1
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Stavroglou GK, Tylianakis E, Froudakis GE. Tailoring ammonia capture in MOFs and COFs: A multi-scale and machine learning comprehensive investigation of functional group modification. Chemphyschem 2024; 25:e202300721. [PMID: 38446052 DOI: 10.1002/cphc.202300721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 01/22/2024] [Indexed: 03/07/2024]
Abstract
Our study aims to examine the impact of ligand functionalization on the ammonia adsorption properties of MOFs and COFs, by combining multi-scale calculations with machine learning techniques. Density Functional Theory calculations were performed to investigate the interactions between ammonia (NH3) and a comprehensive set of 48 strategically chosen functional groups. In all of the cases, it is observed that functionalized rings exhibit a stronger interaction with ammonia molecule compared to unfunctionalized benzene, while -O2Mg demonstrates the highest interaction energy with ammonia (15 times stronger than the bare benzene). The trend obtained from the thorough DFT screening is verified via Grand Canonical Monte-Carlo calculations by employing interatomic potentials derived from quantum chemical calculations. Isosteric heat of adsorption plots provide a comprehensive elucidation of the adsorption process, and important insights can be taken for studies in fine-tuning materials for ammonia adsorption. Furthermore, a proof of concept machine learning (ML) analysis is conducted, which demonstrates that ML can accurately predict NH3 binding energies despite the limited amount of data. The findings derived from our multi-scale methodology indicate that the functionalization strategy can be utilized to guide synthesis towards MOFs, COFs, or other porous materials for enhanced NH3 adsorption capacity.
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Affiliation(s)
- Georgios K Stavroglou
- Department of Chemistry, University of Crete, Voutes Campus, GR-70013, Heraklion, Crete, Greece
| | - Emmanuel Tylianakis
- Department of Chemistry, University of Crete, Voutes Campus, GR-70013, Heraklion, Crete, Greece
- Department of Materials Science and Technology, University of Crete, Voutes Campus, GR-70013, Heraklion, Crete, Greece
| | - George E Froudakis
- Department of Chemistry, University of Crete, Voutes Campus, GR-70013, Heraklion, Crete, Greece
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2
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Sarikas AP, Gkagkas K, Froudakis GE. Gas adsorption meets deep learning: voxelizing the potential energy surface of metal-organic frameworks. Sci Rep 2024; 14:2242. [PMID: 38278851 PMCID: PMC10817925 DOI: 10.1038/s41598-023-50309-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 12/17/2023] [Indexed: 01/28/2024] Open
Abstract
Intrinsic properties of metal-organic frameworks (MOFs), such as their ultra porosity and high surface area, deem them promising solutions for problems involving gas adsorption. Nevertheless, due to their combinatorial nature, a huge number of structures is feasible which renders cumbersome the selection of the best candidates with traditional techniques. Recently, machine learning approaches have emerged as efficient tools to deal with this challenge, by allowing researchers to rapidly screen large databases of MOFs via predictive models. The performance of the latter is tightly tied to the mathematical representation of a material, thus necessitating the use of informative descriptors. In this work, a generalized framework to predict gaseous adsorption properties is presented, using as one and only descriptor the capstone of chemical information: the potential energy surface (PES). In order to be machine understandable, the PES is voxelized and subsequently a 3D convolutional neural network (CNN) is exploited to process this 3D energy image. As a proof of concept, the proposed pipeline is applied on predicting [Formula: see text] uptake in MOFs. The resulting model outperforms a conventional model built with geometric descriptors and requires two orders of magnitude less training data to reach a given level of performance. Moreover, the transferability of the approach to different host-guest systems is demonstrated, examining [Formula: see text] uptake in COFs. The generic character of the proposed methodology, inherited from the PES, renders it applicable to fields other than reticular chemistry.
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Affiliation(s)
- Antonios P Sarikas
- Department of Chemistry, University of Crete, Voutes Campus, 70013, Heraklion, Crete, Greece
| | - Konstantinos Gkagkas
- Advanced Technology Division, Toyota Motor Europe NV/SA, Technical Center, Hoge Wei 33B, 1930, Zaventem, Belgium
| | - George E Froudakis
- Department of Chemistry, University of Crete, Voutes Campus, 70013, Heraklion, Crete, Greece.
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3
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Parsaei M, Akhbari K, Tylianakis E, Froudakis GE. Effects of Fluorinated Functionalization of Linker on Quercetin Encapsulation, Release and Hela Cell Cytotoxicity of Cu-Based MOFs as Smart pH-Stimuli Nanocarriers. Chemistry 2024; 30:e202301630. [PMID: 37581254 DOI: 10.1002/chem.202301630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 08/13/2023] [Accepted: 08/14/2023] [Indexed: 08/16/2023]
Abstract
Controlled delivery of target molecules is required in many medical and chemical applications. For such purposes, metal-organic frameworks (MOFs), which possess desirable features such as high porosity, large surface area, and adjustable functionalities, hold great potential as drug carriers. Herein, Quercetin (QU), as an anticancer drug, was loaded on Cu2 (BDC)2 (DABCO) and Cu2 (F4 BDC)2 )DABCO) MOFs (BDC=1,4-benzenedicarboxylate and DABCO=1,4-diazabicyclo[2.2.2]octane). As these Cu-MOFs have a high surface area, an appropriate pore size, and biocompatible ingredients, they can be utilized to deliver QU. The loading efficiency of QU in these MOFs was 49.5 % and 41.3 %, respectively. The drug-loaded compounds displayed sustained drug release over 15 days, remarkably high drug loading capacities and pH-controlled release behavior. The prepared nanostructures were characterized by different characterization technics including FT-IR, PXRD, ZP, TEM, FE-SEM, UV-vis, and BET. In addition, MTT assays were carried out on the HEK-293 and HeLa cell lines to investigate cytotoxicity. Cellular apoptosis analysis was performed to investigate the cell death mechanisms. Grand Canonical Monte Carlo simulations were conducted to analyze the interactions between MOFs and QU. Moreover, the stability of MOFs was also investigated during and after the drug release process. Ultimately, kinetic models of drug release were evaluated.
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Affiliation(s)
- Mozhgan Parsaei
- School of Chemistry, College of Science, University of Tehran, 14155-6455, Tehran, Iran
| | - Kamran Akhbari
- School of Chemistry, College of Science, University of Tehran, 14155-6455, Tehran, Iran
| | - Emmanuel Tylianakis
- Department of Materials Science and Technology, Voutes Campus, University of Crete, GR-71003 Heraklion, Crete, Greece
| | - George E Froudakis
- Department of Chemistry, Voutes Campus, University of Crete, GR-71003 Heraklion, Crete, Greece
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4
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Monti D, Patil N, Black AP, Raptis D, Mavrandonakis A, Froudakis GE, Yousef I, Goujon N, Mecerreyes D, Marcilla R, Ponrouch A. Polyimides as Promising Cathodes for Metal-Organic Batteries: A Comparison between Divalent (Ca 2+, Mg 2+) and Monovalent (Li +, Na +) Cations. ACS Appl Energy Mater 2023; 6:7250-7257. [PMID: 37448980 PMCID: PMC10336839 DOI: 10.1021/acsaem.3c00969] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Accepted: 06/12/2023] [Indexed: 07/18/2023]
Abstract
Ca- and Mg-based batteries represent a more sustainable alternative to Li-ion batteries. However, multivalent cation technologies suffer from poor cation mass transport. In addition, the development of positive electrodes enabling reversible charge storage currently represents one of the major challenges. Organic positive electrodes, in addition to being the most sustainable and potentially low-cost candidates, compared with their inorganic counterparts, currently present the best electrochemical performances in Ca and Mg cells. Unfortunately, organic positive electrodes suffer from relatively low capacity retention upon cycling, the origin of which is not yet fully understood. Here, 1,4,5,8-naphthalenetetracarboxylic dianhydride-derived polyimide was tested in Li, Na, Mg, and Ca cells for the sake of comparison in terms of redox potential, gravimetric capacities, capacity retention, and rate capability. The redox mechanisms were also investigated by means of operando IR experiments, and a parameter affecting most figures of merit has been identified: the presence of contact ion-pairs in the electrolyte.
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Affiliation(s)
- Damien Monti
- Institut
de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Catalonia, Spain
| | - Nagaraj Patil
- Electrochemical
Processes Unit, IMDEA Energy, Avda. Ramón de La Sagra 3, 28935 Móstoles, Spain
| | - Ashley P. Black
- Institut
de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Catalonia, Spain
| | - Dionysios Raptis
- Department
of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece
| | - Andreas Mavrandonakis
- Electrochemical
Processes Unit, IMDEA Energy, Avda. Ramón de La Sagra 3, 28935 Móstoles, Spain
| | - George E. Froudakis
- Department
of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece
| | - Ibraheem Yousef
- MIRAS
Beamline, ALBA Synchrotron Light Source, Carrer de la Llum 2-26, 08290 Cerdanyola del Vallès, Spain
| | - Nicolas Goujon
- POLYMAT
University of the Basque Country UPV/EHUAvenida Tolosa 72, 20018 Donostia-San
Sebastián, Spain
- Centre
for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Alava Technology Park, Albert Einstein
48, 01510 Vitoria-Gasteiz, Spain
| | - David Mecerreyes
- POLYMAT
University of the Basque Country UPV/EHUAvenida Tolosa 72, 20018 Donostia-San
Sebastián, Spain
| | - Rebeca Marcilla
- Electrochemical
Processes Unit, IMDEA Energy, Avda. Ramón de La Sagra 3, 28935 Móstoles, Spain
| | - Alexandre Ponrouch
- Institut
de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Catalonia, Spain
- ALISTORE−European
Research Institute, CNRS FR 3104, Hub de l’Energie, 15 Rue Baudelocque, 80039 Amiens, France
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Livas CG, Raptis D, Tylianakis E, Froudakis GE. Multiscale Theoretical Study of Sulfur Dioxide (SO2) Adsorption in Metal–Organic Frameworks. Molecules 2023; 28:molecules28073122. [PMID: 37049885 PMCID: PMC10096088 DOI: 10.3390/molecules28073122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 03/19/2023] [Accepted: 03/22/2023] [Indexed: 04/03/2023] Open
Abstract
In the present work, we used DFT in order to study the interaction of SO2 with 41 strategically functionalized benzenes that can be incorporated in MOF linkers. The interaction energy of phenyl phosphonic acid (–PO3H2) with SO2 was determined to be the strongest (−10.1 kcal/mol), which is about 2.5 times greater than the binding energy with unfunctionalized benzene (−4.1 kcal/mol). To better understand the nature of SO2 interactions with functionalized benzenes, electron redistribution density maps of the relevant complexes with SO2 were created. In addition, three of the top performing functional groups were selected (–PO3H2, –CNH2NOH, –OSO3H) to modify the IRMOF-8 organic linker and calculate its SO2 adsorption capacity with Grand Canonical Monte Carlo (GCMC) simulations. Our results showed a great increase in the absolute volumetric uptake at low pressures, indicating that the suggested functionalization technique can be used to enhance the SO2 uptake capability not only in MOFs but in a variety of porous materials.
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Tsangarakis C, Azmy A, Tampaxis C, Zibouche N, Klontzas E, Tylianakis E, Froudakis GE, Steriotis T, Spanopoulos I, Trikalitis PN. Water-Stable etb-MOFs for Methane and Carbon Dioxide Storage. Inorg Chem 2023; 62:5496-5504. [PMID: 36976265 DOI: 10.1021/acs.inorgchem.2c04483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
Abstract
We utilized the etb platform of MOFs for the synthesis of two new water-stable compounds based on amide functionalized trigonal tritopic organic linkers H3BTBTB (L1), H3BTCTB (L2) and Al3+ metal ions, namely, Al(L1) and Al(L2). The mesoporous Al(L1) material exhibits an impressive methane (CH4) uptake at high pressures and ambient temperature. The corresponding values of 192 cm3 (STP) cm-3, 0.254 g g-1 at 100 bar, and 298 K are among the highest reported for mesoporous MOFs, while the gravimetric and volumetric working capacities (between 80 bar and 5 bar) can be well compared to the best MOFs for CH4 storage. Furthermore, at 298 K and 50 bar, Al(L1) adsorbs 50 wt % (304 cm3 (STP) cm-3) CO2, values among the best recorded for CO2 storage using porous materials. To gain insight into the mechanism accounting for the resultant enhanced CH4 storage capacity, theoretical calculations were performed, revealing the presence of strong CH4 adsorption sites near the amide groups. Our work demonstrates that amide functionalized mesoporous etb-MOFs can be valuable for the design of versatile coordination compounds with CH4 and CO2 storage capacities comparable to ultra-high surface area microporous MOFs.
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Affiliation(s)
| | - Ali Azmy
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Christos Tampaxis
- National Center for Scientific Research "Demokritos", Patriarchou Grigoriou and Neapoleos 27, 15341 Athens, Greece
| | | | - Emmanuel Klontzas
- Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 116 35 Athens, Greece
| | - Emmanuel Tylianakis
- Department of Materials Science and Technology, University of Crete, Heraklion 71003, Greece
| | | | - Theodore Steriotis
- National Center for Scientific Research "Demokritos", Patriarchou Grigoriou and Neapoleos 27, 15341 Athens, Greece
| | - Ioannis Spanopoulos
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
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7
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Iskandarov J, Fanourgakis GS, Ahmed S, Alameri W, Froudakis GE, Karanikolos GN. Data-driven prediction of in situ CO 2 foam strength for enhanced oil recovery and carbon sequestration. RSC Adv 2022; 12:35703-35711. [PMID: 36545114 PMCID: PMC9749141 DOI: 10.1039/d2ra05841c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 11/25/2022] [Indexed: 12/23/2022] Open
Abstract
Carbon dioxide foam injection is a promising enhanced oil recovery (EOR) method, being at the same time an efficient carbon storage technology. The strength of CO2 foam under reservoir conditions plays a crucial role in predicting the EOR and sequestration performance, yet, controlling the strength of the foam is challenging due to the complex physics of foams and their sensitivity to operational conditions and reservoir parameters. Data-driven approaches for complex fluids such as foams can be an alternative method to the time-consuming experimental and conventional modeling techniques, which often fail to accurately describe the effect of all important related parameters. In this study, machine learning (ML) models were constructed to predict the oil-free CO2 foam apparent viscosity in the bulk phase and sandstone formations. Based on previous experimental data on various operational and reservoir conditions, predictive models were developed by employing six ML algorithms. Among the applied algorithms, neural network algorithms provided the most precise predictions for bulk and porous media. The established models were then used to compute the critical foam quality under different conditions and determine the maximum apparent foam viscosity, effectively controlling CO2 mobility to co-optimize EOR and CO2 sequestration.
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Affiliation(s)
- Javad Iskandarov
- Department of Chemical Engineering, Khalifa UniversityP. O. Box 127788Abu DhabiUAE,Research and Innovation Center on CO2 and H2 (RICH), Khalifa UniversityP. O. Box 127788Abu DhabiUAE
| | - George S. Fanourgakis
- Department of Chemistry, University of CreteVoutes CampusHeraklionGR-70013CreteGreece,Laboratory of Quantum and Computational Chemistry, Department of Chemistry, Aristotle University of Thessaloniki54124 ThessalonikiGreece
| | - Shehzad Ahmed
- Department of Petroleum Engineering, Khalifa UniversityP. O. Box 127788Abu DhabiUAE
| | - Waleed Alameri
- Department of Petroleum Engineering, Khalifa UniversityP. O. Box 127788Abu DhabiUAE
| | - George E. Froudakis
- Department of Chemistry, University of CreteVoutes CampusHeraklionGR-70013CreteGreece
| | - Georgios N. Karanikolos
- Department of Chemical Engineering, Khalifa UniversityP. O. Box 127788Abu DhabiUAE,Research and Innovation Center on CO2 and H2 (RICH), Khalifa UniversityP. O. Box 127788Abu DhabiUAE,Center for Catalysis and Separations (CeCaS), Khalifa UniversityP. O. Box 127788Abu DhabiUAE,Department of Chemical Engineering, University of Patras26504 PatrasGreece
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8
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Raptis D, Livas C, Stavroglou G, Giappa RM, Tylianakis E, Stergiannakos T, Froudakis GE. Surface Modification Strategy for Enhanced NO 2 Capture in Metal-Organic Frameworks. Molecules 2022; 27:molecules27113448. [PMID: 35684386 PMCID: PMC9182044 DOI: 10.3390/molecules27113448] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 05/23/2022] [Accepted: 05/24/2022] [Indexed: 11/26/2022] Open
Abstract
The interaction strength of nitrogen dioxide (NO2) with a set of 43 functionalized benzene molecules was investigated by performing density functional theory (DFT) calculations. The functional groups under study were strategically selected as potential modifications of the organic linker of existing metal–organic frameworks (MOFs) in order to enhance their uptake of NO2 molecules. Among the functional groups considered, the highest interaction energy with NO2 (5.4 kcal/mol) was found for phenyl hydrogen sulfate (-OSO3H) at the RI-DSD-BLYP/def2-TZVPP level of theory—an interaction almost three times larger than the corresponding binding energy for non-functionalized benzene (2.0 kcal/mol). The groups with the strongest NO2 interactions (-OSO3H, -PO3H2, -OPO3H2) were selected for functionalizing the linker of IRMOF-8 and investigating the trend in their NO2 uptake capacities with grand canonical Monte Carlo (GCMC) simulations at ambient temperature for a wide pressure range. The predicted isotherms show a profound enhancement of the NO2 uptake with the introduction of the strongly-binding functional groups in the framework, rendering them promising modification candidates for improving the NO2 uptake performance not only in MOFs but also in various other porous materials.
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Affiliation(s)
- Dionysios Raptis
- Department of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece; (D.R.); (C.L.); (G.S.); (R.M.G.); (T.S.)
| | - Charalampos Livas
- Department of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece; (D.R.); (C.L.); (G.S.); (R.M.G.); (T.S.)
| | - George Stavroglou
- Department of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece; (D.R.); (C.L.); (G.S.); (R.M.G.); (T.S.)
| | - Rafaela Maria Giappa
- Department of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece; (D.R.); (C.L.); (G.S.); (R.M.G.); (T.S.)
- Department of Materials Science and Technology, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece;
| | - Emmanuel Tylianakis
- Department of Materials Science and Technology, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece;
| | - Taxiarchis Stergiannakos
- Department of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece; (D.R.); (C.L.); (G.S.); (R.M.G.); (T.S.)
| | - George E. Froudakis
- Department of Chemistry, University of Crete, Voutes Campus, GR-71003 Heraklion, Crete, Greece; (D.R.); (C.L.); (G.S.); (R.M.G.); (T.S.)
- Correspondence:
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9
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Fanourgakis GS, Gkagkas K, Tylianakis E, Froudakis GE. A Universal Machine Learning Algorithm for Large-Scale Screening of Materials. J Am Chem Soc 2020; 142:3814-3822. [PMID: 32017547 DOI: 10.1021/jacs.9b11084] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Application of machine learning (ML) methods for the determination of the gas adsorption capacities of nanomaterials, such as metal-organic frameworks (MOF), has been extensively investigated over the past few years as a computationally efficient alternative to time-consuming and computationally demanding molecular simulations. Depending on the thermodynamic conditions and the adsorbed gas, ML has been found to provide very accurate results. In this work, we go one step further and we introduce chemical intuition in our descriptors by using the "type" of the atoms in the structure, instead of the previously used building blocks, to account for the chemical character of the MOF. ML predictions for the methane and carbon dioxide adsorption capacities of several tens of thousands of hypothetical MOFs are evaluated at various thermodynamic conditions using the random forest algorithm. For all cases examined, the use of atom types instead of building blocks leads to significantly more accurate predictions, while the number of MOFs needed for the training of the ML algorithm in order to achieve a specified accuracy can be reduced by an order of magnitude. More importantly, since practically there are an unlimited number of building blocks that materials can be made of but a limited number of atom types, the proposed approach is more general and can be considered as universal. The universality and transferability was proved by predicting the adsorption properties of a completely different family of materials after the training of the ML algorithm in MOFs.
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Affiliation(s)
- George S Fanourgakis
- Department of Chemistry , University of Crete , Voutes Campus , GR-70013 Heraklion , Crete , Greece
| | - Konstantinos Gkagkas
- Advanced Technology Division, Toyota Motor Europe NV/SA , Technical Center , Hoge Wei 33B , 1930 Zaventem , Belgium
| | - Emmanuel Tylianakis
- Department of Materials Science and Technology , University of Crete , Voutes Campus , GR-70013 , Heraklion , Crete , Greece
| | - George E Froudakis
- Department of Chemistry , University of Crete , Voutes Campus , GR-70013 Heraklion , Crete , Greece
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10
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Abstract
Metal–organic frameworks (MOFs) have been recently used as potential nanocarrier platforms in biomedical applications such as drug storage and delivery, due to their low toxicity, biodegradability, high internal surface area, widely tunable composition, high payloads and controlled drug release.
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11
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Angeli GK, Sartsidou C, Vlachaki S, Spanopoulos I, Tsangarakis C, Kourtellaris A, Klontzas E, Froudakis GE, Tasiopoulos A, Trikalitis PN. Reticular Chemistry and the Discovery of a New Family of Rare Earth (4, 8)-Connected Metal-Organic Frameworks with csq Topology Based on RE 4(μ 3-O) 2(COO) 8 Clusters. ACS Appl Mater Interfaces 2017; 9:44560-44566. [PMID: 29215862 DOI: 10.1021/acsami.7b16380] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
In recent years, the design and discovery of new metal-organic framework (MOF) platforms with distinct structural features and tunable chemical composition has remarkably enhanced by applying reticular chemistry rules and the molecular building block (MBB) approach. We targeted the synthesis of new rare earth (RE)-MOF platforms based on a rectangular-shaped 4-c linker, acting as a rigid organic MBB. Accordingly, we designed and synthesized the organic ligand 1,2,4,5-tetrakis(4-carboxyphenyl)-3,6-dimethyl-benzene (H4L), in which the two methyl groups attached to the central phenyl ring lock the four peripheral carboxyphenyl groups to an orthogonal/vertical position. We report here a new family of RE-MOFs featuring the novel inorganic building unit, RE4(μ3-O)2 (RE: Y3+, Tb3+, Dy3+, Ho3+, Er3+, and Yb3+), with planar D2h symmetry. The rigid 4-c linker, H4L, directs the in situ assembly of the unique 8-c RE4(μ3-O)2(COO)8 cluster, resulting in the formation of the first (4, 8)-c RE-MOFs with csq topology, RE-csq-MOF-1. The structures of the yttrium (Y-csq-MOF-1) and holmium (Ho-csq-MOF-1) analogues were determined by single-crystal X-ray diffraction analysis. Y-csq-MOF-1 was successfully activated and tested for Xe/Kr separation. The results show that Y-csq-MOF-1 has high isosteric heat of adsorption for Xe (33.8 kJ mol-1), with high Xe/Kr selectivity (IAST 12.1, Henry 12.9) and good Xe uptake (1.94 mmol g-1 at 298 K and 1 bar), placing this MOF among the top-performing adsorbents for Xe/Kr separation.
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Affiliation(s)
- Giasemi K Angeli
- Department of Chemistry, University of Crete , Voutes, 71003 Heraklion, Greece
| | - Christina Sartsidou
- Department of Chemistry, University of Crete , Voutes, 71003 Heraklion, Greece
| | - Styliani Vlachaki
- Department of Chemistry, University of Crete , Voutes, 71003 Heraklion, Greece
| | - Ioannis Spanopoulos
- Department of Chemistry, University of Crete , Voutes, 71003 Heraklion, Greece
| | | | | | - Emmanuel Klontzas
- Department of Chemistry, University of Crete , Voutes, 71003 Heraklion, Greece
| | - George E Froudakis
- Department of Chemistry, University of Crete , Voutes, 71003 Heraklion, Greece
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12
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13
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Spanopoulos I, Tsangarakis C, Barnett S, Nowell H, Klontzas E, Froudakis GE, Trikalitis PN. Directed assembly of a high surface area 2D metal–organic framework displaying the augmented “kagomé dual” (kgd-a) layered topology with high H2and CO2uptake. Inorg Chem Front 2017. [DOI: 10.1039/c6qi00547k] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A high surface area layered MOF withkgd-atopology, based on a nanosized and highly aromatic hexagonal linker, shows high H2and CO2uptake.
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Affiliation(s)
| | | | - Sarah Barnett
- Diamond Light Source
- Harwell Science and Innovation Campus
- Oxfordshire OX11 0DE
- UK
| | - Harriot Nowell
- Diamond Light Source
- Harwell Science and Innovation Campus
- Oxfordshire OX11 0DE
- UK
| | - Emmanuel Klontzas
- Department of Chemistry
- University of Crete
- Voutes 71003 Heraklion
- Greece
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14
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Kotzabasaki M, Galdadas I, Tylianakis E, Klontzas E, Cournia Z, Froudakis GE. Multiscale simulations reveal IRMOF-74-III as a potent drug carrier for gemcitabine delivery. J Mater Chem B 2017; 5:3277-3282. [DOI: 10.1039/c7tb00220c] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Kotzabasaki et al. use a multiscale computational approach to investigate the microscopic behaviour of gemcitabine stored in (OH)-IRMOF-74-III. The principles can be exploited for nano-carrier screening purposes prior to experimental investigation.
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Affiliation(s)
| | - Ioannis Galdadas
- Biomedical Research Foundation Academy of Athens
- 115 27 Athens
- Greece
| | - Emmanuel Tylianakis
- Materials Science and Technology Department
- University of Crete
- Heraklion
- Greece
| | | | - Zoe Cournia
- Biomedical Research Foundation Academy of Athens
- 115 27 Athens
- Greece
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15
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Skarmoutsos I, Tamiolakis G, Froudakis GE. Highly selective separation and adsorption-induced phase transition of SF 6 -N 2 fluid mixtures in three-dimensional carbon nanotube networks. J Supercrit Fluids 2016. [DOI: 10.1016/j.supflu.2016.03.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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16
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Koukaras EN, Papadimitriou SA, Bikiaris DN, Froudakis GE. Properties and energetics for design and characterization of chitosan nanoparticles used for drug encapsulation. RSC Adv 2014. [DOI: 10.1039/c3ra47572g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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17
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Tsikalas GK, Lazarou P, Klontzas E, Pergantis SA, Spanopoulos I, Trikalitis PN, Froudakis GE, Katerinopoulos HE. A “turn-on”–turning-to-ratiometric sensor for zinc(ii) ions in aqueous media. RSC Adv 2014. [DOI: 10.1039/c3ra45796f] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
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18
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Skarmoutsos I, Tamiolakis G, Froudakis GE. Separation of CO2–N2mixtures in 3D carbon-based porous nanotube networks: a molecular dynamics investigation. Phys Chem Chem Phys 2014; 16:876-9. [DOI: 10.1039/c3cp54587c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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19
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Xydias P, Spanopoulos I, Klontzas E, Froudakis GE, Trikalitis PN. Drastic Enhancement of the CO2 Adsorption Properties in Sulfone-Functionalized Zr- and Hf-UiO-67 MOFs with Hierarchical Mesopores. Inorg Chem 2013; 53:679-81. [DOI: 10.1021/ic402430n] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Pantelis Xydias
- Department of Chemistry, University of Crete, Voutes 71003, Heraklion, Greece
| | - Ioannis Spanopoulos
- Department of Chemistry, University of Crete, Voutes 71003, Heraklion, Greece
| | - Emmanuel Klontzas
- Department of Chemistry, University of Crete, Voutes 71003, Heraklion, Greece
| | - George E. Froudakis
- Department of Chemistry, University of Crete, Voutes 71003, Heraklion, Greece
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20
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Koukaras EN, Papadimitriou SA, Bikiaris DN, Froudakis GE. Insight on the formation of chitosan nanoparticles through ionotropic gelation with tripolyphosphate. Mol Pharm 2012; 9:2856-62. [PMID: 22845012 DOI: 10.1021/mp300162j] [Citation(s) in RCA: 137] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
This work reports details pertaining to the formation of chitosan nanoparticles that we prepare by the ionic gelation method. The molecular interactions of the ionic cross-linking of chitosan with tripolyphosphate have been investigated and elucidated by means of all-electron density functional theory. Solvent effects have been taken into account using implicit models. We have identified primary-interaction ionic cross-linking configurations that we define as H-link, T-link, and M-link, and we have quantified the corresponding interaction energies. H-links, which display high interaction energies and are also spatially broadly accessible, are the most probable cross-linking configurations. At close range, proton transfer has been identified, with maximum interaction energies ranging from 12.3 up to 68.3 kcal/mol depending on the protonation of the tripolyphosphate polyanion and the relative coordination of chitosan with tripolyphosphate. On the basis of our results for the linking types (interaction energies and torsion bias), we propose a simple mechanism for their impact on the chitosan/TPP nanoparticle formation process. We introduce the β ratio, which is derived from the commonly used α ratio but is more fundamental since it additionally takes into account structural details of the oligomers.
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Affiliation(s)
- Emmanuel N Koukaras
- Laboratory of Molecular Engineering, Department of Physics, University of Patras, Patras, Greece
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21
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Voutsadaki S, Tsikalas GK, Klontzas E, Froudakis GE, Pergantis SA, Demadis KD, Katerinopoulos HE. A cyclam-type “turn on” fluorescent sensor selective for mercury ions in aqueous media. RSC Adv 2012. [DOI: 10.1039/c2ra20971c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
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22
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Tylianakis E, Klontzas E, Froudakis GE. Multi-scale theoretical investigation of hydrogen storage in covalent organic frameworks. Nanoscale 2011; 3:856-869. [PMID: 21218227 DOI: 10.1039/c0nr00505c] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The quest for efficient hydrogen storage materials has been the limiting step towards the commercialization of hydrogen as an energy carrier and has attracted a lot of attention from the scientific community. Sophisticated multi-scale theoretical techniques have been considered as a valuable tool for the prediction of materials storage properties. Such techniques have also been used for the investigation of hydrogen storage in a novel category of porous materials known as Covalent Organic Frameworks (COFs). These framework materials are consisted of light elements and are characterized by exceptional physicochemical properties such as large surface areas and pore volumes. Combinations of ab initio, Molecular Dynamics (MD) and Grand Canonical Monte-Carlo (GCMC) calculations have been performed to investigate the hydrogen adsorption in these ultra-light materials. The purpose of the present review is to summarize the theoretical hydrogen storage studies that have been published after the discovery of COFs. Experimental and theoretical studies have proven that COFs have comparable or better hydrogen storage abilities than other competitive materials such as MOF. The key factors that can lead to the improvement of the hydrogen storage properties of COFs are highlighted, accompanied with some recently presented theoretical multi-scale studies concerning these factors.
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Affiliation(s)
- Emmanuel Tylianakis
- Materials Science and Technology Department, University of Crete, P.O. Box 2208, 71409, Heraklion, Crete, Greece
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23
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Psofogiannakis GM, Steriotis TA, Bourlinos AB, Kouvelos EP, Charalambopoulou GC, Stubos AK, Froudakis GE. Enhanced hydrogen storage by spillover on metal-doped carbon foam: an experimental and computational study. Nanoscale 2011; 3:933-936. [PMID: 21218229 DOI: 10.1039/c0nr00767f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A lightweight, oxygen-rich carbon foam was prepared and doped with Pd/Hg alloy nanoparticles. The composite revealed high H2 sorption capacity (5 wt%) at room temperature and moderate pressure (2 MPa). The results were explained on the basis of the H2 spillover mechanism using Density Functional Theory.
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Affiliation(s)
- George M Psofogiannakis
- Department of Chemistry, University of Crete, PO Box 2208, Voutes, Heraklion Crete, 710 03, Greece
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24
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Tylianakis E, Dimitrakakis GK, Melchor S, Dobado JA, Froudakis GE. Porous nanotube network: a novel 3-D nanostructured material with enhanced hydrogen storage capacity. Chem Commun (Camb) 2011; 47:2303-5. [DOI: 10.1039/c0cc03002c] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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25
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Psofogiannakis GM, Froudakis GE. Fundamental studies and perceptions on the spillover mechanism for hydrogen storage. Chem Commun (Camb) 2011; 47:7933-43. [DOI: 10.1039/c1cc11389e] [Citation(s) in RCA: 86] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Abstract
Hydrogen storage properties have been studied on newly designed three-dimensional covalent-organic framework (3D-COF). The design of these materials was based on the ctn network of the ultralow density COF-102. The structures were optimized by multiscale techniques and the optimized structures were checked for their storage capacities by grand canonical Monte Carlo simulations. Our simulations demonstrate that the gravimetric uptake of one of these new COFs can overpass the value of 25 wt % in 77 K and reach the Department of Energy's target of 6 wt % in room temperature, classifying them between the top hydrogen storage materials.
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Affiliation(s)
- Emmanouel Klontzas
- Department of Chemistry, University of Crete, P.O. Box 2208, 71003 Heraklion, Crete, Greece
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27
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Voutsadaki S, Tsikalas GK, Klontzas E, Froudakis GE, Katerinopoulos HE. A “turn-on” coumarin-based fluorescent sensor with high selectivity for mercury ions in aqueous media. Chem Commun (Camb) 2010; 46:3292-4. [DOI: 10.1039/b926384e] [Citation(s) in RCA: 119] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Affiliation(s)
- George M. Psofogiannakis
- Department of Chemistry, University of Crete, P.O. Box 2208, Voutes, Heraklion Crete, 710 03, Greece
| | - George E. Froudakis
- Department of Chemistry, University of Crete, P.O. Box 2208, Voutes, Heraklion Crete, 710 03, Greece
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29
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Mavrandonakis A, Klontzas E, Tylianakis E, Froudakis GE. Enhancement of Hydrogen Adsorption in Metal−Organic Frameworks by the Incorporation of the Sulfonate Group and Li Cations. A Multiscale Computational Study. J Am Chem Soc 2009; 131:13410-4. [DOI: 10.1021/ja9043888] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andreas Mavrandonakis
- Department of Chemistry and Department of Materials Science and Technology, University of Crete, P.O. Box 2208, 71003 Heraklion, Crete, Greece
| | - Emmanouel Klontzas
- Department of Chemistry and Department of Materials Science and Technology, University of Crete, P.O. Box 2208, 71003 Heraklion, Crete, Greece
| | - Emmanuel Tylianakis
- Department of Chemistry and Department of Materials Science and Technology, University of Crete, P.O. Box 2208, 71003 Heraklion, Crete, Greece
| | - George E. Froudakis
- Department of Chemistry and Department of Materials Science and Technology, University of Crete, P.O. Box 2208, 71003 Heraklion, Crete, Greece
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30
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Tylianakis E, Klontzas E, Froudakis GE. The effect of structural and energetic parameters of MOFs and COFs towards the improvement of their hydrogen storage properties. Nanotechnology 2009; 20:204030. [PMID: 19420678 DOI: 10.1088/0957-4484/20/20/204030] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Open-framework materials have been proposed as potential materials for hydrogen storage. Metal-organic framework (MOF) and covalent-organic framework (COF) materials are under extensive study to discover their storage abilities. In particular the IRMOF family of materials have been considered as ideal to study the effect of different factors that affect the hydrogen storage capacity. In this paper, we analyse the effect of different factors such as surface area, pore volume and the interaction of hydrogen with the molecular framework on the hydrogen uptake of such materials. Through this analysis we propose guidelines to enhance hydrogen storage capacity of already synthesized materials and recommend advanced materials for this application.
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Affiliation(s)
- Emmanuel Tylianakis
- Materials Science and Technology Department, University of Crete, PO Box 2208,GR-71409 Heraklion, Crete, Greece
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31
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Vogiatzis KD, Mavrandonakis A, Klopper W, Froudakis GE. Ab initio Study of the Interactions between CO2and N-Containing Organic Heterocycles. Chemphyschem 2009; 10:374-83. [DOI: 10.1002/cphc.200800583] [Citation(s) in RCA: 164] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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32
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Dimitrakakis GK, Tylianakis E, Froudakis GE. Pillared graphene: a new 3-D network nanostructure for enhanced hydrogen storage. Nano Lett 2008; 8:3166-70. [PMID: 18800853 DOI: 10.1021/nl801417w] [Citation(s) in RCA: 255] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
A multiscale theoretical approach was used to investigate hydrogen storage in a novel three-dimensional carbon nanostructure. This novel nanoporous material has by design tunable pore sizes and surface areas. Its interaction with hydrogen was studied thoroughly via ab initio and grand canonical Monte Carlo calculations. Our results show that, if this material is doped with lithium cations, it can store up to 41 g H2/L under ambient conditions, almost reaching the DOE volumetric requirement for mobile applications.
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33
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Klontzas E, Mavrandonakis A, Tylianakis E, Froudakis GE. Improving hydrogen storage capacity of MOF by functionalization of the organic linker with lithium atoms. Nano Lett 2008; 8:1572-1576. [PMID: 18494530 DOI: 10.1021/nl072941g] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
A combination of quantum and classical calculations have been performed in order to investigate hydrogen storage in metal-organic frameworks (MOFs) modified by lithium alkoxide groups. Ab initio calculations showed that the interaction energies between the hydrogen molecules and this functional group are up to three times larger compared with unmodified MOF. This trend was verified by grand canonical Monte Carlo (GCMC) simulations in various thermodynamic conditions. The gravimetric capacity of the Li-modified MOFs reached the value of 10 wt % at 77 K and 100 bar, while our results are very promising at room temperature, too, with 4.5 wt %.
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Abstract
A variety of high and low level ab-initio calculations have been performed to calculate hydrogen's physisorption binding energy on carbon nanotube's walls. This study focuses on the performance of several functionals on treating the H2-carbon nanotube interaction within the Density Functional Theory. Our results show that the behavior of the exchange functional in the low density region plays an important role in describing this weak van der Waals type of interaction. By comparing the binding energy values obtained on each theoretical level and interpreting the results in terms of %wt percentages of hydrogen storage using the Langmuir isotherms, we proposed possible ways to treat computationally the hydrogen storage problem within the DFT.
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Abstract
A multiscale theoretical approach was used for the investigation of hydrogen storage in the recently synthesized carbon nanoscrolls. First, ab initio calculations at the density functional level of theory (DFT) were performed in order to (a) calculate the binding energy of H2 molecules at the walls of nanoscrolls and (b) fit the parameters of the interatomic potential used in Monte Carlo simulations. Second, classical Monte Carlo simulations were performed for estimating the H2 storage capacity of "experimental size" nanoscrolls containing thousands of atoms. Our results show that pure carbon nanoscrolls cannot accumulate hydrogen because the interlayer distance is too small. However, an opening of the spiral structure to approximately 7 A followed by alkali doping can make them very promising materials for hydrogen storage application, reaching 3 wt % at ambient temperature and pressure.
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36
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Mpourmpakis G, Froudakis GE, Lithoxoos GP, Samios J. Effect of curvature and chirality for hydrogen storage in single-walled carbon nanotubes: A Combined ab initio and Monte Carlo investigation. J Chem Phys 2007; 126:144704. [PMID: 17444729 DOI: 10.1063/1.2717170] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Combined ab initio and grand canonical Monte Carlo simulations have been performed to investigate the dependence of hydrogen storage in single-walled carbon nanotubes (SWCNTs) on both tube curvature and chirality. The ab initio calculations at the density functional level of theory can provide useful information about the nature of hydrogen adsorption in SWCNT selected sites and the binding under different curvatures and chiralities of the tube walls. Further to this, the grand canonical Monte Carlo atomistic simulation technique can model large-scale nanotube systems with different curvature and chiralities and reproduce their storage capacity by calculating the weight percentage of the adsorbed material (gravimetric density) under thermodynamic conditions of interest. The author's results have shown that with both computational techniques, the nanotube's curvature plays an important role in the storage process while the chirality of the tube plays none.
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Affiliation(s)
- Giannis Mpourmpakis
- Department of Chemistry, University of Crete, P.O. Box 1470, Heraklion, 71409 Crete, Greece
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37
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Mpourmpakis G, Froudakis GE. Why boron nitride nanotubes are preferable to carbon nanotubes for hydrogen storage?An ab initio theoretical study. Catal Today 2007. [DOI: 10.1016/j.cattod.2006.09.023] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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38
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Mpourmpakis G, Tylianakis E, Papanikolaou D, Froudakis GE. A multi scale theoretical study of Li+ interaction with carbon nanotubes. J Nanosci Nanotechnol 2006; 6:3731-5. [PMID: 17256322 DOI: 10.1166/jnn.2006.611] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
We investigated the effect of the curvature in lithium storage at single-walled carbon nanotubes, with both ab-initio and Molecular Dynamics simulations. Our results show that the carbon rings of nanotubes develop strong cation-pi- interactions with Li ion. These interactions result in positioning the alkali metal cation on top of a phenyl group. By using different types of carbon nanotubes it was revealed that the interaction is not affected by the type or the curvature of the nanotubes. Molecular Dynamics simulations of lithium intercalated nanotube bundles pointed at the fact that the cations remain attached to the nanotubes even at room temperature, with a maximum Li to C ratio of 1:2.1.
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Affiliation(s)
- Giannis Mpourmpakis
- Department of Chemistry, University of Crete, P 0. Box 1470, Heraklion, Crete 71409, Greece
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39
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Abstract
A multiscale theoretical approach is used for the investigation of hydrogen storage in silicon-carbon nanotubes (SiCNTs). First, ab initio calculations at the density functional level of theory (DFT) showed an increase of 20% in the binding energy of H2 in SiCNTs compared with pure carbon nanotubes (CNTs). This is explained by the alternative charges that exist in the SiCNT walls. Second, classical Monte Carlo simulation of nanotube bundles showed an even larger increase of the storage capacity in SiCNTs, especially in low temperature and high-pressure conditions. Our results verify in both theoretical levels that SiCNTs seem to be more suitable materials for hydrogen storage than pure CNTs.
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Affiliation(s)
- Giannis Mpourmpakis
- Department of Chemistry, University of Crete, P.O. Box 1470, 71409 Heraklion, Crete, Greece
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40
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Abstract
The interaction of the glycine radical on the side walls of both armchair and zigzag single walled carbon nanotubes is investigated by density functional theory. It is found that the interaction potential of the N-centered glycine radical with the tubes has a minimum of 16.9 (armchair) and 20.2 (zigzag) kcal/mol with respect to the dissociation products. In contrast, the C-centered radical, which is 22.7 kcal/mol lower in energy than the N-centered radical, does not form stable complexes with both types of carbon nanotubes.
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Affiliation(s)
- Andreas Mavrandonakis
- Department of Chemistry, University of Crete, P.O. Box 1470, Iraklion 714 09, Crete, Greece
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41
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Andriotis AN, Mpourmpakis G, Froudakis GE, Menon M. Magnetic enhancement and magnetic reduction in binary clusters of transition metal atoms. J Chem Phys 2004; 120:11901-4. [PMID: 15268224 DOI: 10.1063/1.1752878] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Electronic and magnetic properties of small binary clusters containing one or two transition metal atoms are investigated using ab initio calculations with a view to explain the experimentally observed magnetic enhancement/reduction in these systems. As the present investigations do not rely on spin-orbit effects, our results reveal the enhancement or reduction in the magnetic moment to depend on two main factors; namely geometry and, most importantly, the d-band filling. The results can be used as a guide in the experimental synthesis of high density magnetic grains.
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Affiliation(s)
- Antonis N Andriotis
- Institute of Electronic Structure and Laser, Foundation for Research and Technology-Hellas, P.O. Box 1527, 71110 Heraklio, Crete, Greece.
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42
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Mpourmpakis G, Froudakis GE, Andriotis AN, Menon M. Understanding the structure of metal encapsulated Si cages and nanotubes: Role of symmetry and d-band filling. J Chem Phys 2003. [DOI: 10.1063/1.1607309] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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43
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Stratakis M, Rabalakos C, Mpourmpakis G, Froudakis GE. Ene hydroperoxidation of isobutenylarenes within dye-exchanged zeolite Na-Y: control of site selectivity by cation-arene interactions. J Org Chem 2003; 68:2839-43. [PMID: 12662060 DOI: 10.1021/jo020599g] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The site selectivity in the singlet oxygen ene reaction of several deuterium-labeled isobutenylarenes depends on the position and the electronic nature of the aryl substitutents. For example, 1-(4-trifluoromethylphenyl)-2-methylpropene gives 82% twin selectivity whereas the isomeric 1-(2-trifluoromethylphenyl)-2-methylpropene gives 68% twix selectivity. If photooxygenation of these CF(3)-substituted compounds is carried out in solution, the opposite selectivity trends are found. On the basis of DFT calculations, these results are rationalized in terms of oxygen-cation and cation-arene interactions.
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Affiliation(s)
- Manolis Stratakis
- Department of Chemistry, University of Crete, 71409 Iraklion, Greece.
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44
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Mavrandonakis A, Mühlhäuser M, Froudakis GE, Peyerimhoff SD. The electronic spectrum of linear pentadiynylidene in comparison with isomeric ethynylcyclopropenylidene. Phys Chem Chem Phys 2002. [DOI: 10.1039/b200608c] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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45
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Andredakis GE, Moschou EA, Matthaiou K, Froudakis GE, Chaniotakis NA. Theoretical and experimental studies of metallated phenanthroline derivatives as carriers for the optimization of the nitrate sensor. Anal Chim Acta 2001. [DOI: 10.1016/s0003-2670(01)00972-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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46
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Schnell M, Mühlhäuser M, Froudakis GE, Peyerimhoff SD. Ab initio CCSD(T) and MRD-CI study of excited states and the electronic spectrum of linear C5+. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)00392-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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47
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Stratakis M, Hatzimarinaki M, Froudakis GE, Orfanopoulos M. Stereochemistry in the Reaction of 4-Methyl-1,2,4-triazoline-3,5-dione (MTAD) with β,β-Dimethyl-p-methoxystyrene. Are Open Biradicals the Reaction Intermediates? J Org Chem 2001; 66:3682-7. [PMID: 11374985 DOI: 10.1021/jo0005518] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reaction of 4-methyl-1,2,4-triazoline-3,5-dione (MTAD) with beta,beta-dimethyl-p-methoxystyrene (1) in chloroform affords four adducts: the ene, two stereoisomeric [4 + 2]/ene diadducts, and a minor product that is probably the double Diels-Alder diadduct. In methanol, only one regioisomeric methoxy adduct is formed. The stereochemistry of the reaction was examined by specific labeling of the anti methyl group of 1 as CD(3). In chloroform, the ene adduct is formed with >97% synselectivity, while the [4 + 2]/ene diadducts are formed with 20% loss of stereochemistry at the methyl groups. In methanol, the methoxy adducts are formed with almost complete loss of stereochemistry. A mechanism involving open biradicals is inconsistent with the experimental results. It is likely that the reaction proceeds through the formation of an aziridinium imide and an open zwitterionic intermediate. The aziridinium imide leads to the formation of the ene adduct. The open zwitterion, which has sufficient lifetime to rotate around the C-C bond, leads to the formation of a [4 + 2] cycloadduct, which reacts with a second molecule of MTAD in an ene-type mode to afford two stereoisomeric [4 + 2]/ene diadducts. In methanol, solvent captures the zwitterionic intermediate and forms the methoxy adduct. The relative distribution of the products in chloroform depends on the reaction temperature. Lower temperatures favor the ene reaction (entropically favorable), whereas at higher temperatures the [4 + 2]/ene diadducts become the major products.
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Affiliation(s)
- M Stratakis
- Department of Chemistry, University of Crete, 71409 Iraklion, Greece.
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Thermos K, Froudakis GE, Tagmatarchis N, Katerinopoulos HE. Cis- and trans-N-benzyl-octahydrobenzo[g]quinolines. Adrenergic and dopaminergic activity studies. Bioorg Med Chem Lett 2001; 11:883-6. [PMID: 11294383 DOI: 10.1016/s0960-894x(01)00076-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In vitro assays on a series of cis- and trans-octahydrobenzo[g]quinolines indicated an unusual trend of affinities at the dopaminergic receptors and alpha adrenoceptors. The trans N-benzyl analogues exhibited affinity at the alpha2 as well as the D1-like receptors whereas their N-unsubstituted congeners showed a distinct preference for the alpha2 adrenoceptor. Enhanced activity for the alpha2 receptors was also exhibited by the cis N-benzylated isomers. These observations are interpreted by theoretical calculations.
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Affiliation(s)
- K Thermos
- Laboratory of Pharmacology, School of Medicine, University of Crete, Heraklion, Greece
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