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Olukayode S, Froese Fischer C, Volkov A. Revisited relativistic Dirac-Hartree-Fock X-ray scattering factors. II. Chemically relevant cations and selected monovalent anions for atoms with Z = 3-112. Acta Crystallogr A Found Adv 2023; 79:229-245. [PMID: 36999622 DOI: 10.1107/s205327332300116x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 02/07/2023] [Indexed: 04/01/2023] Open
Abstract
The previously described approach for determination of the relativistic atomic X-ray scattering factors (XRSFs) at the Dirac-Hartree-Fock level [Olukayode et al. (2023). Acta Cryst. A79, 59-79] has been used to evaluate the XRSFs for a total of 318 species including all chemically relevant cations [Greenwood & Earnshaw (1997). Chemistry of the Elements], six monovalent anions (O-, F-, Cl-, Br-, I-, At-), the ns1np3 excited (valence) states of carbon and silicon, and several exotic cations (Db5+, Sg6+, Bh7+, Hs8+ and Cn2+) for which the chemical compounds have been recently identified, thus significantly extending the coverage relative to all the earlier studies. Unlike the data currently recommended by the International Union of Crystallography (IUCr) [Maslen et al. (2006). International Tables for Crystallography, Vol. C, Section 6.1.1, pp. 554-589], which originate from different levels of theory including the non-relativistic Hartree-Fock and correlated methods, as well as the relativistic Dirac-Slater calculations, the re-determined XRSFs come from a uniform treatment of all species within the same relativistic B-spline Dirac-Hartree-Fock approach [Zatsarinny & Froese Fischer (2016). Comput. Phys. Comm. 202, 287-303] that includes the Breit interaction correction and the Fermi nuclear charge density model. While it was not possible to compare the quality of the generated wavefunctions with that from the previous studies due to a lack (to the best of our knowledge) of such data in the literature, a careful comparison of the total electronic energies and the estimated atomic ionization energies with experimental and theoretical values from other studies instils confidence in the quality of the calculations. A combination of the B-spline approach and a fine radial grid allowed for a precise determination of the XRSFs for each species in the entire 0 ≤ sin θ/λ ≤ 6 Å-1 range, thus avoiding the necessity for extrapolation in the 2 ≤ sin θ/λ ≤ 6 Å-1 interval which, as was shown in the first study, may lead to inconsistencies. In contrast to the Rez et al. work [Acta Cryst. (1994), A50, 481-497], no additional approximations were introduced when calculating wavefunctions for the anions. The conventional and extended expansions were employed to produce interpolating functions for each species in both the 0 ≤ sin θ/λ ≤ 2 Å-1 and 2 ≤ sin θ/λ ≤ 6 Å-1 intervals, with the extended expansions offering a significantly better accuracy at a minimal computational overhead. The combined results of this and the previous study may be used to update the XRSFs for neutral atoms and ions listed in Vol. C of the 2006 edition of International Tables for Crystallography.
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Affiliation(s)
- Shiroye Olukayode
- Department of Chemistry and Computational Science Program, Middle Tennessee State University, Murfreesboro, TN 37132, USA
| | - Charlotte Froese Fischer
- Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, British Columbia V6T1Z4, Canada
| | - Anatoliy Volkov
- Department of Chemistry and Computational Science Program, Middle Tennessee State University, Murfreesboro, TN 37132, USA
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Jönsson P, Gaigalas G, Fischer CF, Bieroń J, Grant IP, Brage T, Ekman J, Godefroid M, Grumer J, Li J, Li W. GRASP Manual for Users. Atoms 2023. [DOI: 10.3390/atoms11040068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023] Open
Abstract
grasp is a software package in Fortran 95, adapted to run in parallel under MPI, for research in atomic physics. The basic premise is that, given a wave function, any observed atomic property can be computed. Thus, the first step is always to determine a wave function. Different properties challenge the accuracy of the wave function in different ways. This software is distributed under the MIT Licence.
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Affiliation(s)
- Per Jönsson
- Department of Materials Science and Applied Mathematics, Malmö University, SE-20506 Malmö, Sweden
| | - Gediminas Gaigalas
- Institute of Theoretical Physics and Astronomy, Vilnius University, LT-010222 Vilnius, Lithuania
| | | | - Jacek Bieroń
- Instytut Fizyki Teoretycznej, Uniwersytet Jagielloński, 30-348 Kraków, Poland
| | - Ian P. Grant
- Mathematical Institute, University of Oxford, Andrew Wiles Building, Woodstock Road, Oxford OX2 6GG, UK
| | - Tomas Brage
- Division of Mathematical Physics, Department of Physics, Lund University, Box 118, SE-22100 Lund, Sweden
| | - Jörgen Ekman
- Department of Materials Science and Applied Mathematics, Malmö University, SE-20506 Malmö, Sweden
| | - Michel Godefroid
- Spectroscopy, Quantum Chemistry and Atmospheric Remote Sensing, Université libre de Bruxelles, B-1050 Bruxelles, Belgium
| | - Jon Grumer
- Theoretical Astrophysics, Department of Physics and Astronomy, Uppsala University, Box 516, SE-751 20 Uppsala, Sweden
| | - Jiguang Li
- No.6 Huayuan Road, Haidian District, Beijing 100088, China
| | - Wenxian Li
- Key Laboratory of Solar Activity, National Astronomical Observatories, Chinese Academy of Sciences, Beijing 100012, China
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Olukayode S, Froese Fischer C, Volkov A. Revisited relativistic Dirac-Hartree-Fock X-ray scattering factors. I. Neutral atoms with Z = 2-118. Acta Crystallogr A Found Adv 2023; 79:59-79. [PMID: 36601764 DOI: 10.1107/s2053273322010944] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 11/15/2022] [Indexed: 12/23/2022] Open
Abstract
In this first of a series of publications, the X-ray scattering factors for neutral atoms are revisited. Using the recently developed DBSR_HF program [Zatsarinny & Froese Fischer (2016). Comput. Phys. Comm. 202, 287-303] the fully relativistic Dirac-Hartree-Fock ground-state wavefunctions for all atoms with Z = 2-118 (He-Og) have been calculated using the extended average level scheme and including both the Breit interaction correction to the electronic motion due to magnetic and retardation effects, and the Fermi distribution function for the description of the nuclear charge density. The comparison of our wavefunctions with those obtained in several previous studies in terms of the total and orbital (spinor) electronic energies, and a number of local and integrated total and orbital properties, confirmed the quality of the generated wavefunctions. The employed dense radial grid combined with the DBSR_HF's B-spline representation of the relativistic one-electron orbitals allowed for a precise integration of the X-ray scattering factors using a newly developed Fortran program SF. Following the established procedure [Maslen et al. (2006). International Tables for Crystallography, Vol. C, Section 6.1.1, pp. 554-589], the resulting X-ray scattering factors have been interpolated in the 0 ≤ sin θ/λ ≤ 2 Å-1 and 2 ≤ sin θ/λ ≤ 6 Å-1 ranges using the recommended analytical functions with both the four- (which is a current convention) and five-term expansions. An exhaustive comparison of the newly generated X-ray scattering factors with the International Union of Crystallography recommended values and those from a number of previous studies showed an overall good agreement and allowed identification of a number of typos and inconsistencies in the recommended quantities. A detailed analysis of the results suggests that the newly derived values may represent an excellent compromise among all the previous studies. The determined conventional interpolating functions for the two sin θ/λ intervals show, on average, the same accuracy as the recommended parametrizations. However, an extension of each expansion by only a single term provides a significant improvement in the accuracy of the interpolated values for an overwhelming majority of the atoms. As such, an updated set of the fully relativistic X-ray scattering factors and the interpolating functions for neutral atoms with Z = 2-118 can be easily incorporated into the existing X-ray diffraction software with only minor modifications. The outcomes of the undertaken research should be of interest to members of the crystallographic community who push the boundaries of the accuracy and precision of X-ray diffraction studies.
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Affiliation(s)
- Shiroye Olukayode
- Department of Chemistry and Computational Science Program, Middle Tennessee State University, Murfreesboro, TN 37132, USA
| | - Charlotte Froese Fischer
- Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, British Columbia V6T1Z4, Canada
| | - Anatoliy Volkov
- Department of Chemistry and Computational Science Program, Middle Tennessee State University, Murfreesboro, TN 37132, USA
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Wang K, Jönsson P, Ekman J, Brage T, Chen CY, Fischer CF, Gaigalas G, Godefroid M. Comment on "Theoretical Confirmation of the Low Experimental 3C/3D f-Value Ratio in Fe xvii". Phys Rev Lett 2017; 119:189301. [PMID: 29219583 DOI: 10.1103/physrevlett.119.189301] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Indexed: 06/07/2023]
Abstract
A Comment on the Letter by Mendoza and Bautista [Phys. Rev. Lett. 118, 163002 (2017)PRLTAO0031-900710.1103/PhysRevLett.118.163002].
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Affiliation(s)
- Kai Wang
- Group for Materials Science and Applied Mathematics, Malmö University, S-20506 Malmö, Sweden
- Hebei Key Lab of Optic-electronic Information and Materials, The College of Physics Science and Technology, Hebei University, Baoding 071002, People's Republic of China
| | - Per Jönsson
- Group for Materials Science and Applied Mathematics, Malmö University, S-20506 Malmö, Sweden
| | - Jörgen Ekman
- Group for Materials Science and Applied Mathematics, Malmö University, S-20506 Malmö, Sweden
| | - Tomas Brage
- Division of Mathematical Physics, Department of Physics, Lund University, 221-00 Lund, Sweden
- Shanghai EBIT Lab, Institute of Modern Physics, Department of Nuclear Science and Technology, Fudan University, Shanghai 200433, People's Republic of China
| | - Chong Yang Chen
- Shanghai EBIT Lab, Institute of Modern Physics, Department of Nuclear Science and Technology, Fudan University, Shanghai 200433, People's Republic of China
| | - Charlotte Froese Fischer
- Department of Computer Science, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Gediminas Gaigalas
- Institute of Theoretical Physics and Astronomy, Vilnius University, LT-10222 Vilnius, Lithuania
| | - Michel Godefroid
- Chimie Quantique et Photophysique, Université libre de Bruxelles, B-1050 Brussels, Belgium
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Abstract
An algorithm for the solution of the pair equation for helium is described, suitable for concurrent vector pro cessors. Emphasis is placed on minimizing memory re quirements so that the technique may be extended to systems with more electrons. The pair function is ex panded in a series of partial waves whose radial factor is represented by a tensor product of B-splines. Perfor mance is analyzed for the ground and first excited 1 S state, and for the lowest 3 S and 1,3 P states. An odd-even, column Nesbet algorithm is derived for solving the gen eralized eigenvalue problem and is shown to converge in all cases.
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Godefroid M, Fischer CF. MCHF-BP fine-structure splittings and transition rates for the ground configuration in the nitrogen sequence. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0022-3700/17/5/008] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Olsen J, Godefroid MR, Jönsson P, Malmqvist P, Fischer CF. Transition probability calculations for atoms using nonorthogonal orbitals. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics 1995; 52:4499-4508. [PMID: 9963923 DOI: 10.1103/physreve.52.4499] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Bieron J, Parpia FA, Fischer CF, Jönsson P. Large-scale multiconfiguration Dirac-Fock calculations of hyperfine interaction constants for nd2 levels of Sc+ and Y+. Phys Rev A 1995; 51:4603-4610. [PMID: 9912149 DOI: 10.1103/physreva.51.4603] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Fischer CF, Hansen JE. Ab initio studies of the 4s4p2 4P state in Ca-. Phys Rev A 1995; 51:1999-2004. [PMID: 9911811 DOI: 10.1103/physreva.51.1999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Ynnerman A, Fischer CF. Multiconfigurational-Dirac-Fock calculation of the 2s2 1S0-2s2p 3P1 spin-forbidden transition for the Be-like isoelectronic sequence. Phys Rev A 1995; 51:2020-2030. [PMID: 9911814 DOI: 10.1103/physreva.51.2020] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Brage T, Fischer CF. Spline-Galerkin methods applied to Rydberg series between the 4s 2S and 3d 2D limits of calcium. Phys Rev A 1994; 50:2937-2947. [PMID: 9911236 DOI: 10.1103/physreva.50.2937] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Brage T, Fischer CF, Jönsson P. Effects of core-valence and core-core correlation on the line strength of the resonance lines in Li I and Na I. Phys Rev A 1994; 49:2181-2184. [PMID: 9910471 DOI: 10.1103/physreva.49.2181] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Jönsson P, Fischer CF. Large-scale multiconfiguration Hartree-Fock calculations of hyperfine-interaction constants for low-lying states in beryllium, boron, and carbon. Phys Rev A 1993; 48:4113-4123. [PMID: 9910112 DOI: 10.1103/physreva.48.4113] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Parpia FA, Tong M, Fischer CF. Relativistic calculations of nuclear motional effects in many-electron atoms. Phys Rev A 1992; 46:3717-3724. [PMID: 9908561 DOI: 10.1103/physreva.46.3717] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Schuessler HA, Alousi A, Idrees M, Li YF, Buchinger F, Evans RM, Fischer CF. Isotope shifts and hyperfine-structure-splitting constants of the 4d-5p transition of Kr II at lambda =729 nm. Phys Rev A 1992; 45:6459-6467. [PMID: 9907769 DOI: 10.1103/physreva.45.6459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Davidson ER, Hagstrom SA, Chakravorty SJ, Umar VM, Fischer CF. Ground-state correlation energies for two- to ten-electron atomic ions. Phys Rev A 1991; 44:7071-7083. [PMID: 9905848 DOI: 10.1103/physreva.44.7071] [Citation(s) in RCA: 204] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Fischer CF. Variational predictions of transition energies and electron affinities: He and Li ground states and Li, Be, and Mg core-excited states. Phys Rev A 1990; 41:3481-3488. [PMID: 9903518 DOI: 10.1103/physreva.41.3481] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Morrison JC, Fischer CF. Multiconfiguration Hartree-Fock method and many-body perturbation theory: A unified approach. Phys Rev A Gen Phys 1987; 35:2429-2439. [PMID: 9898430 DOI: 10.1103/physreva.35.2429] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Fischer CF. Energy levels and lifetimes for some core-excited quartet states in Na I and Mg II. Phys Rev A Gen Phys 1986; 34:1667-1676. [PMID: 9897445 DOI: 10.1103/physreva.34.1667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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