1
|
Fréalle E, Gantois N, Aliouat-Denis CM, Leroy S, Zawadzki C, Perkhofer S, Aliouat EM, Dei-Cas E. Comparison of different blood compartments for the detection of circulating DNA using a rat model of Pneumocystis pneumonia. Med Mycol 2015; 53:754-9. [PMID: 26162469 DOI: 10.1093/mmy/myv050] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2015] [Accepted: 05/31/2015] [Indexed: 12/28/2022] Open
Abstract
Pneumocystis is mostly found in the alveolar spaces, but circulation of viable organisms also occurs and suggests that the detection of DNA in blood could be used as a noninvasive procedure to improve the diagnosis of Pneumocystis pneumonia (PcP). In order to determine the optimal compartment for Pneumocystis DNA detection, we used a rat model of PcP and tested the presence of Pneumocystis with a quantitative mtLSU targeting real-time PCR in four blood compartments: whole blood, clot, serum and Platelet-Rich-Plasma (PRP). All samples from 4 Pneumocystis-free control rats were negative. Pneumocystis was detected in 79, 64, 57, and 57% of samples from 14 PcP rats, respectively, but DNA release was not related to pulmonary loads. These data confirm the potential usefulness of Pneumocystis DNA detection in the blood for PcP diagnosis and suggest that whole blood could be the most appropriate compartment for Pneumocystis detection.
Collapse
Affiliation(s)
- E Fréalle
- Centre d'Infection et d'Immunité de Lille (CIIL), Inserm U1019 - CNRS UMR 8204 - Université de Lille, IFR142, Institut Pasteur de Lille, France Laboratoire de Parasitologie-Mycologie, CHRU de Lille & Faculté de Médecine de Lille - Université de Lille, France
| | - N Gantois
- Centre d'Infection et d'Immunité de Lille (CIIL), Inserm U1019 - CNRS UMR 8204 - Université de Lille, IFR142, Institut Pasteur de Lille, France
| | - C M Aliouat-Denis
- Centre d'Infection et d'Immunité de Lille (CIIL), Inserm U1019 - CNRS UMR 8204 - Université de Lille, IFR142, Institut Pasteur de Lille, France Laboratoire de Parasitologie, Faculté de Pharmacie de Lille - Université de Lille, France
| | - S Leroy
- Laboratoire de Parasitologie-Mycologie, CHRU de Lille & Faculté de Médecine de Lille - Université de Lille, France
| | - C Zawadzki
- Laboratoire d'Hématologie & EA2693 Interface sang - vaisseaux et réparation cardiovasculaire, CHRU de Lille & Faculté de Médecine de Lille - Université de Lille, France
| | - S Perkhofer
- University of Applied Sciences Tyrol, Innsbruck, Austria
| | - E M Aliouat
- Centre d'Infection et d'Immunité de Lille (CIIL), Inserm U1019 - CNRS UMR 8204 - Université de Lille, IFR142, Institut Pasteur de Lille, France Laboratoire de Parasitologie, Faculté de Pharmacie de Lille - Université de Lille, France
| | - E Dei-Cas
- Centre d'Infection et d'Immunité de Lille (CIIL), Inserm U1019 - CNRS UMR 8204 - Université de Lille, IFR142, Institut Pasteur de Lille, France Laboratoire de Parasitologie-Mycologie, CHRU de Lille & Faculté de Médecine de Lille - Université de Lille, France
| |
Collapse
|
2
|
Seesao Y, Audebert C, Verrez-Bagnis V, Merlin S, Jérôme M, Viscogliosi E, Dei-Cas E, Aliouat-Denis CM, Gay M. Monitoring of four DNA extraction methods upstream of high-throughput sequencing of Anisakidae nematodes. J Microbiol Methods 2014; 102:69-72. [PMID: 24845469 DOI: 10.1016/j.mimet.2014.05.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Revised: 05/09/2014] [Accepted: 05/09/2014] [Indexed: 11/18/2022]
Abstract
Different methods were evaluated to extract DNA from pooled nematodes belonging to Anisakis, Contracaecum, Pseudoterranova and Hysterothylacium genera isolated from edible fish. Pooled DNA extraction is the first and compulsory step to allow the identification of a large number of samples through high-throughput DNA sequencing with drastic time and cost reductions.
Collapse
Affiliation(s)
- Y Seesao
- ANSES, Lab. Sécurité des Aliments, Dept Produits de la Pêche et de l'Aquaculture, Boulogne-sur-mer, France; Biologie et Diversité des Pathogènes Eucaryotes Emergents, Institut Pasteur de Lille (IPL), Centre d'Infection et d'Immunité de Lille (CIIL), UMR CNRS 8204, Inserm U1019, Univ. Lille Nord de France, France
| | - C Audebert
- Gènes Diffusion, Douai, France; PEGASE-Biosciences, Institut Pasteur de Lille, France
| | | | - S Merlin
- Gènes Diffusion, Douai, France; PEGASE-Biosciences, Institut Pasteur de Lille, France
| | | | - E Viscogliosi
- Biologie et Diversité des Pathogènes Eucaryotes Emergents, Institut Pasteur de Lille (IPL), Centre d'Infection et d'Immunité de Lille (CIIL), UMR CNRS 8204, Inserm U1019, Univ. Lille Nord de France, France
| | - E Dei-Cas
- Biologie et Diversité des Pathogènes Eucaryotes Emergents, Institut Pasteur de Lille (IPL), Centre d'Infection et d'Immunité de Lille (CIIL), UMR CNRS 8204, Inserm U1019, Univ. Lille Nord de France, France
| | - C M Aliouat-Denis
- Biologie et Diversité des Pathogènes Eucaryotes Emergents, Institut Pasteur de Lille (IPL), Centre d'Infection et d'Immunité de Lille (CIIL), UMR CNRS 8204, Inserm U1019, Univ. Lille Nord de France, France.
| | - M Gay
- ANSES, Lab. Sécurité des Aliments, Dept Produits de la Pêche et de l'Aquaculture, Boulogne-sur-mer, France
| |
Collapse
|
3
|
Derouiche S, Deville M, Taylor ML, Akbar H, Guillot J, Carreto-Binaghi LE, Pottier M, Aliouat EM, Aliouat-Denis CM, Dei-Cas E, Demanche C. Pneumocystis diversity as a phylogeographic tool. Mem Inst Oswaldo Cruz 2009; 104:112-7. [DOI: 10.1590/s0074-02762009000100017] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2008] [Accepted: 01/09/2009] [Indexed: 11/22/2022] Open
Affiliation(s)
- S Derouiche
- Faculty of Biological and Pharmaceutical Sciences; Pasteur Institute of Lille, France
| | - M Deville
- National School Veterinary of Alfort, France
| | - ML Taylor
- Universidad Nacional Autónoma de México, México
| | - H Akbar
- Faculty of Biological and Pharmaceutical Sciences; Pasteur Institute of Lille, France
| | - J Guillot
- National School Veterinary of Alfort, France
| | | | - M Pottier
- Faculty of Biological and Pharmaceutical Sciences
| | - EM Aliouat
- Faculty of Biological and Pharmaceutical Sciences; Pasteur Institute of Lille, France
| | - CM Aliouat-Denis
- Faculty of Biological and Pharmaceutical Sciences; Pasteur Institute of Lille, France
| | - E Dei-Cas
- Pasteur Institute of Lille, France; University Hospital Center, France
| | - C Demanche
- Faculty of Biological and Pharmaceutical Sciences; Pasteur Institute of Lille, France
| |
Collapse
|