Accurate detection of tumor-specific gene fusions reveals strongly immunogenic personal neo-antigens

Cancer-associated gene fusions are a potential source for highly immunogenic neoantigens, but the lack of computational tools for accurate, sensitive identification of personal gene fusions has limited their targeting in personalized cancer immunotherapy. Here we present EasyFuse, a machine learning computational pipeline for detecting cancer-specific gene fusions in transcriptome data obtained from human cancer samples. EasyFuse predicts personal gene fusions with high precision and sensitivity, outperforming previously described tools. By testing immunogenicity with autologous blood lymphocytes from patients with cancer, we detected pre-established CD4⁺ and CD8⁺ T cell responses for 10 of 21 (48%) and for 1 of 30 (3%) identified gene fusions, respectively. The high frequency of T cell responses detected in patients with cancer supports the relevance of individual gene fusions as neoantigens that might be targeted in personalized immunotherapies, especially for tumors with low mutation burden.

Job marketability survey for athletic trainers in selected midwestern States

This study was conducted to determine job availability for athletic trainers in school and/or clinic settings in western Kansas, western Nebraska, western Oklahoma, and eastern Colorado. A survey was sent to 109 physical therapy (PT) clinics and 194 public schools to determine the major factors associated with job marketability. Of the 194 questionnaires mailed to the public schools, 119 were returned for a 61% response rate. Of the 109 questionnaires mailed to PT clinics, 57 were returned for a 52% response rate. Very few school districts (13%) hired their own trainer due to financial restrictions; therefore, the National Athletic Trainers' Association (NATA) athletic trainer would increase his/her likelihood of being hired if he/she was also teacher-certified. Most of the clinics responding would hire an NATA-certified athletic trainer if that individual was also licensed as a physical therapist, whereby, the trainer without PT licensure could be used for outreach programs for the local high schools. Essential factors identified by both the public school and clinic personnel for increasing the marketability of athletic trainers were: 1) NATA certification, 2) acquisition of an additional certification such as a teaching endorsement or a PT degree, and 3) willingness to provide services jointly to the schools and/or clinic with either being the primary hiring agent.