Short interval overnight laser scanning suggest sub-circadian periodicity of tree turgor

A recent study by Zlinszky et al., 1 uses high-resolution terrestrial laser scanning to investigate the variability of overnight movement of leaves and branches in vascular plants. This study finds among others that the investigated plants show periodic movements of around one centimetre in amplitude and 2-6 hour periodicity. Sub-circadian process dynamics of plants were so far not in focus of research, but here we compare the findings with other published cases of short-term periodicity in leaf turgor, sap flow and especially trunk diameter. Several authors have noted overnight variations in these parameters within periods of several hours and in absence of environmental changes with similar dynamics. We revisit the unknown questions of short-term plant movement and make a suggestion for future research.

Short interval overnight laser scanning suggests sub-circadian periodicity of tree turgor

A recent study by Zlinszky et al., 1 uses high-resolution terrestrial laser scanning to investigate the variability of overnight movement of leaves and branches in vascular plants. This study finds among others that the investigated plants show periodic movements of around one centimetre in amplitude and 2-6 hour periodicity. Sub-circadian process dynamics of plants were so far not in focus of research, but here we compare the findings with other published cases of short-term periodicity in leaf turgor, sap flow and especially trunk diameter. Several authors have noted overnight variations in these parameters within periods of several hours and in absence of environmental changes with similar dynamics. We revisit the unknown questions of short-term plant movement and make a suggestion for future research.

In vitro selection of RNA aptamers directed against protein E: a Haemophilus influenzae adhesin

Protein E (PE) of Haemophilus influenzae is a highly conserved ubiquitous surface protein involved in adhesion to and activation of epithelial cells. The host proteins-vitronectin, laminin, and plasminogen are major targets for PE-dependent interactions with the host. To identify novel inhibitory molecules of PE, we used an in vitro selection method based on systematic evolution of ligands by exponential enrichment known as SELEX in order to select 2'F-modified RNA aptamers that specifically bind to PE. Fourteen selection cycles were performed with decreasing concentrations of PE. Sequencing of clones from the 14th selection round revealed the presence of semiconserved sequence motifs in loop regions of the RNA aptamers. Among these, three aptamers showed the highest affinity to PE in electrophoretic mobility shift assays and in dot blots. These three aptamers also inhibited the interaction of PE with vitronectin as revealed by ELISA. Moreover, pre-treatment of H. influenzae with the aptamers significantly inhibited binding of vitronectin to the bacterial surface. Biacore experiments indicated that one of the aptamers had a higher binding affinity for PE as compared to the other aptamers. Our results show that it is possible to select RNA inhibitors against bacterial adhesins using SELEX in order to inhibit interactions with target proteins.

In vitro selection of RNA aptamers against a conserved region of the Plasmodium falciparum erythrocyte membrane protein 1

The var-gene encoding Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) is known to play a major role in the pathogenicity of the P. falciparum parasite. The protein enables the parasite to adhere to the endothelial linings of small blood vessels (cytoadherence) as well as to non-infected erythrocytes (rosetting), thus preventing clearance from the bloodstream. The development and spread of resistance towards most anti-malarial drugs used for treatment and prevention of the most severe form of malaria truly emphasise the importance of a continuous research and development of new drugs. In this study we use Systematic Evolution of Ligands by EXponential enrichment (SELEX) methodology to isolate high-affinity ligands (aptamers). To validate the results from the SELEX in vitro selection, different aptamers have been selected against PfEMP1 in a live cell assay of P. falciparum strain FCR3S1.2, a highly rosetting strain. We have been able to show the rosette disrupting capacity of these SELEX-aptamers at concentrations of 33 nM and with 100% disruption at 387 nM. The described results show that RNA aptamers are promising candidates for adjunct therapy in severe malaria.