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Allakhverdiev ES, Kossalbayev BD, Sadvakasova AK, Bauenova MO, Belkozhayev AM, Rodnenkov OV, Martynyuk TV, Maksimov GV, Allakhverdiev SI. Spectral insights: Navigating the frontiers of biomedical and microbiological exploration with Raman spectroscopy. J Photochem Photobiol B 2024; 252:112870. [PMID: 38368635 DOI: 10.1016/j.jphotobiol.2024.112870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/04/2024] [Accepted: 02/14/2024] [Indexed: 02/20/2024]
Abstract
Raman spectroscopy (RS), a powerful analytical technique, has gained increasing recognition and utility in the fields of biomedical and biological research. Raman spectroscopic analyses find extensive application in the field of medicine and are employed for intricate research endeavors and diagnostic purposes. Consequently, it enjoys broad utilization within the realm of biological research, facilitating the identification of cellular classifications, metabolite profiling within the cellular milieu, and the assessment of pigment constituents within microalgae. This article also explores the multifaceted role of RS in these domains, highlighting its distinct advantages, acknowledging its limitations, and proposing strategies for enhancement.
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Affiliation(s)
- Elvin S Allakhverdiev
- National Medical Research Center of Cardiology named after academician E.I. Chazov, Academician Chazov 15А St., Moscow 121552, Russia; Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Leninskie Gory 1/12, Moscow 119991, Russia.
| | - Bekzhan D Kossalbayev
- Ecology Research Institute, Khoja Akhmet Yassawi International Kazakh-Turkish University, Turkistan, Kazakhstan; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, No. 32, West 7th Road, Tianjin Airport Economic Area, 300308 Tianjin, China; Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty 050038, Kazakhstan; Department of Chemical and Biochemical Engineering, Institute of Geology and Oil-Gas Business Institute Named after K. Turyssov, Satbayev University, Almaty 050043, Kazakhstan
| | - Asemgul K Sadvakasova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty 050038, Kazakhstan
| | - Meruyert O Bauenova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty 050038, Kazakhstan
| | - Ayaz M Belkozhayev
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty 050038, Kazakhstan; Department of Chemical and Biochemical Engineering, Institute of Geology and Oil-Gas Business Institute Named after K. Turyssov, Satbayev University, Almaty 050043, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Oleg V Rodnenkov
- National Medical Research Center of Cardiology named after academician E.I. Chazov, Academician Chazov 15А St., Moscow 121552, Russia
| | - Tamila V Martynyuk
- National Medical Research Center of Cardiology named after academician E.I. Chazov, Academician Chazov 15А St., Moscow 121552, Russia
| | - Georgy V Maksimov
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Leninskie Gory 1/12, Moscow 119991, Russia
| | - Suleyman I Allakhverdiev
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia; Institute of Basic Biological Problems, FRC PSCBR Russian Academy of Sciences, Pushchino 142290, Russia; Faculty of Engineering and Natural Sciences, Bahcesehir University, Istanbul, Turkey.
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Yusipovich AI, Allakhverdiev ES, Parshina EY, Pirutin SK, Silicheva MA, Rodnenkov OV, Martynyuk TV, Maksimov GV. Hemoglobin Heme Conformation in Patients with Different Oxygen Saturation Values. J-BPE 2022. [DOI: 10.18287/jbpe22.08.040505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The characteristics of prosthetic group of hemoglobin – heme at different values of the oxygen saturation (sO2) was studied in human whole blood of patients with various clinical forms of coronary heart disease using the method of Raman spectroscopy. Correlation between the values of ratios of Raman spectra bands (1375 and 1355 & 1588 and 1552 cm–1, correspondingly) and oxygen saturation was shown. Based on the analysis of the Raman spectra, it is directly shown that at low sO2 the streatching of the heme ring comes before the binding of the bivalent iron atom to the oxygen molecule. It is probably caused by the cooperative effect (the attachment of a ligand to one heme leads to a change in of the protein and therefore the conformations of other hemes without ligands).
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Allakhverdiev ES, Khabatova VV, Kossalbayev BD, Zadneprovskaya EV, Rodnenkov OV, Martynyuk TV, Maksimov GV, Alwasel S, Tomo T, Allakhverdiev SI. Raman Spectroscopy and Its Modifications Applied to Biological and Medical Research. Cells 2022; 11:cells11030386. [PMID: 35159196 PMCID: PMC8834270 DOI: 10.3390/cells11030386] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/17/2022] [Accepted: 01/22/2022] [Indexed: 02/06/2023] Open
Abstract
Nowadays, there is an interest in biomedical and nanobiotechnological studies, such as studies on carotenoids as antioxidants and studies on molecular markers for cardiovascular, endocrine, and oncological diseases. Moreover, interest in industrial production of microalgal biomass for biofuels and bioproducts has stimulated studies on microalgal physiology and mechanisms of synthesis and accumulation of valuable biomolecules in algal cells. Biomolecules such as neutral lipids and carotenoids are being actively explored by the biotechnology community. Raman spectroscopy (RS) has become an important tool for researchers to understand biological processes at the cellular level in medicine and biotechnology. This review provides a brief analysis of existing studies on the application of RS for investigation of biological, medical, analytical, photosynthetic, and algal research, particularly to understand how the technique can be used for lipids, carotenoids, and cellular research. First, the review article shows the main applications of the modified Raman spectroscopy in medicine and biotechnology. Research works in the field of medicine and biotechnology are analysed in terms of showing the common connections of some studies as caretenoids and lipids. Second, this article summarises some of the recent advances in Raman microspectroscopy applications in areas related to microalgal detection. Strategies based on Raman spectroscopy provide potential for biochemical-composition analysis and imaging of living microalgal cells, in situ and in vivo. Finally, current approaches used in the papers presented show the advantages, perspectives, and other essential specifics of the method applied to plants and other species/objects.
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Affiliation(s)
- Elvin S. Allakhverdiev
- Russian National Medical Research Center of Cardiology, 3rd Cherepkovskaya St., 15A, 121552 Moscow, Russia; (E.S.A.); (O.V.R.); (T.V.M.)
- Biology Faculty, Lomonosov Moscow State University, Leninskie Gory 1/12, 119991 Moscow, Russia;
| | - Venera V. Khabatova
- K.A. Timiryazev Institute of Plant Physiology, RAS, Botanicheskaya str., 35, 127276 Moscow, Russia; (V.V.K.); (E.V.Z.)
| | - Bekzhan D. Kossalbayev
- Geology and Oil-gas Business Institute Named after K. Turyssov, Satbayev University, Satpaeva, 22, Almaty 050043, Kazakhstan;
- Department of Biotechnology, Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Al-Farabi Avenue 71, Almaty 050038, Kazakhstan
| | - Elena V. Zadneprovskaya
- K.A. Timiryazev Institute of Plant Physiology, RAS, Botanicheskaya str., 35, 127276 Moscow, Russia; (V.V.K.); (E.V.Z.)
| | - Oleg V. Rodnenkov
- Russian National Medical Research Center of Cardiology, 3rd Cherepkovskaya St., 15A, 121552 Moscow, Russia; (E.S.A.); (O.V.R.); (T.V.M.)
| | - Tamila V. Martynyuk
- Russian National Medical Research Center of Cardiology, 3rd Cherepkovskaya St., 15A, 121552 Moscow, Russia; (E.S.A.); (O.V.R.); (T.V.M.)
| | - Georgy V. Maksimov
- Biology Faculty, Lomonosov Moscow State University, Leninskie Gory 1/12, 119991 Moscow, Russia;
- Department of Physical Materials Science, Technological University “MISiS”, Leninskiy Prospekt 4, Office 626, 119049 Moscow, Russia
| | - Saleh Alwasel
- Zoology Department, College of Science, King Saud University, Riyadh 12372, Saudi Arabia;
| | - Tatsuya Tomo
- Department of Biology, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan;
| | - Suleyman I. Allakhverdiev
- K.A. Timiryazev Institute of Plant Physiology, RAS, Botanicheskaya str., 35, 127276 Moscow, Russia; (V.V.K.); (E.V.Z.)
- Zoology Department, College of Science, King Saud University, Riyadh 12372, Saudi Arabia;
- Institute of Basic Biological Problems, RAS, Pushchino, 142290 Moscow, Russia
- Correspondence:
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Knox PP, Lukashev EP, Korvatovskii BN, Seifullina NK, Goryachev SN, Allakhverdiev ES, Paschenko VZ. Effect of Dipyridamole on Membrane Energization and Energy Transfer in Chromatophores of Rba. sphaeroides. Biochemistry (Mosc) 2022; 87:1138-1148. [PMID: 36273882 PMCID: PMC9568914 DOI: 10.1134/s0006297922100078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Effect of dipyridamole (DIP) at concentrations up to 1 mM on fluorescent characteristics of light-harvesting complexes LH2 and LH1, as well as on conditions of photosynthetic electron transport chain in the bacterial chromatophores of Rba. sphaeroides was investigated. DIP was found to affect efficiency of energy transfer from the light-harvesting complex LH2 to the LH1-reaction center core complex and to produce the long-wavelength ("red") shift of the absorption band of light-harvesting bacteriochlorophyll molecules in the IR spectral region at 840-900 nm. This shift is associated with the membrane transition to the energized state. It was shown that DIP is able to reduce the photooxidized bacteriochlorophyll of the reaction center, which accelerated electron flow along the electron transport chain, thereby stimulating generation of the transmembrane potential on the chromatophore membrane. The results are important for clarifying possible mechanisms of DIP influence on the activity of membrane-bound functional proteins. In particular, they might be significant for interpreting numerous therapeutic effects of DIP.
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Affiliation(s)
- Peter P. Knox
- Faculty of Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
| | - Eugene P. Lukashev
- Faculty of Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
| | | | | | - Sergey N. Goryachev
- Faculty of Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
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Todorenko DA, Hao J, Slatinskaya OV, Allakhverdiev ES, Khabatova VV, Ivanov AD, Radenovic CN, Matorin DN, Alwasel S, Maksimov GV, Allakhverdiev SI. Effect of thiamethoxam on photosynthetic pigments and primary photosynthetic reactions in two maize genotypes (Zea mays). Funct Plant Biol 2021; 48:994-1004. [PMID: 34210384 DOI: 10.1071/fp21134] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 06/02/2021] [Indexed: 06/13/2023]
Abstract
Neonicotinoid insecticides are used against the wide range of pests to protect plants. The influence of neonicotinoids on target and non-target insects is well understood. Hence, there are controversial opinions about the effect of neonicotinoids on the plants. We investigated pigments and photosynthetic primary reactions in two maize genotypes (the inbred line zppl 225 and hybrid zp 341) under thiamethoxam (TMX) treatment by root irrigation. It was found that the effect of TMX depended on pesticide application techniques and selection of maize genotype. TMX was added to the soil by root irrigation on the 4th and 8th days after planting, and photosynthetic characteristics monitored on the 10th and 12th days after planting. The primary photochemical reactions in PSII (Fv/Fm) of both maize genotypes were not affected under two variants of TMX treatment during all growing period. The hybrid zp341 was shown to be more susceptible to both TMX treatments, demonstrating a decrease in photosynthetic characteristics (JIP-test parameters) as well as changes in the content of pigments and in the conformation of the carotenoid molecule. Our findings suggest that the combination of fluorescence method and Raman spectroscopy is a perspective tool for monitoring plant state under pesticide application.
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Affiliation(s)
- Daria A Todorenko
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory, Moscow 119991, Russian Federation
| | - Jingrao Hao
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory, Moscow 119991, Russian Federation
| | - Olga V Slatinskaya
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory, Moscow 119991, Russian Federation
| | - Elvin S Allakhverdiev
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory, Moscow 119991, Russian Federation; and Russian National Medical Research Centre of Cardiology, 3rd Cherepkovskaya Street, 15A, Moscow 121552, Russian Federation
| | - Venera V Khabatova
- KA Timiryazev Institute of Plant Physiology RAS, Botanicheskaya Street, 35, Moscow 127276, Russian Federation
| | - Aleksey D Ivanov
- Federal State Autonomous Educational Institution of Higher Education 'National Research Technological University 'MISiS', Leninskiy Avenue 4, Moscow 119049, Russian Federation
| | - Cedomir N Radenovic
- Maise Research Institute, Zemun Polje, Belgrade, Republic of Serbia; and University of Belgrade, Faculty of Physical Chemistry, Belgrade, Republic of Serbia
| | - Dmitry N Matorin
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory, Moscow 119991, Russian Federation
| | - Saleh Alwasel
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Georgy V Maksimov
- Lomonosov Moscow State University, Faculty of Biology, Leninskie Gory, Moscow 119991, Russian Federation; and Federal State Autonomous Educational Institution of Higher Education 'National Research Technological University 'MISiS', Leninskiy Avenue 4, Moscow 119049, Russian Federation; and Corresponding authors. ;
| | - Suleyman I Allakhverdiev
- KA Timiryazev Institute of Plant Physiology RAS, Botanicheskaya Street, 35, Moscow 127276, Russian Federation; and Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia; and Institute of Basic Biological Problems RAS, Pushchino, Moscow Region 142290, Russian Federation; and Corresponding authors. ;
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Allakhverdiev ES, Maksimov GV, Rodnenkov OV, Luneva OG, Tsoraev GV, Ivanov AD, Yusipovich AI, Martynyuk TV. Effect of Dinitrosyl Iron Complex on Albumin Conformation. Biochemistry (Mosc) 2021; 86:533-539. [PMID: 33993863 DOI: 10.1134/s0006297921050023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Binding of dinitrosyl iron complex (DNIC) to albumin was studied using time-resolved fluorescence (TRF) and electron spin resonance (ESR) spectroscopy. It was found that the fluorescence lifetime of bovine serum albumin (BSA) and human serum albumin (HSA) decreases with binding and depends on DNIC concentration. The observed biexponential pattern of the BSA tryptophan (Trp) fluorescence decay is explained by the presence of two tryptophan residues in the protein molecule. We believe that DNIC forms stable complexes with the cysteine (Cys34) residue in the domain I of albumin. It was shown that the lifetime of albumin tryptophan fluorescence decreased during co-incubation of BSA with DNICs and glutathione. Effects of DNIC on the binding of specific spin-labeled fatty acids with albumin in human blood plasma were studied in vitro. The presence of DNIC in blood plasma does not change conformation of albumin domains II and III. We suggest that the most possible interaction between DNICs and albumin is the formation of a complex; and nitrosylation of the cysteine residue in the albumin domain I occurs without the changes in albumin conformation.
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Affiliation(s)
- Elvin S Allakhverdiev
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia. .,Russian National Medical Research Center of Cardiology, Moscow, 121552, Russia
| | - Georgy V Maksimov
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia. .,Federal State Autonomous Educational Institution of Higher Education "National Research Technological University "MISIS", Moscow, 119049, Russia
| | - Oleg V Rodnenkov
- Russian National Medical Research Center of Cardiology, Moscow, 121552, Russia
| | - Oksana G Luneva
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Georgy V Tsoraev
- Faculty of Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Aleksey D Ivanov
- Federal State Autonomous Educational Institution of Higher Education "National Research Technological University "MISIS", Moscow, 119049, Russia
| | | | - Tamila V Martynyuk
- Russian National Medical Research Center of Cardiology, Moscow, 121552, Russia
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Tugaeva KV, Faletrov YV, Allakhverdiev ES, Shkumatov VM, Maksimov EG, Sluchanko NN. Effect of the NBD-group position on interaction of fluorescently-labeled cholesterol analogues with human steroidogenic acute regulatory protein STARD1. Biochem Biophys Res Commun 2018; 497:58-64. [DOI: 10.1016/j.bbrc.2018.02.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 02/02/2018] [Indexed: 10/18/2022]
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Rodionova NN, Allakhverdiev ES, Maksimov GV. Study of myelin structure changes during the nerve fibers demyelination. PLoS One 2017; 12:e0185170. [PMID: 28934355 PMCID: PMC5608327 DOI: 10.1371/journal.pone.0185170] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2017] [Accepted: 09/07/2017] [Indexed: 11/24/2022] Open
Abstract
Raman, NMR and EPR spectroscopy and electrophysiology methods were used to investigate the excitability and the packaging of myelin lipid layers and its viscosity during nerve exposure to pronase E. It was established that during exposure of nerve to pronase E the action potential (AP) conduction velocity and the Schwann cell (SC) (or myelin) water ordering increases, but the nerve myelin refractive index and internode incisions numbers decrease. This effect included two periods–short- and long-time period, probably, because the first one depends on SC protein changes and the second one–on the nerve fiber internode demyelination. It was concluded that high electrical resistance of myelin, which is important for a series of AP conduction velocity, not only depends on nerve fiber diameter and the myelin lipid composition, but also on the regularity of myelin lipid fatty acids and myelin lipid layer packing during the axoglial interaction.
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Affiliation(s)
| | | | - Georgy V. Maksimov
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
- * E-mail:
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Verdiyan EE, Allakhverdiev ES, Maksimov GV. Study of the Peripheral Nerve Fibers Myelin Structure Changes during Activation of Schwann Cell Acetylcholine Receptors. PLoS One 2016; 11:e0158083. [PMID: 27455410 PMCID: PMC4959681 DOI: 10.1371/journal.pone.0158083] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 06/09/2016] [Indexed: 11/19/2022] Open
Abstract
In the present paper we consider a new type of mechanism by which neurotransmitter acetylcholine (ACh) regulates the properties of peripheral nerve fibers myelin. Our data show the importance of the relationship between the changes in the number of Schwann cell (SC) acetylcholine receptors (AChRs) and the axon excitation (different intervals between action potentials (APs)). Using Raman spectroscopy, an effect of activation of SC AChRs on the myelin membrane fluidity was investigated. It was found, that ACh stimulates an increase in lipid ordering degree of the myelin lipids, thus providing evidence for specific role of the “axon-SC” interactions at the axon excitation. It was proposed, that during the axon excitation, the SC membrane K+- depolarization and the Ca2+—influx led to phospholipase activation or exocytosis of intracellular membrane vesicles and myelin structure reorganization.
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Affiliation(s)
| | | | - Georgy V. Maksimov
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
- Faculty of Fundamental Medicine, M.V. Lomonosov Moscow State University, Moscow, Russia
- * E-mail:
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