Linear and curvilinear effects of inbreeding on production traits for walloon Holstein cows

The nonlinear effects of inbreeding were studied by comparing linear and curvilinear regression models of phenotypic performances on inbreeding coefficients for production traits (milk, fat, and protein yields) of Holstein cows in their first lactation. Three different regression models (linear, quadratic, and cubic) were introduced separately into a single-trait, single-lactation, random regression test-day model. The significance of the different regression coefficients was studied based on a t-test after estimation of error variances and covariances associated with the different regression coefficients. All of the tested regression coefficients were significantly different from 0. The traditional regression coefficients of milk, fat, and protein yields on inbreeding were, respectively, -22.10, -1.10, and -0.72 kg for Holstein cows in their first lactation. However, the estimates of 305-d production losses for various classes of animals based on inbreeding coefficients showed that the effect of inbreeding was not a linear function of the percentage of inbreeding. The 305-d milk yield loss profiles attributable to inbreeding, obtained by the various regression models, were different. However, for inbreeding coefficients between 0 and 10%, these differences were small.

Genetic diversity and joint-pedigree analysis of two importing Holstein populations

Genetic diversity and relatedness between 2 geographically distant Holstein populations (in Luxembourg and Tunisia) were studied by pedigree analysis. These 2 populations have similar sizes and structures and are essentially importing populations. Edited pedigrees included 140,392 and 151,381 animals for Tunisia and Luxembourg, respectively. To partially account for pedigree completeness levels, a modified algorithm was used to compute inbreeding. The effective numbers of ancestors were derived from probabilities of gene origin for the 2 populations of cows born between 1990 and 2000. The 10 ancestors with the highest contributions to genetic diversity in the cow populations accounted for more than 32% of the genes. Eight of these 10 ancestors were the same in both populations. The rates of inbreeding were different in the 2 populations but were generally comparable to those found in the literature for the Holstein breed. Average inbreeding coefficients per year, estimated from the data, ranged from 0.91 and 0.50 in 1990 to 3.10 and 2.12 in 2000 for the Tunisian and Luxembourg populations, respectively. Genetic links have also strengthened with time. Average additive relationships between the 2 populations were as high as 2.2% in 2000. Results suggest that it would be possible to investigate genotype by environment interactions for milk traits using the Tunisian and Luxembourg dairy populations.

Attachment of enteric viruses to bottles

Storage of water that was deliberately contaminated with enteric viruses in polyethylene terephthalate (PET) bottles led to a rapid decrease of the apparent viral load, thereby hampering the development of samples for a collaborative evaluation of viral detection methods for bottled water. To determine if this decrease was due to spontaneous inactivation or to adhesion, an elution protocol was developed and combined with a rapid and sensitive real-time reverse transcription-PCR-based method to quantify adsorbed norovirus (NV), hepatitis A virus (HAV), and rotavirus (RV) on bottle walls. The NV retention on PET bottle walls after 20 and 62 days reached an average level of 85% and 95% of the recovered inoculum, respectively. HAV and RV also showed adsorption onto PET bottles, reaching 90% and 80%, respectively, after 20 days of storage. NV and RV attachment was demonstrated to be dependent on the presence of autochthonous flora, whereas HAV adsorption was independent of it. Application of the elution and viral detection protocol to 294 commercially available water bottles obtained from 25 different countries did not give any positive result, thereby providing further evidence that the sources used for this product are free from enteric viruses and support for the theory that bottled water is not a vehicle for viral diseases.

Variation in Fatty Acid Contents of Milk and Milk Fat Within and Across Breeds

The aim of this research was to study the potential for selection of cows with a higher nutritional quality of milk fat by studying the differences in fatty acid profiles within and across the following breeds: Dual Purpose Belgian Blue, Holstein-Friesian, Jersey, Montbeliarde, and non-Holstein Meuse-Rhine-Yssel type Red and White. Six hundred milk samples from 275 animals were taken from 7 herds. Several types of fatty acids in milk and milk fat were quantified using mid-infrared spectrometry and previously obtained calibration equations. Statistical analyses were made using a mixed linear model with a random animal effect. The variance components were estimated by using REML. Results showed breed differences for the fatty acid profile. The repeatability estimate obtained in the present study may suggest the existence of moderate additive genetic variance for the fatty acid profile within each breed. Results also indicated variation for each analyzed milk component in the whole cow population studied. Genetic improvement of the nutritional quality of milk fat based on fatty acid profiles might be possible, and further research and development are warranted.

Inbreeding depression for global and partial economic indexes, production, type, and functional traits

The objective of this research was to examine the effects of inbreeding in the population of Holstein cattle in the Walloon region of Belgium. The effects of inbreeding on the global economic index and its components were studied by using data from the genetic evaluations of February 2004 for production, somatic cell score (SCS), computed from somatic cell counts and type. Inbreeding coefficients for 956,516 animals were computed using a method that allows assigning an inbreeding coefficient to individuals without known parents. These coefficients were equal to the mean inbreeding coefficient of contemporary individuals with known parents. The significance of inbreeding effects on the different evaluated traits and on the different indexes were tested using a t-test comparing estimated standard errors and effects. The inbreeding effect was significantly different from zero for the vast majority of evaluated traits and for all of the indexes. Inbreeding had the greatest deleterious effects on production traits. Inbreeding decreased yield of milk, fat, and protein during a lactation by 19.68, 0.96, and 0.69 kg, respectively, per each 1% increase in inbreeding. The regression coefficient of SCS per 1% increase in inbreeding was +0.005 SCS units. The inbreeding depression was thus relatively low for SCS, but inbred animals had higher SCS than non-inbred animals, indicating that inbred animals would be slightly more sensitive to mastitis than non-inbred animals. Estimates of inbreeding effects on evaluated type traits per 1% increase were small. The most strongly affected type traits were chest width, rear leg, and overall development on a standardized scale. For several type traits, particularly traits linked to the udder, the estimates suggested a favorable effect of inbreeding. The global economic index was depressed by around 6.13 euro of lifetime profit per 1% increase in inbreeding for the Holstein animals in the Walloon region of Belgium.