cancer Research Center (CiC-IBMCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Científicas (CSIC) and Universidad de Salamanca (USAL), 37007, Salamanca, Spain
| | - M Ammari
- School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, USA
| | | | - N H Campbell
- Institute of Cardiovascular Science, University College London, Rayne Building, 5 University Street, London, WC1E 6JF, UK
| | - A Ceol
- Center for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia (IIT), Via Adamello 16, I-20139, Milan, Italy
| | - G Cesareni
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy
| | - C Combe
- Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3BF, UK
| | - J De Las Rivas
- Cancer Research Center (CiC-IBMCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Científicas (CSIC) and Universidad de Salamanca (USAL), 37007, Salamanca, Spain
| | - N Del-Toro
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - J Heimbach
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK
- Department of Genetics, University of Cambridge, Cambridge, UK
| | - H Hermjakob
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
- State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China
| | - I Jurisica
- Krembil Research Institute, University Health Network, Toronto, ON, M5T 2S8, Canada
- Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, ON, Canada
| | - M Koch
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - L Licata
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy
| | - R C Lovering
- Institute of Cardiovascular Science, University College London, Rayne Building, 5 University Street, London, WC1E 6JF, UK
| | - D J Lynn
- EMBL Australia Group, South Australian Health and Medical Research Institute, Adelaide, Australia
- School of Medicine, Flinders University, Bedford Park, Adelaide, Australia
| | - B H M Meldal
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - G Micklem
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK
- Department of Genetics, University of Cambridge, Cambridge, UK
| | - S Panni
- Department of Biology, Ecology and Earth Sciences, Università della Calabria, Rende, Italy
| | - P Porras
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - S Ricard-Blum
- Univ Lyon, University Claude Bernard Lyon 1, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry (ICBMS), UMR 5246, F-69622, Villeurbanne, France
| | - B Roechert
- SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211, Geneva 4, Switzerland
| | - L Salwinski
- UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, USA
| | - A Shrivastava
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - J Sullivan
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK
- Department of Genetics, University of Cambridge, Cambridge, UK
| | - N Thierry-Mieg
- TIMC-IMAG, CNRS, Univ. Grenoble Alpes, F-38000, Grenoble, France
| | - Y Yehudi
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK
- Department of Genetics, University of Cambridge, Cambridge, UK
| | - K Van Roey
- Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117, Heidelberg, Germany
| | - S Orchard
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
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Sivade Dumousseau M, Koch M, Shrivastava A, Alonso-López D, De Las Rivas J, Del-Toro N, Combe CW, Meldal BHM, Heimbach J, Rappsilber J, Sullivan J, Yehudi Y, Orchard S. JAMI: a Java library for molecular interactions and data interoperability. BMC Bioinformatics 2018; 19:133. [PMID: 29642846 PMCID: PMC5896107 DOI: 10.1186/s12859-018-2119-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2017] [Accepted: 03/20/2018] [Indexed: 11/22/2022] Open
Abstract
Background A number of different molecular interactions data download formats now exist, designed to allow access to these valuable data by diverse user groups. These formats include the PSI-XML and MITAB standard interchange formats developed by Molecular Interaction workgroup of the HUPO-PSI in addition to other, use-specific downloads produced by other resources. The onus is currently on the user to ensure that a piece of software is capable of read/writing all necessary versions of each format. This problem may increase, as data providers strive to meet ever more sophisticated user demands and data types. Results A collaboration between EMBL-EBI and the University of Cambridge has produced JAMI, a single library to unify standard molecular interaction data formats such as PSI-MI XML and PSI-MITAB. The JAMI free, open-source library enables the development of molecular interaction computational tools and pipelines without the need to produce different versions of software to read different versions of the data formats. Conclusion Software and tools developed on top of the JAMI framework are able to integrate and support both PSI-MI XML and PSI-MITAB. The use of JAMI avoids the requirement to chain conversions between formats in order to reach a desired output format and prevents code and unit test duplication as the code becomes more modular. JAMI’s model interfaces are abstracted from the underlying format, hiding the complexity and requirements of each data format from developers using JAMI as a library.
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Affiliation(s)
- M Sivade Dumousseau
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - M Koch
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - A Shrivastava
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - D Alonso-López
- Cancer Research Center (CiC-IBMCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Científicas (CSIC) and Universidad de Salamanca (USAL), 37007, Salamanca, Spain
| | - J De Las Rivas
- Cancer Research Center (CiC-IBMCC, CSIC/USAL/IBSAL), Consejo Superior de Investigaciones Científicas (CSIC) and Universidad de Salamanca (USAL), 37007, Salamanca, Spain
| | - N Del-Toro
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - C W Combe
- Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3BF, UK
| | - B H M Meldal
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK
| | - J Heimbach
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK.,Department of Genetics, University of Cambridge, Cambridge, UK
| | - J Rappsilber
- Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3BF, UK.,Bioanalytics, Institute for Biotechnology, Technische Universität Berlin, 13355, Berlin, Germany
| | - J Sullivan
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK.,Department of Genetics, University of Cambridge, Cambridge, UK
| | - Y Yehudi
- Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK.,Department of Genetics, University of Cambridge, Cambridge, UK
| | - S Orchard
- European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
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Gadve VR, Shenoi R, Vats V, Shrivastava A. Evaluation of Anxiety, Pain, and Hemodynamic Changes during Surgical Removal of Lower Third Molar under Local Anesthesia. Ann Maxillofac Surg 2018; 8:247-253. [PMID: 30693240 PMCID: PMC6327800 DOI: 10.4103/ams.ams_216_18] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Aim: The aim of this study are to determine the hemodynamic changes in healthy patients during the surgical removal of lower third molar and to evaluate whether these variations are attributable to patient anxiety and pain experienced during surgical procedure. Materials and Methods: Sixty healthy patients were evaluated (i) to determine the hemodynamic changes (systolic blood pressure [SBP], diastolic blood pressure [DBP], heart rate [HR], and oxygen saturation) at nine occasions: before starting the surgical procedure, 1 min and 4 min after local anesthetic injection, during the incision, at the time of ostectomy, at the completion of tooth removal, at the start and completion of suturing, and finally, after completion of surgery and (ii) to evaluate whether these variations are attributable to patient anxiety and pain experienced during the surgical procedure. Hemodynamic variables were compared between the gender and at different time points by performing two-way analysis of variance for repeated measures. Global mean values of hemodynamic variables were compared between male and female using unpaired t-test. Categorical variables were compared by Chi-square test. All the tests were two-sided. P < 0.05 was considered statistically significant. Results: SBP and DBP showed significant changes; the highest value was recorded at the time of ostectomy/tooth sectioning. Maximum HR was observed 4 min after local anesthetic injection and the lowest HR was recorded after completion of tooth extraction, i.e., during the suturing. In females, mean HR was significantly increased. Conclusion: The present study suggests that dental anxiety impacts the effect of delivery of local anesthesia on blood pressure and is significantly associated with increased HR.
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Affiliation(s)
- Vandana R Gadve
- Department of Oral and Maxillofacial Surgery, Government Dental College and Hospital, Nagpur, Maharashtra, India
| | - Ramakrishna Shenoi
- Department of Oral and Maxillofacial Surgery, VSPM's Dental College and Research Centre, Digdoh Hills, Nagpur, Maharashtra, India
| | - Vikas Vats
- Consultant Oral & Maxillofacial Surgeon, Bhiwani, Haryana, India
| | - Amit Shrivastava
- Consultant Oral & Maxillofacial Surgeon, Jabalpur, Madhya Pradesh, India
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Shrivastava A, Makwana M, Chaudhuri P, Rajendrakumar E. Preparation and Characterization of the Lithium Metatitanate Ceramics by Solution-Combustion Method for Indian LLCB TBM. Fusion Science and Technology 2017. [DOI: 10.13182/fst13-658] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- A. Shrivastava
- Institute for Plasma Research, Gandhinagar, Gujarat, India
| | - M. Makwana
- Institute for Plasma Research, Gandhinagar, Gujarat, India
| | - P. Chaudhuri
- Institute for Plasma Research, Gandhinagar, Gujarat, India
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Abstract
Portal vein aneurysm (PVA) is a rare vascular dilatation of the portal vein. It is a rare vascular anomaly representing less than 3% of all visceral aneurysms and is not well understood. Usually, PVA are incidental findings, are asymptomatic, and clinical symptoms are proportionally related to size. Patients present with nonspecific epigastric pain or gastrointestinal bleeding with underlying portal hypertension. PVA may be associated with various complications such as biliary tract compression, portal vein thrombosis/rupture, duodenal compression, gastrointestinal bleeding, and inferior vena cava obstruction. Differential diagnoses of portal vein aneurysms are solid, cystic, and hypervascular abdominal masses, and it is important that the radiologists be aware of their multi-modality appearance; hence, the aim of this article was to provide an overview of the available literature to better simplify various aspects of this rare entity and diagnostic appearance on different modality with available treatment options. In our case, a 55-year-old male patient came to the gastroenterology OPD for further management of pancreatitis with portal hypertension and biliary obstruction with plastic stents in CBD and PD for the same. In this article, we have reported a case of largest intrahepatic portal vein aneurysm and its management by endovascular technique. As per our knowledge, this is the largest intrahepatic portal vein aneurysm and first case where the endovascular technique was used for the treatment of the same.
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Affiliation(s)
- Amit Shrivastava
- McGill University, Montreal, Canada
- Address for correspondence: Amit Shrivastava, Post Doctoral Fellow, Abdominal Imaging and Non-vascular Intervention, McGill University, Montreal, Canada. Fax: +1 514 934 8263.Post Doctoral Fellow, Abdominal Imaging and Non-vascular Intervention, McGill UniversityMontrealCanada
| | - Jagdeesh S. Rampal
- Chief, Department of Intervention Radiology, Asian Institute of Gastroenterology, Hyderabad, India
| | - D. Nageshwar Reddy
- Director, Department of Medical Gastroenterology, Asian Institute of Gastroenterology, Hyderabad, India
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Heffernan B, Shrivastava A, Toniolo D, Semmens M, Syron E. Operation of a Large Scale Membrane Aerated Biofilm Reactor for the treatment of Municipal Wastewater. ACTA ACUST UNITED AC 2017. [DOI: 10.2175/193864717822155795] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- B Heffernan
- OxyMem, Blyry, Athlone, Co. Westmeath, Ireland
| | | | - D Toniolo
- Dow Water & Process Solutions, Diamond Tower, São Paulo, Brasil
| | - M Semmens
- OxyMem, Blyry, Athlone, Co. Westmeath, Ireland
| | - E Syron
- OxyMem, Blyry, Athlone, Co. Westmeath, Ireland
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Mukherjee A, Biswas P, Shaikh MM, Roy S, Goswami A, Pradhan M, Basu P, Santra S, Pandit S, Mahata K, Shrivastava A. Study of Quasielastic scattering for 7Li+ 159Tb at around- barrier energies. EPJ Web Conf 2017. [DOI: 10.1051/epjconf/201716300039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Shrivastava A, Srivastava T, Saxena R. CT Angiographic Evaluation of Pattern and Distribution of Stenosis and its Association with Risk Factors Among Indian Ischemic Stroke Patients. Pol J Radiol 2016; 81:357-362. [PMID: 27994695 PMCID: PMC5142582 DOI: 10.12659/pjr.897039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Accepted: 12/30/2015] [Indexed: 11/09/2022] Open
Abstract
BACKGROUND Stroke is the major cause of disability and third major cause of death. Ischemia causes about 80% of stroke cases; stenosis and occlusion are the predominant cause of stroke. Our purpose for this study was to evaluate the pattern and distribution of stenosis and its association with risk factors in Indian ischemic stroke patients and in other countries, for comparison. MATERIAL/METHODS We evaluated 60 patients after ischemic stroke with CT angiography. The degree of stenosis was measured by the North American Symptomatic Carotid Endarterectomy Trial (NASCET). The results were analyzed by descriptive statistics and chi-square test. RESULTS Out of 60 cases, 32 cases were positive for significant stenosis and a total number of stenotic segments was 45. Out of 45 stenotic segments, 29 were single stenotic segments (16 intracranial and 13 extracranial) and 16 were multiple stenotic segments (8 intracranial and 8 extracranial). In the total number of stenotic segments (single and multiple), there were 24 (53.33%) intracranial and 21 (46.67%) extracranial. The most commonly involved intracranial stenosis segment was MCA, present in 10 (41.6%) out of 24 intracranial segments. Most commonly involved extracranial stenosis segment was ICA, present in 14 (66.6%) out of 21 extracranial segments. Diabetes is found to be the most common risk factor of intracranial stenosis while hypertension and hypercholesterolemia are the major risk factors of extracranial stenosis. CONCLUSIONS In the Indian population, intracranial stenosis is more common than extracranial one, anterior circulation stenosis is more common than posterior circulation stenosis; single stenosis is more common than multiple stenosis.
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Affiliation(s)
- Amit Shrivastava
- Department of Radiology, Mahatma Gandhi Medical College, Jaipur, India
| | - Trilochan Srivastava
- Department of Neurology, Sawai ManSingh Medical College and Hospital, Jaipur, India
| | - Richa Saxena
- Department of Public Health Dentistry, Mahatma Gandhi Medical College, Jaipur, India
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Shrivastava A, Rampal JS, Reddy DN, Rao GV. Direct Needle Puncture and Embolization of Splenic Artery Pseudoaneurysm in Case of Chronic Atrophic Calcific Pancreatitis. Pol J Radiol 2016; 81:462-464. [PMID: 27757174 PMCID: PMC5040223 DOI: 10.12659/pjr.898000] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Accepted: 03/13/2016] [Indexed: 12/14/2022] Open
Abstract
Background Gastro-Intestinal bleeding remains a frequent clinical dilemma and common cause of hospitalization, morbidity and mortality. Case Report We report a case of pseudo aneurysm of splenic artery developed after an episode of acute on chronic pancreatitis which was treated by direct percutaneous puncture of pseudoaneurysm and embolization by coils. Conclusions The aim was to preserve the main splenic artery and avoid the complications of splenic artery embolization like infarcts and abscess.
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Affiliation(s)
- Amit Shrivastava
- Department of Radiology, Mahatma Gandhi Medical College, Jaipur, India
| | - Jagadeesh Singh Rampal
- Department of Intervention Radiology, Asian institute of Gastroenterology, Hyderabad, India
| | - D Nageshwar Reddy
- Department of Medical Gastroenterology, Asian institute of Gastroenterology, Hyderabad, India
| | - Guduru Venkat Rao
- Department of Medical Gastroenterology, Asian institute of Gastroenterology, Hyderabad, India
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Somerville R, Viljoen K, McKey S, Shrivastava A, Mehegan J, Segurado R, Murrin C, Kelleher C. Plasma fibrinogen is an important clinical marker for prospective all-cause mortality in the lifeways Cross-Generation Cohort Study. Atherosclerosis 2016. [DOI: 10.1016/j.atherosclerosis.2016.07.309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Pandey A, Shrivastava A, Solanki A. Study of atherogenic lipid profile, high sensitive C-reactive protein neurological deficit and short-term outcome in stroke subtypes. Iran J Neurol 2016; 15:146-52. [PMID: 27648176 PMCID: PMC5027150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
BACKGROUND Stroke is one of the most frequent causes of death and disability worldwide and has significant clinical and socioeconomic impact. Hyperlipidemia and inflammation play major roles in atherothrombosis and in stroke. This study is conducted to compare the high sensitive C-reactive protein (hs-CRP) levels and the lipid profile parameters between stroke patients and control group and demonstrate correlation between markers, neurological deficit, and short-term outcome. METHODS We have studied a total 162 patients according to inclusion criteria. Serum level of hs-CRP and lipid profile estimated and correlated with neurological deficit and short-term outcome. RESULTS We found stroke patients had significantly higher levels of hs-CRP, total cholesterol (TC), triglyceride (TG), low-density lipoprotein (LDL), and low level of high-density lipoprotein (HDL) than control. When we compared ischemic and hemorrhagic stroke (HS), data show increased level of triglyceride, LDL and HDL, and decreased the level of hs-CRP in ischemic stroke group than HS group. However, the National Institutes of Health Stroke Scale (NIHSS) score significantly higher in HS as compared to ischemic stroke at the time of admission and on the 7(th) day. CONCLUSION Thus, continuous clinical observation is necessary for clear differentiation of those changes. Furthermore, the determination of some reliable soluble markers of neuronal damage in blood and cerebrospinal fluid in the early infarction period would be much easier and more useful for tracking the course and prognosis of the disease and for any appropriate therapeutic approach.
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Affiliation(s)
- Aparna Pandey
- Department of Biochemistry, Narsinhbhai Patel Dental College and Hospital, Visnagar, India
| | - Amit Shrivastava
- Department of Biochemistry, Medanta-The Medicity, Gurgaon, India
| | - Ashok Solanki
- Department of Physiology, AMC MET Medical College, L.G. Hospital, Maninagar, Ahmedabad, India
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Richa, R Y, Puranik MP, Shrivastava A. Association between osteoporosis and periodontal disease among postmenopausal Indian women. ACTA ACUST UNITED AC 2016; 8. [PMID: 27339765 DOI: 10.1111/jicd.12223] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 04/12/2016] [Indexed: 11/27/2022]
Abstract
AIM The aim of the present study was to determine the association between osteoporosis and periodontal disease among postmenopausal Indian women. METHODS A cross-sectional comparative study was conducted among postmenopausal women aged 45-65 years attending various hospitals in Bangalore, India. The examination was performed using the plaque index, gingival index, modified sulcus bleeding index, and community periodontal index. The women then underwent a bone mineral density (BMD) test using an ultrasonometer. Based on the BMD scores, participants were divided into osteoporotic and non-osteoporotic groups. For the statistical analysis, χ2 -test, Student's t-test, and multiple regression analysis were applied. RESULTS The mean plaque, gingival, and bleeding scores were significantly higher among osteoporotic women (1.83 ± 0.47, 1.73 ± 0.49, 1.82 ± 0.52) compared to the non-osteoporotic women (1.31 ± 0.40, 1.09 ± 0.52, 1.25 ± 0.50). The mean number of sextants affected for codes 3 and 4 of the community periodontal index and codes 1, 2, and 3 of loss of attachment were significantly higher among osteoporotic group compared to the non-osteoporotic group. Multiple logistic regression tests confirmed the statistically-significant association between osteoporosis and menopause duration, loss of attachment, bleeding, and gingivitis scores. CONCLUSIONS Skeletal BMD is related to clinical attachment loss, bleeding, and gingivitis, which suggests that there is an association between osteoporosis and periodontal diseases.
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Affiliation(s)
- Richa
- Government Dental College and Research Institute, Bangalore, Karnataka, India
| | - Yashoda R
- Government Dental College and Research Institute, Bangalore, Karnataka, India
| | - Manjunath P Puranik
- Government Dental College and Research Institute, Bangalore, Karnataka, India
| | - Amit Shrivastava
- Government Dental College and Research Institute, Bangalore, Karnataka, India
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Kumar T, Shrivastava A, Kumar A, Khasnobis P, Narain J, Laserson K, Venkatesh S. Hepatitis A outbreak associated with unsafe drinking water in a medical college student's hostel, New Delhi, India, 2014. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.939] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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SreeKalpana M, Asha F, Kapil G, Murhekar M, Maruthi P, Prakash Kumar K, Doddamallappa R, Ravikumar M, Shwetha H, Manuja L, Ramrao B, Mohan Kumar R, Venkatesh S, Shrivastava A. Hepatitis E outbreak among factory workers due to contaminated factory water, Mandya District, Karnataka, India, 2015. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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Padda P, Shrivastava A, Sodha S, Venkatesh S, KR V. Outbreak investigation of Kaysanur Forest Disease (KFD) in Wayanad district, Kerala, India 2015. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Nayak P, Papanna M, Shrivastava A, Khasnobis P, Lokhande G, Kumar A, Venkatesh S, Patnaik B, Pradhan M. Unexplained neurological illness in children, Malkangiri district, Odisha, India 2014. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.668] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Moin Shaikh M, Roy S, Rajbanshi S, Mukherjee A, Pradhan MK, Basu P, Pal S, Nanal V, Shrivastava A, Saha S, Pillay RG. Measurement of fusion excitation function for 7Li+ 64Ni near the barrier. EPJ Web of Conferences 2016. [DOI: 10.1051/epjconf/201611708020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Kumar T, Kumar A, Laserson K, Narain J, Venkatesh S, Chauhan L, Averhoff F, Shrivastava A. Viral hepatitis in India: Analysis of national disease surveillance program data, 2011−13. J Clin Virol 2015. [DOI: 10.1016/j.jcv.2015.06.074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Rana TK, Bhattacharya C, Manna S, Srivastava V, Banerjee K, Kundu S, Roy P, Pandey R, Chaudhuri A, Roy T, Ghosh TK, Mukherjee G, Bhattacharya S, Meena JK, Pandit SK, Mahata K, Patale P, Shrivastava A, Nanal V. Fragment emission studies in low energy light heavy-ion reactions. EPJ Web of Conferences 2015. [DOI: 10.1051/epjconf/20158600036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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41
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Shrivastava A, Navin A, Diaz-Torres A, Nanal V, Ramachandran K, Rejmund M, Bhattacharyya S, Chatterjee A, Kailas S, Lemasson A, Palit R, Parkar V, Pillay R, Rout P, Sawant Y. Dynamics of fragment capture for cluster structures of weakly bound7Li. EPJ Web of Conferences 2013. [DOI: 10.1051/epjconf/20136302018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Shrivastava PK, Shrivastava A, Sinha SK, Shrivastava SK. Dextran Carrier Macromolecules for Colon-specific Delivery of 5-Aminosalicylic Acid. Indian J Pharm Sci 2013; 75:277-83. [PMID: 24082343 PMCID: PMC3783745 DOI: 10.4103/0250-474x.117420] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2012] [Revised: 03/03/2013] [Accepted: 03/13/2013] [Indexed: 11/30/2022] Open
Abstract
Present manuscript describes the sustained and targeted delivery of 5-aminosalicylic acid to the distal ileum and proximal colon, using dextran (40 kDa) as a carrier for targeting 5-aminosalicylic acid at the colonic site by attaching p-aminobenzoic acid and benzoic acid as linkers. Prepared conjugate were characterized by UV, HPLC, FT-IR, and 1H NMR. The degree of substitution was estimated by complete hydrolysis of conjugates in borate buffer and in vitro hydrolysis study of conjugates was performed in different biological media. It was observed that 5-aminosalicylic acid alone have produced high incidence of gastric ulcer with high ulcer index whereas lower ulcer index was found for the dextran conjugates of 5-aminosalicylic acid. The release pattern of conjugates in 3% w/v rat caecal content was confirmed the colon specificity of 5-aminosalicylic acid conjugates.
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Affiliation(s)
- P K Shrivastava
- Pharmaceutical Chemistry Research Laboratory, Department of Pharmaceutics, Indian Institute of Technology, Banaras Hindu University, Varanasi-221 005, India
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Datar VM, Chakrabarty DR, Kumar S, Nanal V, Pastore S, Wiringa RB, Behera SP, Chatterjee A, Jenkins D, Lister CJ, Mirgule ET, Mitra A, Pillay RG, Ramachandran K, Roberts OJ, Rout PC, Shrivastava A, Sugathan P. Electromagnetic transition from the 4+ to 2+ resonance in 8Be measured via the radiative capture in 4He + 4He. Phys Rev Lett 2013; 111:062502. [PMID: 23971569 DOI: 10.1103/physrevlett.111.062502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Indexed: 06/02/2023]
Abstract
An earlier measurement on the 4+ to 2+ radiative transition in 8Be provided the first electromagnetic signature of its dumbbell-like shape. However, the large uncertainty in the measured cross section does not allow a stringent test of nuclear structure models. This Letter reports a more elaborate and precise measurement for this transition, via the radiative capture in the 4He + 4He reaction, improving the accuracy by about a factor of 3. Ab initio calculations of the radiative transition strength with improved three-nucleon forces are also presented. The experimental results are compared with the predictions of the alpha cluster model and ab initio calculations.
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Affiliation(s)
- V M Datar
- Nuclear Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
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Flavigny F, Gillibert A, Nalpas L, Obertelli A, Keeley N, Barbieri C, Beaumel D, Boissinot S, Burgunder G, Cipollone A, Corsi A, Gibelin J, Giron S, Guillot J, Hammache F, Lapoux V, Matta A, Pollacco EC, Raabe R, Rejmund M, de Séreville N, Shrivastava A, Signoracci A, Utsuno Y. Limited asymmetry dependence of correlations from single nucleon transfer. Phys Rev Lett 2013; 110:122503. [PMID: 25166799 DOI: 10.1103/physrevlett.110.122503] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Revised: 01/09/2013] [Indexed: 06/03/2023]
Abstract
Single nucleon pickup reactions were performed with a 18.1 MeV/nucleon (14)O beam on a deuterium target. Within the coupled reaction channel framework, the measured cross sections were compared to theoretical predictions and analyzed using both phenomenological and microscopic overlap functions. The missing strength due to correlations does not show significant dependence on the nucleon separation energy asymmetry over a wide range of 37 MeV, in contrast with nucleon removal data analyzed within the sudden-eikonal formalism.
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Affiliation(s)
- F Flavigny
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France and Instituut voor Kern- en Stralingsfysica, KU Leuven, B-3001 Leuven, Belgium
| | - A Gillibert
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - L Nalpas
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - A Obertelli
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - N Keeley
- National Centre for Nuclear Research, ul Andrezja Sołtana 7, PL-05400 Otwock, Poland
| | - C Barbieri
- Department of Physics, University of Surrey, Guilford GU2 7XH, United Kingdom
| | - D Beaumel
- Institut de Physique Nucléaire Orsay, IN2P3-CNRS, 91406 Orsay Cedex, France
| | - S Boissinot
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | | | - A Cipollone
- Department of Physics, University of Surrey, Guilford GU2 7XH, United Kingdom and Dipartimento di Fisica, Università Sapienza, I-00185 Roma, Italy and INFN, Sezione di Roma, Piazzale Aldo Moro 2, I-00185 Roma, Italy
| | - A Corsi
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - J Gibelin
- LPC Caen, ENSICAEN, Université de Caen, CNRS/IN2P3, Caen, France
| | - S Giron
- Institut de Physique Nucléaire Orsay, IN2P3-CNRS, 91406 Orsay Cedex, France
| | - J Guillot
- Institut de Physique Nucléaire Orsay, IN2P3-CNRS, 91406 Orsay Cedex, France
| | - F Hammache
- Institut de Physique Nucléaire Orsay, IN2P3-CNRS, 91406 Orsay Cedex, France
| | - V Lapoux
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - A Matta
- Institut de Physique Nucléaire Orsay, IN2P3-CNRS, 91406 Orsay Cedex, France
| | - E C Pollacco
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - R Raabe
- Instituut voor Kern- en Stralingsfysica, KU Leuven, B-3001 Leuven, Belgium and GANIL, BP 55076,14076 Caen Cedex 5, France
| | - M Rejmund
- GANIL, BP 55076,14076 Caen Cedex 5, France
| | - N de Séreville
- Institut de Physique Nucléaire Orsay, IN2P3-CNRS, 91406 Orsay Cedex, France
| | | | - A Signoracci
- CEA, Centre de Saclay, IRFU/Service de Physique Nucléaire, F-91191 Gif-sur-Yvette, France
| | - Y Utsuno
- Advanced Science Research Center, Japan Atomic Energy Agency, Tokai, Ibaraki 319-1195, Japan
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Thakur S, Singh V, Palshetkar C, Nanal V, Parkar V, Pillay R, Shrivastava A, Rout P, Ramachandran K, Chatterjee A. Study of fusion in6,7Li+197Au at near barrier energies. EPJ Web of Conferences 2011. [DOI: 10.1051/epjconf/20111716017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Palshetkar C, Santra S, Chatterjee A, Ramachandran K, Thakur S, Pandit S, Mahata K, Shrivastava A, Parkar V, Nanal V, Roy B, Jha V, Kalias S. Study of reactions with the weakly bound projectile 9Be with 89Y. EPJ Web of Conferences 2011. [DOI: 10.1051/epjconf/20111703006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Shrivastava A, Murrin C, Kelleher C. P2-279 10-year mortality follow-up of maternal and paternal grandparents shows different patterns of association with their grandchildren's birth weights: the Lifeways Cross Generation Cohort Study. Br J Soc Med 2011. [DOI: 10.1136/jech.2011.142976k.12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Shrivastava A, Murrin C, Kelleher C. O1-5.4 Familial aggregation in nutrient intake patterns: comparing intergenerational and prenatal-postnatal effects in Lifeways Cross Generation Cohort Study. Br J Soc Med 2011. [DOI: 10.1136/jech.2011.142976a.39] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Shrivastava A, Murrin C, Kelleher C. P2-474 Familial predictors of variability in pre-school children's health: the Lifeways Cross Generation Cohort Study. Br J Soc Med 2011. [DOI: 10.1136/jech.2011.142976m.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Shrivastava A, Sakthivel S, Pitchumani B, Rathore A. A statistical approach for estimation of significant variables in wet attrition milling. POWDER TECHNOL 2011. [DOI: 10.1016/j.powtec.2011.03.021] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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