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Barwick SA, Brown DJ, Cullis BR, Bell AK, May TJ, Lollback MW, Rogan IM, Killeen ID, Caffery G, Piper LR, Bindon BM, Wilkins JF, Fowler DG. The performance of the Border Leicester in Australia. Anim Prod Sci 2021. [DOI: 10.1071/an19493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Aims
We examine the average performance of Border Leicester (BL) flocks that are part of LAMBPLAN, Australia’s sheep performance recording and genetic evaluation system. We also summarise outcomes from the New South Wales Department of Primary Industry’s research on BL improvement, and discuss the performance required for the BL to continue to be a pivotal part of the Australian prime lamb industry.
Key results
Modest gains have been recorded in the BL in growth since 2000 and faecal egg counts have reduced, suggesting improved worm resistance. The net reproductive rate has slightly improved, while inbreeding continues to increase. In work conducted by the New South Wales Department of Primary Industries, an improved BL flock, encompassing selection for multiple births and a broadening of the breed’s genetic base, had advantages over purebred BLs in many aspects of performance, including a 19.3% advantage in the net reproductive rate. Advantages in fertility were ~5%, litter size ~7% and lamb rearing ability ~5%. BL improved × Merino and (BL improved × BL) × Merino crossbred ewes also had advantages over traditional BL × Merino ewes in their joining performance when joined to Dorset rams.
Conclusions
Selection in the BL needs to emphasise traits in a manner consistent with their importance to commercial lamb production.
Implications
Embracing this selection and broadening the BL’s genetic base will assist the BL to maintain its place in the Australian lamb industry.
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Tate RD, Cullis BR, Smith SDA, Kelaher BP, Brand CP, Gallen CR, Mandelman JW, Butcher PA. Corrigendum to: The acute physiological status of white sharks ( Carcharodon carcharias) exhibits minimal variation after capture on SMART drumlines. Conserv Physiol 2019; 7:coz090. [PMID: 31844521 PMCID: PMC6904248 DOI: 10.1093/conphys/coz090] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Revised: 05/16/2019] [Accepted: 06/10/2019] [Indexed: 06/10/2023]
Abstract
[This corrects the article DOI: 10.1093/conphys/coz042.].
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Affiliation(s)
- R D Tate
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
| | - B R Cullis
- National Institute of Applied Statistics Research Australia, Faculty of Engineering and Information Sciences, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - S D A Smith
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
| | - B P Kelaher
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
| | - C P Brand
- NSW Department of Primary Industries, National Marine Science Centre PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
| | - C R Gallen
- NSW Department of Primary Industries, National Marine Science Centre PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
| | - J W Mandelman
- Anderson Cabot Center for Ocean Life, New England Aquarium, 1 Central Wharf, Boston, MA 02110, USA
| | - P A Butcher
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
- NSW Department of Primary Industries, National Marine Science Centre PO Box 4321, Coffs Harbour, New South Wales 2450, Australia
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Tate RD, Cullis BR, Smith SDA, Kelaher BP, Brand CP, Gallen CR, Mandelman JW, Butcher PA. The acute physiological status of white sharks ( Carcharodon carcharias) exhibits minimal variation after capture on SMART drumlines. Conserv Physiol 2019; 7:coz042. [PMID: 31428427 PMCID: PMC6692849 DOI: 10.1093/conphys/coz042] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Revised: 05/16/2019] [Accepted: 06/10/2019] [Indexed: 05/21/2023]
Abstract
Drumlines incorporating SMART (Shark-Management-Alert-in-Real-Time) technology are a new tool used in several bather protection programmes globally. In New South Wales (NSW), Australia, the white shark (Carcharodon carcharias) is a target species for SMART drumlines because they are often involved in attacks on humans. To understand white shark sensitivity to capture and to establish protocols around acceptable timeframes for responding to alerts, 47 juvenile and subadult white sharks were caught on SMART drumlines at five locations off the east coast of Australia. There was no at-vessel mortality during the sampling period. After capture, blood was sampled from each shark to assess its acute physiological status. Of the 18 metabolites investigated, only lactate and aspartate aminotransferase exhibited significant positive relationships with the capture duration on SMART drumlines. These results indicate that the capture process is relatively benign and that the current response times used here are appropriate to minimize long-term negative impacts on released white sharks. Where white sharks are likely to interact negatively with beachgoers, SMART drumlines can therefore be a useful addition to bather protection programmes that also aim to minimize harm to captured animals. Other shark species captured on SMART drumlines should also be investigated to gain broader understanding of potential physiological consequences of using this new technology.
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Affiliation(s)
- R D Tate
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales, Australia
- Corresponding author: National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales 2450, Australia.
| | - B R Cullis
- National Institute of Applied Statistics Research Australia, Faculty of Engineering and Information Sciences, University of Wollongong, Wollongong, New South Wales, Australia
| | - S D A Smith
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales, Australia
| | - B P Kelaher
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales, Australia
| | - C P Brand
- NSW Department of Primary Industries, National Marine Science Centre PO Box 4321, Coffs Harbour, New South Wales, Australia
| | - C R Gallen
- NSW Department of Primary Industries, National Marine Science Centre PO Box 4321, Coffs Harbour, New South Wales, Australia
| | - J W Mandelman
- Anderson Cabot Center for Ocean Life, New England Aquarium, 1 Central Wharf, Boston, MA, USA
| | - P A Butcher
- National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, New South Wales, Australia
- NSW Department of Primary Industries, National Marine Science Centre PO Box 4321, Coffs Harbour, New South Wales, Australia
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Affiliation(s)
- S. M. Diffey
- Centre for Bioinformatics and Biometrics; University of Wollongong; Wollongong NSW 2522 Australia
| | - A. B. Smith
- Centre for Bioinformatics and Biometrics; University of Wollongong; Wollongong NSW 2522 Australia
| | - A. H. Welsh
- Mathematical Sciences Institute; Australian National University; Canberra ACT 0200 Australia
| | - B. R. Cullis
- Centre for Bioinformatics and Biometrics; University of Wollongong; Wollongong NSW 2522 Australia
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Abstract
This study assessed the mortality of 157 snapper Pagrus auratus (9-29 cm, total length, L(T) ) after being conventionally angled and then released into cages (along with 48 controls) for 4 days off south-eastern Australia. Fatalities were restricted to 12 angled fish (7·6%) and mostly attributed to the ingestion of hooks and especially their subsequent removal, which caused substantial blood loss and immediate death. Hook ingestion was significantly biased towards smaller fish (<21 cm L(T)) and attributed to a lower chance of anglers initially detecting these individuals on the line (allowing them to consume more of the baits). While mortalities might be reduced in future via (1) choosing terminal rigs that promote mouth hooking and (2) cutting the line on any-hook ingested fish, the results nevertheless validate releasing unwanted angled inshore juvenile P. auratus as a means for managing their exploitation.
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Affiliation(s)
- M K Broadhurst
- New South Wales Department of Primary Industries, Fisheries Conservation Technology Unit, National Marine Science Centre, Coffs Harbour, NSW 2450, Australia.
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Beeck CP, Cowling WA, Smith AB, Cullis BR. Analysis of yield and oil from a series of canola breeding trials. Part I. Fitting factor analytic mixed models with pedigree informationThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”. Genome 2010; 53:992-1001. [DOI: 10.1139/g10-051] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In this paper multiplicative mixed models have been used for the analysis of multi-environment trial (MET) data for canola oil and grain yield. Information on pedigrees has been included to allow for the modelling of additive and nonadditive genetic effects. The MET data set included a total of 19 trials (synonymous with sites or environments), which were sown across southern Australia in 2007 and 2008. Each trial was designed as a p-rep design using DiGGeR with the default prespecified spatial model. Lines in their first year of testing were unreplicated, whereas there were two or three replications of advanced lines or varieties. Pedigree information on a total of 578 entries was available, and there were 69 entries that had unknown pedigrees. The degree of inbreeding varied from 0 (55 entries) to nearly fully inbred (337 entries). Subsamples of 2 g harvested grain were taken from each plot for determination of seed oil percentage by near infrared reflectance spectroscopy. The MET analysis for both yield and oil modelled genetic effects in different trials using factor analytic models and the residual plot effects for each trial were modelled using spatial techniques. Models in which pedigree information was included provided significantly better fits to both yield and oil data.
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Affiliation(s)
- C. P. Beeck
- International Centre for Plant Breeding Education and Research, School of Plant Biology and The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- Canola Breeders Western Australia Pty Ltd., 15/219 Canning Highway South Perth, WA 6151, Australia
- Industry & Investment NSW, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW 2650, Australia; and Adjunct Assoc. Prof., School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- School of Mathematics and Applied Statistics, University of Wollongong, Wollongong, NSW 2522, Australia; and Mathematics Informatics and Statistics, CSIRO, Canberra, ACT 2601, Australia
| | - W. A. Cowling
- International Centre for Plant Breeding Education and Research, School of Plant Biology and The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- Canola Breeders Western Australia Pty Ltd., 15/219 Canning Highway South Perth, WA 6151, Australia
- Industry & Investment NSW, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW 2650, Australia; and Adjunct Assoc. Prof., School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- School of Mathematics and Applied Statistics, University of Wollongong, Wollongong, NSW 2522, Australia; and Mathematics Informatics and Statistics, CSIRO, Canberra, ACT 2601, Australia
| | - A. B. Smith
- International Centre for Plant Breeding Education and Research, School of Plant Biology and The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- Canola Breeders Western Australia Pty Ltd., 15/219 Canning Highway South Perth, WA 6151, Australia
- Industry & Investment NSW, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW 2650, Australia; and Adjunct Assoc. Prof., School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- School of Mathematics and Applied Statistics, University of Wollongong, Wollongong, NSW 2522, Australia; and Mathematics Informatics and Statistics, CSIRO, Canberra, ACT 2601, Australia
| | - B. R. Cullis
- International Centre for Plant Breeding Education and Research, School of Plant Biology and The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- Canola Breeders Western Australia Pty Ltd., 15/219 Canning Highway South Perth, WA 6151, Australia
- Industry & Investment NSW, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW 2650, Australia; and Adjunct Assoc. Prof., School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
- School of Mathematics and Applied Statistics, University of Wollongong, Wollongong, NSW 2522, Australia; and Mathematics Informatics and Statistics, CSIRO, Canberra, ACT 2601, Australia
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Panozzo JF, Eckermann PJ, Mather DE, Moody DB, Black CK, Collins HM, Barr AR, Lim P, Cullis BR. QTL analysis of malting quality traits in two barley populations. ACTA ACUST UNITED AC 2007. [DOI: 10.1071/ar06203] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Selection for malting quality traits is a major breeding objective for barley breeding programs. With molecular markers linked to loci affecting these traits, this selection can be undertaken at an earlier stage of the breeding program than is possible using conventional tests. Quantitative trait loci (QTLs) associated with malting quality traits were mapped in 2 populations derived from parents with elite malting quality. Progeny from an Arapiles/Franklin population grown in 4 environments and an Alexis/Sloop population grown in 5 environments were tested for grain protein percentage, α-amylase activity, diastatic power, hot water extract, wort viscosity, wort β-glucan, β-glucanase, and free α-amino acids. QTL analysis was performed using a one-stage approach, which allowed for modelling of spatial variation in the field, and in each phase of the malting quality analysis in the laboratory. QTLs for malting quality traits were detected on all chromosomes and for both populations. Few of these QTLs were significant in all of the environments, indicating that QTL × environment interactions were important. There were many coincident QTLs for traits that are expected to be related such as diastatic power and α-amylase activity, wort β-glucan and wort viscosity and for some traits that are not expected to be related such as hot water extract and malt viscosity.
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Li GD, Helyar KR, Welham SJ, Conyers MK, Castleman LJC, Fisher RP, Evans CM, Cullis BR, Cregan PD. Pasture and sheep responses to lime application in a grazing experiment in a high-rainfall area, south-eastern Australia. I. Pasture production. ACTA ACUST UNITED AC 2006. [DOI: 10.1071/ar05298] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
‘Managing Acid Soils Through Efficient Rotations (MASTER)’ is a long-term pasture–crop rotation experiment commenced in 1992. One of the objectives was to demonstrate the extent of crop, pasture, and animal responses to lime on a typical acidic soil in the 500–800 mm rainfall zone in south-eastern Australia. Two types of pastures (perennial v. annual pastures) with or without lime application were established in 1992. This paper presents the results of the pasture dry matter (DM) responses to lime application over 6 years from 1992 to 1997. Results showed that both perennial and annual pastures responded positively to lime on a highly acidic soil on the south-west slopes of New South Wales. Averaged across pasture types and 5 growing seasons, the limed pastures produced 18% more pasture DM (520 kg/ha, P < 0.05) than the unlimed pastures. Significant responses to lime were detected on perennial pastures (610 kg DM/ha, P < 0.05), but not on annual pastures, although the limed annual pastures produced more DM (420 kg/ha, P = 0.20) than the unlimed annual pastures. There was a large seasonal variation in pasture growth rate with the significant lime responses in winter and spring on both perennial pastures (P < 0.05) and annual pastures (P < 0.10 in winter and P < 0.05 in spring), but no responses in autumn and summer on either perennial or annual pastures. The extra growth in winter is of importance as winter is the period when feed is normally inadequate and limits stocking rates. It is recommended that perennial-based pastures should be promoted for the purposes of productivity, in terms of increasing pasture production and improving feed quality, and for the environmental benefits in terms of alleviating the soil acidity problem and reducing the risk of dryland salinity in the high-rainfall zone in south-eastern Australia.
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Li GD, Helyar KR, Conyers MK, Castleman LJC, Fisher RP, Poile GJ, Lisle CJ, Cullis BR, Cregan PD. Pasture and sheep responses to lime application in a grazing experiment in a high-rainfall area, south-eastern Australia. II. Liveweight gain and wool production. ACTA ACUST UNITED AC 2006. [DOI: 10.1071/ar05299] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
‘Managing Acid Soils Through Efficient Rotations (MASTER)’ is a long-term pasture–crop rotation experiment commenced in 1992. One of the objectives was to demonstrate the extent of crop, pasture, and animal responses to lime application on a typical acidic soil in the 500–800 mm rainfall zone of south-eastern Australia. Two types of pastures (perennial v. annual pastures) with or without lime application were established in 1992. Fifteen- to eighteen-month-old Merino hoggets were used as test animals and were changed annually. This paper reports the results of sheep responses to liming from the 4 continuous pasture treatments over 6 years from 1992 to 1997. The stocking rate was the same on all plots within a treatment during each rotation period, but was varied between treatments based on the pasture availability and sheep body condition. The most important findings from this study are that the limed treatments carried 29% and 27% more stock (up to 4 DSE/ha) than the unlimed treatments for perennial and annual pastures, respectively. As a result, the limed perennial pastures produced 27% more liveweight gain (62 kg/ha.year) and 28% more greasy wool (13 kg/ha.year) than unlimed perennial pastures, whereas the limed annual pastures produced 34% more liveweight gain (77 kg/ha.year) and 24% more greasy wool (11 kg/ha.year) than unlimed annual pastures. The significant responses to lime in liveweight and wool production were detected from the second growing season after the pastures were established. The increased sheep productivity on the limed treatment was due to a combination of increased pasture production and improved pasture quality. Perennial pastures showed a slight advantage in wool production, but not in liveweight gain. However, the seasonal variation of liveweight was greater on annual pastures than on perennial pastures. The larger variation in liveweight change could lead to more adverse effects on wool quality especially at high grazing pressures. Grazing management can be used to manipulate pasture and animal productivity to increase profits from lime use.
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Li GD, Helyar KR, Conyers MK, Cullis BR, Poile GJ, Knight PG. Phalaris persistence under rotational grazing on a highly acidic soil on the south-west slopes of New South Wales. ACTA ACUST UNITED AC 2004. [DOI: 10.1071/ea03047] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Phalaris (Phalaris aquatica L.)-based pastures were established with and without lime in 1992 as a part of a long-term pasture–crop rotation experiment (Managing Acid Soils Through Efficient Rotations). Pre- and post-grazing pasture dry matter, phalaris basal cover and proportion of phalaris in sward were measured since 1992. In general, phalaris persisted well and its productivity was high on the highly acidic soil studied in the current experiment, and this was improved on the limed treatment. After establishment in 1992, the average proportion of phalaris in spring 2001 was 32.1% in the limed treatment and 15.6% in the unlimed treatment. Basal cover at the end of summer 2002 was 4.5% and 2.0% for the limed and unlimed treatments, respectively. The results from the current experiment showed that subsurface acidity (low pHCa and high exchangeable aluminium percentage in the 10–30 cm soil depth) had significant impacts on phalaris persistence. It is concluded that subsurface pH was one of the major constraints for the persistence of phalaris. The long-term management of soil acidity should aim to eliminate the exchangeable aluminium from the soil profile by maintaining a high pHCa (5.5 or above) in the 0–10 cm soil depth. Rainfall during growing season had no direct effect on phalaris persistence. Nevertheless, feed scarcity in dry years due to moisture stress often exacerbated grazing pressure on phalaris, which may affect the phalaris persistence indirectly.
It is the grazing management in autumn and summer that had significant effects on phalaris persistence. It is suggested that rotational grazing plus strategic rest if possible in autumn could prolong the life of phalaris-based pastures. Repeated heavy grazing should be avoided during summer, particularly after light to moderate summer rainfall events have stimulated sprouting.
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Barr AR, Karakousis A, Lance RCM, Logue SJ, Manning S, Chalmers KJ, Kretschmer JM, Boyd WJR, Collins HM, Roumeliotis S, Coventry SJ, Moody DB, Read BJ, Poulsen D, Li CD, Platz GJ, Inkerman PA, Panozzo JF, Cullis BR, Smith AB, Lim P, Langridge P. Mapping and QTL analysis of the barley population Chebec × Harrington. ACTA ACUST UNITED AC 2003. [DOI: 10.1071/ar02215] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A doubled haploid population of 120 individuals was produced from the parents Chebec, an Australian 2-row barley of feed quality with resistance to the cereal cyst nematode, and Harrington, a 2-rowed, Canadian variety of premium malting quality. This paper describes 18 field and laboratory experiments conducted with the population and summarises the traits mapped and analysed. The genomic location of 25 traits and genes is described and marker–trait associations for 5 traits (malt extract, diastatic power, resistance to cereal cyst nematode, early flowering, resistance to pre-harvest sprouting) important to Australian efforts to improve malting barley varieties have been used in practical breeding programs. Detailed maps for these populations are shown in this paper, while a consensus map incorporating these maps and further experiments on the populations are described elsewhere in this issue.
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Li GD, Helyar KR, Evans CM, Wilson MC, Castleman LJC, Fisher RP, Cullis BR, Conyers MK. Effects of lime on the botanical composition of pasture over nine years in a field experiment on the south-western slopes of New South Wales. ACTA ACUST UNITED AC 2003. [DOI: 10.1071/ea01194] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Two permanent pastures (annual pasture v. perennial pasture) were established in 1992 as part of the long-term field experiment, MASTER — Managing Acid Soils Through Efficient Rotations. The primary objective of the experiment was to develop an agricultural system that is economically viable and environmentally sustainable on the highly acidic soils in south-eastern Australia. This paper reports on the effects of lime on the botanical composition changes of annual and perennial pastures over 9 years. In general, lime increased the proportion of the desirable species, such as phalaris (Phalaris aquatica) in perennial pasture and subterranean clover (Trifolium subterraneum) in annual pastures, and decreased the proportion of the undesirable species, such as Vulpia spp., in both annual and perennial pastures, ultimately improving the quality of feed-on-offer to animals. As a result, the limed pastures carried 24% more sheep than the unlimed pastures, while maintaining individual animal performance similar for both limed and unlimed pastures. The phalaris-based perennial pasture was more stable in terms of maintaining the sown species than the annual pasture. Lime improved the persistence of phalaris and the longevity of the phalaris-based pasture should be at least 10 years. Lime changed the direction of plant succession of annual pastures. Without lime, Vulpia spp. gradually became more dominant while ryegrass and subterranean clover became less dominant in annual pastures. With lime, barley grass (Hordeum leporinum) gradually invaded the sward at the expense of ryegrass, thus reducing the benefits of lime, but this effect was less for the perennial pastures than for annual pastures. Liming perennial pastures should be more beneficial than liming annual pastures because of the beneficial effects on pasture composition. In addition, previously published work reported that liming perennial pastures improved sustainability through better use of water and nitrogen.
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Scott BJ, Carpenter DJ, Braysher BD, Cullis BR, Evans CM. Phosphorus fertiliser placement for lupins in southern New South Wales. ACTA ACUST UNITED AC 2003. [DOI: 10.1071/ea01201] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Research in Western Australia and South Australia indicated that fertiliser phosphorus (P) banded below the seed of narrow leaf lupin (Lupinus angustifolius L.) at sowing was a more effective method of applying P�fertiliser than the usual placement of P with the seed. This technology has not been investigated in southern New South Wales where lupins have been known to be unresponsive to fertiliser P.We conducted 4 field experiments to examine the effect on lupin yield of applying 6 rates of P (0, 5, 10, 15, 20 and 40 kg/ha) either by placement with or below the seed. To further test responsiveness to P, an additional set of treatments was used; applying P at 40 kg/ha before sowing and then placing additional P below the seed at the 6�rates of application. The grain yield of lupin was increased by P application at all sites, despite the medium to high P�status of 3 of the 4 sites used in these experiments. However, the technique of banding P fertiliser below the seed depth rather than placing it in direct seed contact had only a small advantage in grain yield responsiveness to applied fertiliser P (P = 0.09). Fitted response curves indicated that when P was applied at 15 kg/ha, grain yield increased by 60 kg/ha at one site and 30 kg/ha at the other 3 sites, if P was deep-placed rather than applied in seed contact. This advantage of deep placement of P fertiliser was much smaller than has been reported in Western Australia.Placement of P below the seed of lupin when sown on the red earth and red-brown earth soils of southern New South Wales slightly enhanced the availability of fertiliser P. This applied even when sowing was quite shallow (2–3�cm), provided recommended rates of P fertiliser were used at conventional row spacing (17 cm). Separation of seed and fertiliser to avoid reduced germination may be an advantage when using double row spacing and higher P�application rates.
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Abstract
This paper presents an analysis of several key barley malting traits from 2 mapping populations grown as a series of multi-environment field trials. The analysis is based on a mixed model that includes terms for all sources of variation in the trait data, namely varieties, variety by trial interaction, variation between plots in the field, and variation between samples in the laboratory processes required to measure the traits. The base-line model is extended to accommodate variance heterogeneity and correlated effects for many of the terms in the model. The results show that accounting for these phenomena may cause substantial changes in variety rankings. The methods of design and analysis proposed in this paper for barley quality trait data do not have common usage so if adopted in future there is an opportunity for substantial improvements in response to selection.
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Verbyla AP, Eckermann PJ, Thompson R, Cullis BR. The analysis of quantitative trait loci in multi-environment trials using a multiplicative mixed model. ACTA ACUST UNITED AC 2003. [DOI: 10.1071/ar02239] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A new approach for multi-environment quantitative trait locus (QTL) analysis based on an appropriate genetic model is presented. To accommodate a multi-environment analysis, the size of a QTL effect is assumed to be a random effect. The approach results in a multiplicative mixed model for QTL × environment interaction of the factor analytic type. The full genetic model may also include a factor analytic model for the residual genotype × environment interaction, whereas the environmental model for the non-genetic variation involves local, global, and extraneous variation. The approach is used to determine QTLs for yield in the Arapiles × Franklin doubled haploid population of the National Barley Molecular Marker Program. Analysis leads to the determination of 8 QTLs. Many of these QTLs are associated with other traits.
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Stringer JK, Cullis BR. Application of spatial analysis techniques to adjust for fertility trends and identify interplot competition in early stage sugarcane selection trials. ACTA ACUST UNITED AC 2002. [DOI: 10.1071/ar01151] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Most sugarcane breeding programs in Australia use large unreplicated trials to evaluate clones in the early stages of selection. Commercial varieties that are replicated provide a method of local control of soil fertility. Although such methods may be useful in detecting broad trends in the field, variation often occurs on a much smaller scale. Methods such as spatial analysis adjust a plot for variability by using information from immediate neighbours. These techniques are routinely used to analyse cereal data in Australia and have resulted in increased accuracy and precision in the estimates of variety effects. In this paper, spatial analyses in which the variability is decomposed into local, natural, and extraneous
components are applied to early selection trials in sugarcane. Interplot competition in cane yield and trend in sugar
content were substantial in many of the trials and there were often large differences in the selections between the
spatial and current method used by the Bureau of Sugar Experiment Stations. A joint modelling approach for tonnes
sugar per hectare in response to fertility trends and interplot competition is recommended.
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Smith AB, Cullis BR, Appels R, Campbell AW, Cornish GB, Martin D, Allen HM. The statistical analysis of quality traits in plant improvement programs with application to the mapping of milling yield in wheat. ACTA ACUST UNITED AC 2001. [DOI: 10.1071/ar01058] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
It is well known that the response to selection for grain yield is improved
with the use of appropriate experimental designs and statistical analyses. The
issues are more complex for quality traits since the data are obtained from a
2-phase process in which samples are collected from the field then processed
in the laboratory. This paper presents a method of analysis for quality trait
data that allows for variation arising from both the field and laboratory
phases. Initially, an analysis suitable for standard varietal selection is
presented. This is extended to include molecular genetic marker information
for the purpose of detecting quantitative trait loci. The technique is
illustrated using two doubled haploid wheat (Triticum aestivum L.) populations
in which the trait of interest is milling yield.
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Abstract
This paper discusses the analysis of quantitative trait loci (QTLs) using
molecular markers from a doubled haploid wheat mapping population arising from
the Cranbrook Halberd cross. Two field trials are used to provide phenotypic
information on the trait of interest, which is grain percentage protein.
Methods for QTL analysis are reviewed together with methods for the analysis
of field trials. The aim of the paper is to examine different approaches for
QTL analysis, namely the conventional approach available in standard software,
which ignores field variation, a 2-stage approach that provides adjusted
phenotypic effects for a subsequent QTL analysis, and a joint marker and
spatial analysis. The major effect, however, is the maturity class of the
doubled haploid lines. Maturity and percent protein appear highly correlated
genetically so QTL analysis shows marked changes if maturity is included as a
covariate. More subtle changes occur due to field variation but this may not
be the standard situation.
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Scott BJ, Fisher JA, Cullis BR. Aluminium tolerance and lime increase wheat yield on the acidic soils of central and southern New South Wales. ACTA ACUST UNITED AC 2001. [DOI: 10.1071/ea00038] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Acidic soils constrain wheat yield in some parts of central and southern New
South Wales. This paper describes research designed to evaluate the usefulness
of aluminium (Al) tolerance, manganese (Mn) tolerance and the interaction of
lime use and Al tolerance in improving wheat yields.
Closely related pairs of wheat lines with tolerance and sensitivity of Al and
Mn were bred. Carazinho (a Brazilian wheat cultivar) was used as a source of
Al tolerance in a backcrossing, recurrent selection program to introduce
tolerance into an Egret background (a locally adapted Australian cultivar).
Aluminium tolerance was determined using the haematoxylin root tip test and Mn
tolerance was determined using a subirrigated gravel bed system. Eight pairs
divergent in tolerance of Al were evaluated for their yield on 3 acidic soil
types in 5 field experiments. Grain yield increased in Egret-derived lines
when Al tolerance from Carazinho was introduced. Yield from the Al-sensitive
genotypes (averaged over the 8 pairs) compared with the Al-tolerant genotypes
was 0.43 to 0.98 t/ha and 0.88 to 1.38 t/ha respectively on an acid
earthy sand in central western New South Wales (Binnaway) in 2 seasons, and
1.08 to 1.96 t/ha and 1.29 to 1.88 t/ha on an acid podsolic soil in
southern New South Wales (Borambola).
On a moderately acidic red earth site (pH Ca 4.8) at
Wagga Wagga, no such advantage accrued to the Al-tolerant group with the
average yield for the sensitive and tolerant pairs being 5.00 and 4.78
t/ha, respectively. Manganese tolerance was assessed in only 1 of these
experiments (Borambola) using 6 pairs of lines tolerant of Al but with
contrasting Mn tolerance. No advantage of Mn tolerance was apparent at this
site.
At Binnaway the tolerant and sensitive lines responded to lime application
with the tolerant lines yielding on average about 0.42 t/ha of grain more
than the sensitive lines even when 5 t/ha of lime was applied. At
Borambola the tolerant lines yielded 0.59 t/ha of grain more than the
sensitive lines when no lime was applied. With lime application this
difference in performance disappeared and Al-tolerant and sensitive lines
yielded equally. At the Wagga Wagga site, the addition of lime did not affect
the yield of the sensitive lines, while the tolerant lines showed a yield
depression of 0.32 t/ha of grain with lime application.
Three different relationships between lime application and Al tolerance were
observed. While 2 relationships fit with our previous understanding, grain
yield depression resulting from the combined use of Al tolerance and lime at
our least acidic site remains poorly understood.
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21
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Li GD, Helyar KR, Conyers MK, Cullis BR, Cregan PD, Fisher RP, Castleman LJC, Poile GJ, Evans CM, Braysher B. Crop responses to lime in long-term pasture-crop rotations in a high rainfall area in south-eastern Australia. ACTA ACUST UNITED AC 2001. [DOI: 10.1071/ar00087] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A long-term trial, known as ‘managing acid soils through efficient
rotations’ (MASTER), commenced in 1992 to develop and demonstrate a
cropping system that is economically viable on the highly acid soils of the
traditional permanent pasture region in south-eastern Australia, so that their
fertility is sustained or improved. There were 2 permanent pasture systems and
2 pasture–crop rotations, each with and without lime. This paper reports
the effect of lime on crop production over the first cycle (6 years). On
annual pasture–crop rotations, lime significantly increased the dry
matter production at anthesis and grain yields of wheat (cv. Dollarbird)
compared with the unlimed treatments. Averaged across years from 1992 to 1997
(excluding the severe drought year 1994), wheat crops produced 1.6 t/ha
more grain on the limed treatments than on the unlimed treatments (3.6
v. 2.0 t/ha). On perennial pasture–crop
rotations, the lime effects varied with crops grown at each phase and year.
For example, despite being tolerant of acidity, oats (cv. Yarran) responded to
lime in 1996. Likewise, triticale (cv. Abacus) responded to lime in 1997.
Wheat (cv. Dollarbird) that is moderately tolerant to acidity responded to
lime in phase 6 from 1992 to 1997 excluding 1994 (3.5 v.
1.7 t/ha). Acid-tolerant wheat varieties, triticale, and narrow-leaf
lupins are considered the most viable crops for the soil and climatic
conditions encountered in this high rainfall (5000—800 mm per annum)
area of south-eastern Australia.
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Orchard BA, Cullis BR, Coombes NE, Virgona JM, Klein T. Grazing management studies within the Temperate Pasture Sustainability Key Program: experimental design and statistical analysis. ACTA ACUST UNITED AC 2000. [DOI: 10.1071/ea98005] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Long-term agricultural experiments such as the
Temperate Pastures Sustainability Key Program (TPSKP) present significant
challenges in the areas of planning and design, conduct, analysis and
reporting. This paper concentrates on 2 aspects, namely, the experimental
design and the statistical analysis.
For long-term agricultural experiments which examine the effects of management
strategies over time, an enumeration of the initial biodiversity is essential
and permits the allocation of treatments to plots in such a way that potential
bias in the estimation of treatment effects due to lack of uniformity in
experimental units (plots) is reduced in the covariate analysis. Spatial
replication is considered essential and the design should include at least 2
starting dates for management strategies so that the possible interaction
between the year of start and the management strategy can be described.
The data resulting from repeated measurement of herbage mass of major
individual species or species groups represent a longitudinal data set with
complexity due to the staggered commencement of treatments and also in part
due to the nature of some of the strategies (closure and cuts). The analysis
presented is the cubic smoothing spline approach of Verbyla
et al. (1999) which integrates cubic splines, random
coefficients, covariance modelling and estimation of systematic deviation.
This approach, based on linear mixed models and using residual maximum
likelihood (REML) has the flexibility to cope with the staggered imposition of
management strategies and permits the partitioning of trends into smooth and
non-smooth components, thereby quantifying species persistence and seasonal
influence under each management strategy.
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Abstract
Summary. Farmers in southern New South Wales began lime
application in the 1980s. Many have now limed most of the acidic soils on
their properties, and are considering reliming. This is an important economic
consideration as lime is a costly input. We accurately located an old lime
experiment established in 1982 and applied and incorporated lime in 1992, to
give factorial combinations of 5 rates of lime applied in 1982 and 5 rates
applied in 1992. The plots were soil sampled and cropped to wheat (cv. Janz)
in both 1992 and 1993.
The rate of soil pHCa decline in the 0–10 cm soil
from 1983 to 1993 following lime application in 1982 was dependent on the
pHCa increase achieved 1 year after lime application
(1983). The rates of decrease varied from 0.10 pHCa
units/year, after 5000 kg/ha was applied, to 0.02
pHCa units/year following application of 500
kg/ha of lime. Evidence in 1992 and 1993 suggested that the
pHCa effect of lime applied in 1982 had moved down the
soil profile below 10 cm.
Wheat yield in 1992 responded to lime applied in 1982 but not to lime applied
in 1992. In the 1993 season, the 1982 and 1992 applied lime gave significant
yield increases. The response in grain yield in 1993 to 1992 applied lime was
greatest where no lime, or low rates of lime, had been applied in 1982. Grain
yield in 1993 was described as a function of pHCa in the
0–10 cm and 10–20 cm layers in that season. Maximum yield of the
aluminium sensitive cultivar Janz was obtained where the
pHCa was about 5.5 in both layers. Where the soil
pHCa was 5.0 in the 0–10 cm soil layer, grain
yield increased with increasing pHCa in the 10–20
cm layer from 3.2 t/ha at pHCa 4.1 to 3.9 t/ha
at pHCa 5.3. Reliming at 2000 kg/ha increased grain
yield in 1993 by about the same amount as an initial application of the same
lime rate.
We suggest that the residual benefit in grain yield was due in part to
movement of the lime effect to the subsurface soil. It appears that maximum
yields may only be achieved with the amendment of the subsurface soil by a
series of lime applications over several decades or by the combined use of
shallow incorporated lime and plant tolerance of soil acidity.
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Abstract
In 2 field experiments, varying lime rates were applied to acidic soils and
incorporated to 10 or 20 cm depth by rotary hoeing. In Expt 2, soil was also
limed in 10-cm layers to 40 cm depth, and the profile was reconstructed. The
aim was to remove acidity as a constraint to plant growth. In both
experiments, 3 cereal cultivars (1 barley and 2 wheat) of varying aluminium
(Al) tolerance were sown. Grain yield was monitored in 4 seasons (Expt 1) or 5
seasons (Expt 2).
Incorporation of lime to 20 cm rather than to 10 cm improved yields of the
cereals in 2 of 4 seasons in Expt 1, and improved yields markedly in a drier
season in Expt 2. In Expt 2, cereal yield was demonstrated to be a function of
soil pHCa in both the 0-10 and 10-20 cm layers. There
was no advantage of amendment to 40 cm depth compared with 20 cm depth at this
site. At both sites, the 10-20 cm soil (corresponding to the upper A2 layer)
was very acidic, and the incorporation of lime to 20 cm removed this barrier.
The effect of amendment or pHCa increase in the 10-20 cm
layer is clearest and most consistent for barley, the most Al-sensitive
species, and least consistent for the tolerant wheat cultivars.
It is probably not realistic in commercial agriculture to incorporate lime to
20 cm depth. The alternative strategies are to wait for the effects of
amendment of the 0-10 cm layer to move down the soil profile, or to amend part
of the soil below 10 cm depth by lime injection. Until the subsurface soil is
amended, the best strategy is to combine surface liming (0-10 cm) with the use
of Al-tolerant cultivars.
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Sandral GA, Dear BS, Pratley JE, Cullis BR. Herbicide dose rate response curves in subterranean clover determined by a bioassay. ACTA ACUST UNITED AC 1997. [DOI: 10.1071/ea96067] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Summary. Herbicide dose response curves were developed
for 5 herbicide treatments, MCPA, 2,4-DB, bromoxynil, MCPA + terbutryn
and MCPA + diuron, when applied to 2 cultivars of subterranean clover
(Trifolium subterraneum L.) in a glasshouse experiment.
The effect of varying spraying time (14 May and 14 June) and leaf stage
(3–4 v. 8–10 trifoliate leaves) at spraying
was also examined.
The dose rate multiple of the recommended rate required to reduce the clover
herbage yield by 50% (I50)
differed markedly between herbicide treatments. The 2 MCPA mixtures were the
most phytotoxic with an I50 value
between 0.45 and 0.83, bromoxynil and MCPA alone were intermediate. 2,4-DB was
the least phytotoxic with an I50
value between 2.36 and 2.94 depending on cultivar and leaf stage at the time
of application.
The effect of leaf stage at spraying, time of spraying and cultivar on
herbicide phytotoxicity was relatively small, the major factors being
herbicide choice (which accounted for 83% of the variation in
I50 values) and rate of herbicide
applied. While there was differential cultivar tolerance to the herbicide
2,4-DB, there was no difference between the cultivars in their response to the
other herbicide treatments.
The phytotoxicity of the herbicides applied at either the 3–4 or
8–10 leaf stage in the glasshouse bioassay was highly correlated
(r = 0.84, P<0.01) with
previous estimates of phytotoxicity determined under field conditions,
although slightly overestimated phytotoxicity compared with field tests.
European Weed Research Council (EWRC) scores of herbicide damage in the
glasshouse bioassay were found to be highly negatively correlated with dry
matter yield losses in both the glasshouse (r =
–0.78 to –0.98, P<0.001) and field
(r = –0.72,
P<0.001) and are therefore an acceptable alternative
where destructive sampling is not practical. The EWRC scoring system was found
to be more effective at quantifying damage where it was manifest as burning or
stunting rather than as leaf distortion. The study indicated that a glasshouse
herbicide bioassay is a useful technique for rapidly screening herbicides for
phytotoxicity on subterranean clover.
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Helyar KR, Cullis BR, Furniss K, Kohn GD, Taylor AC. Changes in the acidity and fertility of a red earth soil under wheat–annual pasture rotations. ACTA ACUST UNITED AC 1997. [DOI: 10.1071/a96069] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
This paper reports the effects of 6 wheat–annual pasture rotations over 18 years on soil N, organic C, P, and pH in a red earth soil at Wagga Wagga (35° 03′ S, 147° 21′E), in southern NSW. There were 3 cropping intensities (33, 50, 67%) with pastures dominated by subterranean clover (Trifolium subterraneum L. cv. Bacchus Marsh) and annual ryegrass (Lolium rigidum Gaud. cv. Wimmera). Rotations were long (6-year) or short (2- or 3-year). Initial soil N and organic C concentrations (0–10 cm) were low, 1300–1400 kg N/ha and 0·7–0·9 g organic C/100 g. The rate of increase of total N in the top 20 cm was the same on short and long rotations, and increased with the proportion of pasture in the rotation from 2·0 to 12·1 to 20·7 kg N/ha · year for pasture to crop ratios of 0·33, 0·50, and 0·67. Estimates of the amounts of N fixed and the measured accumulation of N per pasture year varied within the narrow ranges of 95–113 and 45–64 kg N/ha · pasture year. Organic C increased faster as the proportion of pasture in the rotation increased and there was no evidence that steady-state concentrations were achieved by Year 18. Estimates of the average amount of N leached below 30 cm varied in the range 22–29 kg N/ha · year. Analysis of the individual crop and pasture effects on soil N in the surface 10 cm indicated that net nitrate leaching was greatest in the second pasture year or in the first crop year following 1 year of pasture. A significant amount of N leached during the first 2 or 3 pasture years in a rotation was recovered by the first wheat crop or by the third and fourth year pastures. Second to fourth cereal crops depleted soil N by an amount similar to that removed in the grain. Average grain N% for the rotation treatments was closely described (R2 = 0·96) as a function of the length of the pasture phase, the pasture to crop ratio, and the interaction pasture to crop ratio number of preceding wheat crops. In the top 30 cm the pH changed at a rate near –0·04 units/year on all treatments, equivalent to addition of 2·3–2·8 kmol H+/ha · year. The acid addition rate, and hence the long-term lime requirement (50 kg lime/kmol H+), did not vary with pasture to crop ratio or with the length of the rotation. The proportion of the acid added to the top 30 cm of soil that was contributed from the N cycle (nitrification followed by nitrate loss by leaching below 30 cm or by run-off) was 0·65 for rotations with 67% pasture and 0·80 for rotations with 33% pasture. Carbon cycle acids, produced during organic matter accumulation and the synthesis of products that were subsequently removed, accounted for the remainder. Individual crop and pasture effects on soil pH were near the overall mean of –0·04 units except in years preceding and following the transition from pasture to cereal phases of the rotations. In cereal-dominated rotations the last pasture year was strongly acid (pH decrease 0·13–0·17) and the following cereal year was alkaline (pH increase 0·05–0·08). In pasture-dominated rotations the effects were reversed, the last pasture being alkaline (pH increase 0·07–0·12) and the following cereal being acid (pH decrease 0·13–0·19). In the 50% rotations, effects were intermediate. Organic and inorganic forms of soil P in the surface 10 cm increased linearly with time, accounting for 38% of the applied fertiliser P. Of the applied P, 88% was accounted for by the sum of P accumulated in the surface 20 cm of soil and by removal in products and waste products. The remainder may have been lost by erosion or accumulated in forms resistant to extraction by 0·1 M H2SO4 after ignition at 550°C. There was a slightly greater rate of increase of organic P as the proportion of pasture in the rotation increased. The annual addition of 11·8 kg P/ha·year marginally exceeded the amount required to maintain the available P concentration.
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Cullis BR, Thomson FM, Fisher JA, Gilmour AR, Thompson R. The analysis of the NSW wheat variety database. II. Variance component estimation. Theor Appl Genet 1996; 92:28-39. [PMID: 24166113 DOI: 10.1007/bf00222948] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/1995] [Accepted: 05/26/1995] [Indexed: 06/02/2023]
Abstract
The efficiency of various trialling systems for wheat variety evaluation in New South Wales (NSW) is considered. This involved the estimation of the variance components due to genotype, genotype-by-year, genotype-by-location and genotype-by-year-by-location. It is shown that there is a significant reduction in the magnitude of these variance components by the inclusion of the interaction of genotype maturity, winter habit and aluminium tolerance with environment.
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Affiliation(s)
- B R Cullis
- Agricultural Research Institute, 2650, Wagga Wagga, NSW, Australia
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Cullis BR, Thomson FM, Fisher JA, Gilmour AR, Thompson R. The analysis of the NSW wheat variety database. I. Modelling trial error variance. Theor Appl Genet 1996; 92:21-27. [PMID: 24166112 DOI: 10.1007/bf00222947] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/1995] [Accepted: 05/26/1995] [Indexed: 06/02/2023]
Abstract
The retrospective analysis of a large database on wheat variety testing in New South Wales (NSW) is considered. This analysis involved three key steps. Initially error variance heterogeneity is modelled, indicating significant differences in error variance due to trial location, year of trialling, sowing date and trial mean yield. The implication of this modelling for the estimaion of variance components is discussed.
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Affiliation(s)
- B R Cullis
- Agricultural Research Institute, 2650, Wagga Wagga, NSW, Australia
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Heenan DP, Taylor AC, Cullis BR, Lill WJ. Long term effects of rotation, tillage and stubble management on wheat production in southern NSW. ACTA ACUST UNITED AC 1994. [DOI: 10.1071/ar9940093] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A long term field experiment began in 1979 at Wagga Wagga, N.S.W., to compare the sustainability of a range of rotation, tillage and stubble management systems on a red earth. This paper reports yield, yield components and grain protein of wheat for 1979-90. Rotations considered were alternating lupin-wheat (LW), lupin-wheat-wheat (LWW), continuous wheat (WW) with and without N fertilizer (100 kg N/ha), and alternating sub-clover-wheat (CW). Soil N supply at the start of the experiment was high following many years of sub-clover based pasture. From 1979 to 1983, there was a negative grain yield response to N fertilizer and no response to a legume in rotation except in the drought of 1982 when low yields were recorded from LW. Thereafter, a positive grain yield response was usually produced to N fertilizer in WW rotations, until 1989 and 1990, when these crops displayed aluminium toxicity sym ptoms. Overall, average grain yields from legume rotations were higher than WW with added N fertilizer. Since 1983, LW rotations consistently produced higher mean grain yields than CW, but mean grain protein and total N uptake were lower. Yields and N uptake by the second wheat crop in a LWW rotation indicated little carryover of benefits from the lupins. Slightly higher mean grain yield and harvest index, but lower mean grain protein, were produced by direct drilling, compared with cultivation before sowing, following lupins or sub-clover. However, retaining stubble rather than burning in autumn consistently reduced grain yields. There was no evidence that early burial of wheat stubble following summer rain, rather than incorporation in autumn, improved grain yield or total N uptake. The build-up of giant brome grass and diseases, particularly where stubble was retained and crops direct-drilled, casts some doubt on the long term sustainability of these short term rotations in this environment.
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31
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Prior LD, Grieve AM, Cullis BR. Sodium chloride and soil texture interactions in irrigated field grown sultana grapevines. I. Yield and fruit quality. ACTA ACUST UNITED AC 1992. [DOI: 10.1071/ar9921051] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The effects of the salinity of irrigation water on the productivity of mature grapevines was studied. We injected NaCl solutions into River Murray water to generate five salinity levels ranging from 0.37 to 3.47 dS m-l, with sodium adsorption ratios of between 2 and 37. These treatments were applied through a trickle irrigation system for six years to own-rooted sultana grapevines growing in a vineyard at Dareton, N.S.W. The effect of irrigation water salinity was most severe on vines growing in the most heavily textured soil, and increased with time. The yield (y) response was well described by the generalized logistic function: y = D[1+(ECi/ECih)�]-1 where y is yield, ECi is salinity of irrigation water, D is the theoretical yield at ECi=0, Ecih is the half-effect ECi and a: is the shape parameter. Soil texture affected the response via an effect on ECih and, to a lesser extent, on �. These parameters were related to % (silt & clay) in the final model, which was fitted for each of years 2 to 6 and accounted for 76.2% of the variance in yield. The yield response on the lightest soil most closely resembled the Maas-Hoffman 'bent-stick' model, being relatively flat at low levels of ECi and becoming steeper at moderate salinity levels. Yield losses for heavy soils were much greater than predicted by the Maas-Hoffman model. Bunch number was the primary determinant of yield, while a lower berry weight also contributed to the reduction in yield in salinised vines. Effects on dried fruit quality were apparent only when yield was severely reduced.
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Ellison PJ, Cullis BR, Kable PF. The effect of light and temperature on in vitro germination and germ tube growth of urediniospores of Tranzschelia discolor. ACTA ACUST UNITED AC 1992. [DOI: 10.1071/ar9920451] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The effect of light on in vitro germination of urediniospores of Tranzschelia discolor was studied over time at different intensitities (up to 400 8E m-2 s-l) within the temperature range 5�C to 20�C. A model was also developed from the data to predict germination at different combinations of light, temperature and times of leaf wetness. Light retarded the germination process, and its effect increased in direct proportion to intensity. At 20�C, for example, the time taken to exceed 80% germination increased from 2 h in the dark to 9 h at 200 8E m-2 s-l. The model showed that there was an interaction between light and temperature, with the effect of light becoming more pronounced as the temperature declined below 20�C. Germination percentages of the order of 90% were, however, recorded within 24 h at all combinations of light intensity and temperature studied. Light also influenced germ tube growth, causing a reduction in the rate of growth. As in germination, its effect increased with increasing light intensity. At 20�C, the average germ tube length at 9 h was 541 8m in the dark, compared with 227 8m at 200 8E m-2 s-1 and 148 8m at 400 8E m-2 s-l. A similar effect was observed at 5�C, where the average germ tube length at 24 h was 274 8m in the dark compared with 157 8m at 200 8E m-2 s-l. The effects of light on the germination and germ tube growth of urediniospores under field conditions are discussed.
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Scott BJ, Cullis BR. Subterranean clover pasture responses to lime application on the acid soils of southern New South Wales. ACTA ACUST UNITED AC 1992. [DOI: 10.1071/ea9921051] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The effects of soil amendment with shallow (0-10 cm) incorporated lime or dolomite were examined at 3 sites with acid soils over 6 years. Measurement was made of soil pH and exchangeable cations, and of subterranean clover dry matter production, seed set, and concentrations of calcium, magnesium, manganese, nitrogen and phosphorus. Application of lime or dolomite increased the production of dry matter, but not by the alleviation of molybdenum deficiency. Response in yield ranged from nil to 47%, with most responses in the range 20-35%. Such responses persisted for 5-6 seasons following lime or dolomite application. Differences in soil pH associated with liming were maintained for the 6 years of measurement, so that the benefits in pasture production from soil amendment are likely to accrue beyond the time span of this study. The analyses of plant dry matter indicated that manganese toxicity may have been a factor in the response to lime at 1 harvest, and that higher nitrogen concentration was associated with liming at another. Generally, the plant analyses did not indicate a clear mechanism for the plant responses to lime, although the soil analyses indicated the presence of exchangeable aluminium in the unamended plots at all 3 sites. The plant responses demonstrated that acidity constrained the yield of subterranean clover grown on these soils.
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Prior LD, Grieve AM, Cullis BR. Sodium chloride and soil texture interactions in irrigated field grown sultana grapevines. II. Plant mineral content, growth and physiology. ACTA ACUST UNITED AC 1992. [DOI: 10.1071/ar9921067] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Effects of salinity on the mineral composition, growth and physiology of field-grown sultana grapevines were studied by adding NaCl solution to River Murray water. Five salt treatments, ranging between 0.37 and 3.47 dS m-l, were applied for six seasons. Petiole levels of Cl and Na were better predictors of yield than were lamina levels. There was no evidence of safe threshold salinity levels, so grapevine growers should aim to keep tissue salinity levels as low as possible, certainly below 1.5% and 0.5% for petiole Cl and Na respectively. Yield was affected not only by the salinity of the tissue in the current season, but also by tissue salinity in the preceding seasons. A model was developed which included previous tissue salinity measurements. Salt treatment reduced all growth parameters measured-pruning weight, shoot length, cane number and leaf and petiole weight. Decreases in stomatal conductance and photosynthesis were measured in the field in leaves of salinised vines, but leaf water potential was not affected. These decreases in photosynthetic rate are the probable cause of the severe yield and growth reductions in salinised vines.
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Prior LD, Grieve AM, Slavich PG, Cullis BR. Sodium chloride and soil texture interactions in irrigated field grown sultana grapevines. III. Soil and root system effects. ACTA ACUST UNITED AC 1992. [DOI: 10.1071/ar9921085] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Five salinity treatments, ranging between 0.37 and 3.47 dS m-1, were applied through a trickle irrigation system to own-rooted sultana grapevines for six years. The changes in soil salinity levels and the relationship between soil salinity and yield were studied, and a simplified salt balance model was developed to calculate leaching fractions. Soil salinity was strongly influenced by soil texture as well as by salt treatment, because leaching fractions were lower in heavier soils; they averaged 23% in the lightest soils and 10% in the heaviest. Leaching fractions also increased with salt treatment, from 7% in the 0.37 dS m-1 treatment to 24% in the 3.47 dS m-1 treatment. This was probably because water use by salinized vines was lower. Yield was correlated with mean soil salinity, ECe, but the relationship was not as good as with plant salinity levels. The fitted model accounted for between 52 and 62% of the variance. It was concluded that soil salinity levels at the end of winter should be maintained below 1.0 dS m-1 in order to keep yield losses below 10%. For own-rooted sultana grapevines in Sunraysia, this requires a leaching fraction of about 8%. Rootzone depth and root density were lower in the heavier soils, and were decreased by salt treatment. The deleterious effects of salt treatment on clay dispersion and soil hydraulic conductivity were also greater in the heavier soils. Soil properties must therefore be considered when predicting the effects of saline water on crop productivity, especially in the long term.
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Abstract
Body weight and traits associated with production of wool were measured over a 2-year period between 1985 and 1987 in south-western New South Wales in a flock of Merino wethers experimentally infected with footrot. The disease was allowed to spread freely amongst 150 of the flock but kept at very low prevalence in the remaining 50 by preventive footbathing during transmission periods. Severe, underrunning footrot had a significant adverse effect on body weight, for each year of the trial. Body weight was most severely reduced at times of the year when footrot was spreading among animals and lesions were severe. The mean body weight of the infected group at the end of the 2 years of observation was 7.3 kg (11.6%) below that of the control group. Footrot also depressed wool growth, with the mean clean fleece weight of the infected group being 0.4 kg (8%) lighter than that of the controls at each of the 2 annual shearings. There were no consistent differences between the groups for the other wool characteristics measured.
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Affiliation(s)
- D J Marshall
- New South Wales Agriculture and Fisheries, Wagga Wagga
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Conyers MK, Conyers MK, Poile GJ, Poile GJ, Cullis BR, Cullis BR. Lime responses by barley as related to available soil aluminium and manganese. ACTA ACUST UNITED AC 1991. [DOI: 10.1071/ar9910379] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Twenty-three surface soils (0-10 cm) sampled from major New South Wales lime trials were incubated at six lime rates, from 0 to 10 t/ha, and used in pot trials with barley (Hordeurn vulgare cv. Schooner) which was grown for five weeks. Each replicate pot was soil tested for exchangeable cations (Ca, Mg, K, Na, Mn, Al), pH in 0.01 M CaCl2, and Al in the 0.01 M CaCl2 extract by pyrocatechol violet (total Al) and by reaction for 15 s in 8-hydroxyquinoline (monomeric Al). The latter was also converted to the activity of Al3 in the 0.01 M CaCl2 extract. The soil tests were compared for their prediction of the dry matter yield of whole tops of barley. The four tests for aluminium (exchangeable Al as Al/ECEC; total 0.01 M CaCl2 extractable Al; monomeric 0.01 M CaCl2 extractable Al; and Al3+ activity in 0.01 M CaCl2) were each better indicators of the infertility of the acid soils than soil pH. The prediction of the dry matter yield of barley by the four aluminium tests was improved by the inclusion of exchangeable soil manganese in the statistical analysis. The use of 0.01 M CaCl2 is recommended as a routine extraction procedure for diagnosing Al toxicity. Soil Mn should also be measured and included in correlations with barley growth. Pyrocatechol violet is the recommended analytical procedure for Al owing to its comparative simplicity.
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Cullis BR, McGilchrist CA. A model for the analysis of growth data from designed experiments. Biometrics 1990; 46:131-42. [PMID: 2350567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
A model for growth data from designed experiments is presented which extends the stochastic differential equation of Sandland and McGilchrist (1979, Biometrics 35, 255-272). Residual maximum likelihood (REML) is used to estimate the parameters of the model. The model is easily extended to incomplete data and is shown to overcome some of the practical difficulties encountered with the profile model. The procedure is applied to data from experiments on pigs and sheep.
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Affiliation(s)
- B R Cullis
- Agricultural Research Institute, Wagga Wagga, N.S.W., Australia
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Murray GM, Martin RH, Cullis BR. Relationship of the severity of Septoria tritici blotch of wheat to sowing time, rainfall at heading and average susceptibility of wheat cultivars in the area. ACTA ACUST UNITED AC 1990. [DOI: 10.1071/ar9900307] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The severity of epidemics of Septoria tritici blotch (STB) in wheat, caused by Mycosphaerella graminicola, was recorded for a 38-year period at Temora in southern New South Wales. The disease was rated as severe in 11 years, moderate in 11 and nil to light in 15, while very wet conditions prevented sowing in one year. The correlation of disease severity (S, where 0 =nil, 7 =very severe) with environmental and management factors was examined: the correlation was positive with days from sowing to heading and with rainfall ( R-4W , R+4W, mm) and the number of rainy days in the 4-week periods before and after heading; negative with the time of sowing (DS, day of year) and with mean daily maximum temperature in the 4-week periods before and after heading. Days from sowing to heading were negatively correlated with sowing day, and rainy days and mean daily maximum temperature were correlated with total rainfall in the same time period. Addition of these terms did not significantly improve the prediction of severity. The cumulative sum of the recursive residuals from this regression showed a trend with time that was associated with the average susceptibility (SAV, where 1 =highly resistant, 7 =extremely susceptible) of wheat cultivars to STB grown in the district in the previous year. The second model showed that the reduction of the average susceptibility of cultivars grown in an area will reduce the severity of STB. It provided justification for minimum disease standards for cultivars to be grown where STB is potentially severe. Further, it explained the distribution of severity of STB in New South Wales.
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Slavich PG, Read BJ, Cullis BR. Yield response of barley germplasm to field variation in salinity quantified using the EM-38. ACTA ACUST UNITED AC 1990. [DOI: 10.1071/ea9900551] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Five field trials to screen a range of barley germplasm for tolerance to saline soil conditions were conducted on irrigation farms in southern New South Wales, in areas affected by secondary salinisation from shallow watertables. Three trials were located on heavy grey clay soils and 2 on red-brown earth soils. An electromagnetic soil conductivity meter (EM-38) was used to quantify the salinity of individual field plots. Cultivars were compared in terms of their grain yield response to soil salinity. Yields were significantly reduced by soil salinity at all sites except 1 on red-brown earth. Both genetic and site differences in salinity response were identified. The reduction in yield per unit increase in electrical conductivity of the saturated paste (EC,), averaged across sites, varied from 4.7% for Forrest to 6.6% for Schooner. However, the yield reduction per unit increase in EC,, averaged across cultivars, varied from 4.1% in a red-brown earth to 6.4% in heavy clays.
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Fletcher RJ, Cullis BR. Evaluation of chromosome substitution lines of wheat (Triticum aestivum L.) for freezing injury suffered during the stem elongation stage of development. ACTA ACUST UNITED AC 1988. [DOI: 10.1071/ar9880111] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Eight series of chromosome substitution lines in the Chinese Spring background were subjected to natural freezing stresses during stem elongation. Two of the series were also subjected to an artificial freezing stress at stem elongation. In the series involving the winter cultivar Cheyenne, a major genetic component of the resistance to freezing injury during stem elongation was located in chromosome 5D. Among the seven other series screened in the field, each of the 21 substituted chromosomes was significant in at least one series. Chromosomes most frequently implicated were 3A, 6A, 2D, 4D and 5D. The genetic control of observed tiller mortality following a freezing stress was therefore considered genetically complex.
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Abstract
Field experiments were conducted to determine the effect of varying the density of wheat (cv. Gamut) and wild oats (Avena fatua and A. sterilis ssp. ludoviciana) on the grain yield of wheat. Wheat grain yields were reduced by wild oats through the reduction in number of tillers, and this competitive effect could be reduced by increasing the density of wheat. Increasing wheat plant density beyond the weed-free optimum was found to be unsatisfactory for wild oat control. The best model to describe the data comprised a parabolic wheat yield-density component and a hyperbolic yield loss component. Parameters in the yield-density component were calibrated using 36 data sets to account for variation in sowing date and available soil water. The parabolic model best described the effect of limiting soil water on the wheat yield-density relationship. The yield loss component, which included weed and crop density as variables, indicated that wheat and wild oats behaved as near-equal competitors.The predictive ability of the yield loss model varied when tested on several independent data sets collected from commercial wheat crops. This variation was caused by changes in the relative competitive ability of the crop and weed which resulted in significant variation in values of the yield loss parameters. Further refinement and generalization of the model will be possible if the yield loss parameters can be related to genetic and environmental variables.
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Abstract
The period from sowing to flowering was determined for 8 subterranean clover cultivars sown in late March, late April and late May at 9 environmentally distinct locations in New South Wales. The length of the period to flowering depended on cultivar (ranging from a mean of 1 12 days for Northam to 151 days for Larisa) and site (from a mean of 1 18 days at Grafton to 145 days at Canberra). There was a greater range in the period from sowing to flowering between cultivars at earlier flowering sites compared with late flowering sites. The period from sowing to flowering decreased with later sowings so that clovers sown late (May) flowered on average less than 14 days after those sown early (March). A relationship was developed between temperature and latitude and the period to flowering for each sowing date and cultivar. This relationship accounted for 95% of the variation in flowering time observed in this study and was used to predict with acceptable accuracy the flowering time of subterranean clover cultivars in a study undertaken in Western Australia in 1972 and 1973. We believe the relationship could be useful in predicting flowering time in subterranean clovers.
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Holst PJ, Killeen ID, Cullis BR. Nutrition of the pregnant ewe and its effect on gestation length, lamb birth weight and lamb survival. ACTA ACUST UNITED AC 1986. [DOI: 10.1071/ar9860647] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The nutrition of grazing, pregnant crossbred ewes was managed so that from 6-15 and from 15-20 weeks of pregnancy, ewes were offered either high (H) or low (L) quality and quantity of nutrition as provided by pasture. At one week prior to parturition, the ewes in each of the four treatment groups (HH, HL, LH, LL) were then placed onto good pasture for lambing. Differential nutrition during pregnancy significantly affected gestation length of the ewes, with HH ewes having the shortest gestation. By day 148, 1.6 times more HH ewes had lambed compared with the LL group ewes. Significant differences were observed in lamb birth weight5 with nutrition in the last trimester (15-20 weeks) having a greater influence on birth weight. This was particularly so for twins. There was no significant difference in the survival of the single lambs, but for twin lambs survival was lowest with the LL ewes. These results show the consequences of maintaining or altering nutrition of single- and twin-bearing ewes during pregnancy. Birth weight of twin-born lambs was most responsive. Apart from lambs of the LL group ewes, the weaning weights of surviving lambs were largely unaffected by prenatal nutrition to one week prepartum.
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